ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart26h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK065264.1| Oryza sativa (japonica cultivar-group) cDNA clon... 240 4e-60
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 147 4e-32
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 147 4e-32
4gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome... 147 4e-32
5ref|XM_470572.1| Oryza sativa (japonica cultivar-group), predic... 109 9e-21
6gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nippon... 70 7e-09
7gb|AF359557.1|AF359557 Pseudomonas syringae pv. maculicola plasm... 46 0.11
8gb|AC079936.7| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
9gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare str... 42 1.7
10emb|AL445677.1| Human DNA sequence from clone RP11-59D5 on chrom... 42 1.7
11dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
12dbj|AB026636.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 1.7
13gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
14dbj|AB007404.1| Oryza sativa gene for alanine aminotransferase, ... 42 1.7
15gb|AC125072.2| Mus musculus BAC clone RP23-458I4 from 3, complet... 40 6.6
16gb|AC146341.10| Medicago truncatula clone mth2-10g1, complete se... 40 6.6
17gb|AC157578.7| Mus musculus chromosome 3, clone RP24-179O3, comp... 40 6.6
18emb|AJ271736.1|HSA271736 Homo sapiens Xq pseudoautosomal region;... 40 6.6
19gb|AC112249.4| Homo sapiens BAC clone RP11-688H10 from 4, comple... 40 6.6
20emb|BX813333.7| Mouse DNA sequence from clone RP23-255A6 on chro... 40 6.6
21dbj|AP002518.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 6.6
22gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome 40 6.6
23gb|AC144761.4| Mus musculus BAC clone RP24-303C2 from 1, complet... 40 6.6
24gb|AC137584.4| Mus musculus BAC clone RP23-351O20 from 9, comple... 40 6.6
25emb|AL606509.6| Mouse DNA sequence from clone RP23-415B9 on chro... 40 6.6

>dbj|AK065264.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002K08, full
            insert sequence
          Length = 1688

 Score =  240 bits (121), Expect = 4e-60
 Identities = 258/300 (86%), Gaps = 4/300 (1%)
 Strand = Plus / Minus

                                                                        
Query: 191  ctaaaatttgatcagtttctcgttctttagccataaaagcatctcagctaggccttcagt 250
            |||||| ||||||| ||| || | ||| |||||||| |||||||| | ||| ||||||||
Sbjct: 1501 ctaaaacttgatcaatttttcatccttgagccataagagcatctctgatagaccttcagt 1442

                                                                        
Query: 251  caagtttcttggattgtagcccagttccctcttcgctttatcacatgaatacgcccattg 310
             |||||||||||| |||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 1441 taagtttcttggactgtagcccagctccctcttggctttatcacatgaatatgcccattg 1382

                                                                        
Query: 311  atgcctaataacacgcaccgtggggtagctgataagagggagctttccagtgatgcgaga 370
            ||| |||| |||||| || || ||||| |||||||| | ||| |||||||||||| ||||
Sbjct: 1381 atgtctaagaacacgtactgtagggtaactgataagtgtgagatttccagtgatgtgaga 1322

                                                                        
Query: 371  aatgaaaactgaaatccacccatatatttcaatcaaccagagtggtacatggaagtatgg 430
            ||| |||||||||||||||||  ||||||||||||||||||| ||||||||||| || ||
Sbjct: 1321 aataaaaactgaaatccaccc--atatttcaatcaaccagagaggtacatggaa-taggg 1265

                                                                        
Query: 431  g-gcctttgtgtttgtgatattggcagccatattgaaaatgtgcatgaatgacaagtttt 489
            | ||||| || ||||| || || |||||||||| |||||| ||  ||||||| |||||||
Sbjct: 1264 gtgccttcgtatttgtaatgttagcagccatatcgaaaatctgtttgaatgataagtttt 1205



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  147 bits (74), Expect = 4e-32
 Identities = 139/158 (87%), Gaps = 2/158 (1%)
 Strand = Plus / Minus

                                                                           
Query: 333     gggtagctgataagagggagctttccagtgatgcgagaaatgaaaactgaaatccaccca 392
               ||||| |||||||| ||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct: 4427723 gggtaactgataagtgggagatttccagtgatgtgagaaataaaaactgaaatccaccca 4427664

                                                                           
Query: 393     tatatttcaatcaaccagagtggtacatggaagtatggg-gcctttgtgtttgtgatatt 451
               |||||||||||||||||||| ||||||||||| || ||| ||||| || ||||| || ||
Sbjct: 4427663 tatatttcaatcaaccagagaggtacatggaa-taggggtgccttcgtatttgtaatgtt 4427605

                                                     
Query: 452     ggcagccatattgaaaatgtgcatgaatgacaagtttt 489
                |||||||||| |||||| ||  ||||||| |||||||
Sbjct: 4427604 agcagccatatcgaaaatctgtttgaatgataagtttt 4427567



 Score =  133 bits (67), Expect = 6e-28
 Identities = 118/135 (87%)
 Strand = Plus / Minus

                                                                           
Query: 191     ctaaaatttgatcagtttctcgttctttagccataaaagcatctcagctaggccttcagt 250
               |||||| ||||||| ||| || | ||| |||||||| |||||||| | ||| ||||||||
Sbjct: 4427953 ctaaaacttgatcaatttttcatccttgagccataagagcatctctgatagaccttcagt 4427894

                                                                           
Query: 251     caagtttcttggattgtagcccagttccctcttcgctttatcacatgaatacgcccattg 310
                |||||||||||| |||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 4427893 taagtttcttggactgtagcccagctccctcttggctttatcacatgaatatgcccattg 4427834

                              
Query: 311     atgcctaataacacg 325
               ||| |||| ||||||
Sbjct: 4427833 atgtctaagaacacg 4427819



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 121/147 (82%), Gaps = 2/147 (1%)
 Strand = Plus / Minus

                                                                           
Query: 183     gtaggacactaaaatttgatcagtttctc-gttctttagccataaaagcatctcagctag 241
               |||| |||||||||| |||||| |||| | || ||| |||||||| ||| |||| | |||
Sbjct: 4425420 gtagaacactaaaatctgatca-tttcgctgtccttgagccataagagcgtctctgatag 4425362

                                                                           
Query: 242     gccttcagtcaagtttcttggattgtagcccagttccctcttcgctttatcacatgaata 301
                |||||||||||| | || ||| |||| || || ||| |||| || || |||||||| ||
Sbjct: 4425361 accttcagtcaagctcctaggactgtaccctagctccttcttggccttctcacatgagta 4425302

                                          
Query: 302     cgcccattgatgcctaataacacgcac 328
                |||||||||||||||| |||||||||
Sbjct: 4425301 tgcccattgatgcctaagaacacgcac 4425275



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 64/73 (87%), Gaps = 2/73 (2%)
 Strand = Plus / Minus

                                                                           
Query: 377     aactgaaatccacccatatatttcaatcaaccagagtggtacatggaagtatggg-gcct 435
               ||||||||||||||| || ||||||| ||||||||| ||||| ||||| | |||| ||||
Sbjct: 4425070 aactgaaatccacccgtaaatttcaagcaaccagaggggtacgtggaa-tctgggcgcct 4425012

                            
Query: 436     ttgtgtttgtgat 448
               ||||||| |||||
Sbjct: 4425011 ttgtgttcgtgat 4424999



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 369      gaaatgaaaactgaaatccac 389
                |||||||||||||||||||||
Sbjct: 10608075 gaaatgaaaactgaaatccac 10608055



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  147 bits (74), Expect = 4e-32
 Identities = 139/158 (87%), Gaps = 2/158 (1%)
 Strand = Plus / Minus

                                                                           
Query: 333     gggtagctgataagagggagctttccagtgatgcgagaaatgaaaactgaaatccaccca 392
               ||||| |||||||| ||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct: 4427838 gggtaactgataagtgggagatttccagtgatgtgagaaataaaaactgaaatccaccca 4427779

                                                                           
Query: 393     tatatttcaatcaaccagagtggtacatggaagtatggg-gcctttgtgtttgtgatatt 451
               |||||||||||||||||||| ||||||||||| || ||| ||||| || ||||| || ||
Sbjct: 4427778 tatatttcaatcaaccagagaggtacatggaa-taggggtgccttcgtatttgtaatgtt 4427720

                                                     
Query: 452     ggcagccatattgaaaatgtgcatgaatgacaagtttt 489
                |||||||||| |||||| ||  ||||||| |||||||
Sbjct: 4427719 agcagccatatcgaaaatctgtttgaatgataagtttt 4427682



 Score =  133 bits (67), Expect = 6e-28
 Identities = 118/135 (87%)
 Strand = Plus / Minus

                                                                           
Query: 191     ctaaaatttgatcagtttctcgttctttagccataaaagcatctcagctaggccttcagt 250
               |||||| ||||||| ||| || | ||| |||||||| |||||||| | ||| ||||||||
Sbjct: 4428068 ctaaaacttgatcaatttttcatccttgagccataagagcatctctgatagaccttcagt 4428009

                                                                           
Query: 251     caagtttcttggattgtagcccagttccctcttcgctttatcacatgaatacgcccattg 310
                |||||||||||| |||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 4428008 taagtttcttggactgtagcccagctccctcttggctttatcacatgaatatgcccattg 4427949

                              
Query: 311     atgcctaataacacg 325
               ||| |||| ||||||
Sbjct: 4427948 atgtctaagaacacg 4427934



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 121/147 (82%), Gaps = 2/147 (1%)
 Strand = Plus / Minus

                                                                           
Query: 183     gtaggacactaaaatttgatcagtttctc-gttctttagccataaaagcatctcagctag 241
               |||| |||||||||| |||||| |||| | || ||| |||||||| ||| |||| | |||
Sbjct: 4425535 gtagaacactaaaatctgatca-tttcgctgtccttgagccataagagcgtctctgatag 4425477

                                                                           
Query: 242     gccttcagtcaagtttcttggattgtagcccagttccctcttcgctttatcacatgaata 301
                |||||||||||| | || ||| |||| || || ||| |||| || || |||||||| ||
Sbjct: 4425476 accttcagtcaagctcctaggactgtaccctagctccttcttggccttctcacatgagta 4425417

                                          
Query: 302     cgcccattgatgcctaataacacgcac 328
                |||||||||||||||| |||||||||
Sbjct: 4425416 tgcccattgatgcctaagaacacgcac 4425390



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 64/73 (87%), Gaps = 2/73 (2%)
 Strand = Plus / Minus

                                                                           
Query: 377     aactgaaatccacccatatatttcaatcaaccagagtggtacatggaagtatggg-gcct 435
               ||||||||||||||| || ||||||| ||||||||| ||||| ||||| | |||| ||||
Sbjct: 4425185 aactgaaatccacccgtaaatttcaagcaaccagaggggtacgtggaa-tctgggcgcct 4425127

                            
Query: 436     ttgtgtttgtgat 448
               ||||||| |||||
Sbjct: 4425126 ttgtgttcgtgat 4425114



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 369      gaaatgaaaactgaaatccac 389
                |||||||||||||||||||||
Sbjct: 10606176 gaaatgaaaactgaaatccac 10606156



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>gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0042J17, complete sequence
          Length = 171442

 Score =  147 bits (74), Expect = 4e-32
 Identities = 139/158 (87%), Gaps = 2/158 (1%)
 Strand = Plus / Minus

                                                                         
Query: 333   gggtagctgataagagggagctttccagtgatgcgagaaatgaaaactgaaatccaccca 392
             ||||| |||||||| ||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct: 33015 gggtaactgataagtgggagatttccagtgatgtgagaaataaaaactgaaatccaccca 32956

                                                                         
Query: 393   tatatttcaatcaaccagagtggtacatggaagtatggg-gcctttgtgtttgtgatatt 451
             |||||||||||||||||||| ||||||||||| || ||| ||||| || ||||| || ||
Sbjct: 32955 tatatttcaatcaaccagagaggtacatggaa-taggggtgccttcgtatttgtaatgtt 32897

                                                   
Query: 452   ggcagccatattgaaaatgtgcatgaatgacaagtttt 489
              |||||||||| |||||| ||  ||||||| |||||||
Sbjct: 32896 agcagccatatcgaaaatctgtttgaatgataagtttt 32859



 Score =  133 bits (67), Expect = 6e-28
 Identities = 118/135 (87%)
 Strand = Plus / Minus

                                                                         
Query: 191   ctaaaatttgatcagtttctcgttctttagccataaaagcatctcagctaggccttcagt 250
             |||||| ||||||| ||| || | ||| |||||||| |||||||| | ||| ||||||||
Sbjct: 33245 ctaaaacttgatcaatttttcatccttgagccataagagcatctctgatagaccttcagt 33186

                                                                         
Query: 251   caagtttcttggattgtagcccagttccctcttcgctttatcacatgaatacgcccattg 310
              |||||||||||| |||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 33185 taagtttcttggactgtagcccagctccctcttggctttatcacatgaatatgcccattg 33126

                            
Query: 311   atgcctaataacacg 325
             ||| |||| ||||||
Sbjct: 33125 atgtctaagaacacg 33111



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 121/147 (82%), Gaps = 2/147 (1%)
 Strand = Plus / Minus

                                                                         
Query: 183   gtaggacactaaaatttgatcagtttctc-gttctttagccataaaagcatctcagctag 241
             |||| |||||||||| |||||| |||| | || ||| |||||||| ||| |||| | |||
Sbjct: 30712 gtagaacactaaaatctgatca-tttcgctgtccttgagccataagagcgtctctgatag 30654

                                                                         
Query: 242   gccttcagtcaagtttcttggattgtagcccagttccctcttcgctttatcacatgaata 301
              |||||||||||| | || ||| |||| || || ||| |||| || || |||||||| ||
Sbjct: 30653 accttcagtcaagctcctaggactgtaccctagctccttcttggccttctcacatgagta 30594

                                        
Query: 302   cgcccattgatgcctaataacacgcac 328
              |||||||||||||||| |||||||||
Sbjct: 30593 tgcccattgatgcctaagaacacgcac 30567



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 64/73 (87%), Gaps = 2/73 (2%)
 Strand = Plus / Minus

                                                                         
Query: 377   aactgaaatccacccatatatttcaatcaaccagagtggtacatggaagtatggg-gcct 435
             ||||||||||||||| || ||||||| ||||||||| ||||| ||||| | |||| ||||
Sbjct: 30362 aactgaaatccacccgtaaatttcaagcaaccagaggggtacgtggaa-tctgggcgcct 30304

                          
Query: 436   ttgtgtttgtgat 448
             ||||||| |||||
Sbjct: 30303 ttgtgttcgtgat 30291



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>ref|XM_470572.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1026

 Score =  109 bits (55), Expect = 9e-21
 Identities = 189/231 (81%), Gaps = 2/231 (0%)
 Strand = Plus / Minus

                                                                       
Query: 219 agccataaaagcatctcagctaggccttcagtcaagtttcttggattgtagcccagttcc 278
           |||||||| ||| |||| | ||| |||||||||||| | || ||| |||| || || |||
Sbjct: 998 agccataagagcgtctctgatagaccttcagtcaagctcctaggactgtaccctagctcc 939

                                                                       
Query: 279 ctcttcgctttatcacatgaatacgcccattgatgcctaataacacgcaccgtggggtag 338
            |||| || || |||||||| || |||||||||||||||| ||||||||| |  ||||||
Sbjct: 938 ttcttggccttctcacatgagtatgcccattgatgcctaagaacacgcactgcagggtag 879

                                                                       
Query: 339 ctgataagagggagctttccagtgatgcgagaaatgaaaactgaaatccacccatatatt 398
           ||||| |  |||||||| || ||||| |  ||||  | ||||||||||||||| || |||
Sbjct: 878 ctgatgaacgggagcttcccggtgattcttgaaacaagaactgaaatccacccgtaaatt 819

                                                              
Query: 399 tcaatcaaccagagtggtacatggaagtatggg-gcctttgtgtttgtgat 448
           |||| ||||||||| ||||| ||||| | |||| ||||||||||| |||||
Sbjct: 818 tcaagcaaccagaggggtacgtggaa-tctgggcgcctttgtgttcgtgat 769



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>gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
            OSJNBa0032G08, from Chromosome 3, complete sequence
          Length = 122052

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 121/147 (82%), Gaps = 2/147 (1%)
 Strand = Plus / Plus

                                                                        
Query: 183  gtaggacactaaaatttgatcagtttctc-gttctttagccataaaagcatctcagctag 241
            |||| |||||||||| |||||| |||| | || ||| |||||||| ||| |||| | |||
Sbjct: 1077 gtagaacactaaaatctgatca-tttcgctgtccttgagccataagagcgtctctgatag 1135

                                                                        
Query: 242  gccttcagtcaagtttcttggattgtagcccagttccctcttcgctttatcacatgaata 301
             |||||||||||| | || ||| |||| || || ||| |||| || || |||||||| ||
Sbjct: 1136 accttcagtcaagctcctaggactgtaccctagctccttcttggccttctcacatgagta 1195

                                       
Query: 302  cgcccattgatgcctaataacacgcac 328
             |||||||||||||||| |||||||||
Sbjct: 1196 tgcccattgatgcctaagaacacgcac 1222



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 64/73 (87%), Gaps = 2/73 (2%)
 Strand = Plus / Plus

                                                                        
Query: 377  aactgaaatccacccatatatttcaatcaaccagagtggtacatggaagtatggg-gcct 435
            ||||||||||||||| || ||||||| ||||||||| ||||| ||||| | |||| ||||
Sbjct: 1427 aactgaaatccacccgtaaatttcaagcaaccagaggggtacgtggaa-tctgggcgcct 1485

                         
Query: 436  ttgtgtttgtgat 448
            ||||||| |||||
Sbjct: 1486 ttgtgttcgtgat 1498



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>gb|AF359557.1|AF359557 Pseudomonas syringae pv. maculicola plasmid pFKN, complete sequence
          Length = 39554

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 141   tgttctacatgaagcgtgaaatg 163
             |||||||||||||||||||||||
Sbjct: 37376 tgttctacatgaagcgtgaaatg 37398



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>gb|AC079936.7| Oryza sativa (japonica cultivar-group) chromosome X clone
             OSJNBb0061I18, complete sequence
          Length = 143163

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 453   gcagccatattgaaaatgtgc 473
             |||||||||||||||||||||
Sbjct: 49202 gcagccatattgaaaatgtgc 49222



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>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0032G21, from chromosome 3, complete sequence
          Length = 187621

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 369   gaaatgaaaactgaaatccac 389
             |||||||||||||||||||||
Sbjct: 24989 gaaatgaaaactgaaatccac 24969



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>emb|AL445677.1| Human DNA sequence from clone RP11-59D5 on chromosome 6 Contains two
             novel genes, a pseudogene similar to part of
             platelet-activating factor acetylhydrolase variant I alpha
             subunit (PAFAH1B1) and the gene for a novel EGF-like
             domain containing protein, complete sequence
          Length = 84732

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 132   gaaacatcatgttctacatga 152
             |||||||||||||||||||||
Sbjct: 33122 gaaacatcatgttctacatga 33142



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 453      gcagccatattgaaaatgtgc 473
                |||||||||||||||||||||
Sbjct: 12454973 gcagccatattgaaaatgtgc 12454953



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>dbj|AB026636.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14A17
          Length = 92620

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 124   ttagtacagaaacatcatgtt 144
             |||||||||||||||||||||
Sbjct: 20893 ttagtacagaaacatcatgtt 20913



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 453      gcagccatattgaaaatgtgc 473
                |||||||||||||||||||||
Sbjct: 12462313 gcagccatattgaaaatgtgc 12462293



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>dbj|AB007404.1| Oryza sativa gene for alanine aminotransferase, complete cds
          Length = 9289

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 453  gcagccatattgaaaatgtgc 473
            |||||||||||||||||||||
Sbjct: 5254 gcagccatattgaaaatgtgc 5234



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>gb|AC125072.2| Mus musculus BAC clone RP23-458I4 from 3, complete sequence
          Length = 192026

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    taaaatttgatcagtttctc 211
              ||||||||||||||||||||
Sbjct: 143122 taaaatttgatcagtttctc 143103



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>gb|AC146341.10| Medicago truncatula clone mth2-10g1, complete sequence
          Length = 147669

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 461   attgaaaatgtgcatgaatgacaa 484
             ||||| ||||||||||||||||||
Sbjct: 43554 attgacaatgtgcatgaatgacaa 43577



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>gb|AC157578.7| Mus musculus chromosome 3, clone RP24-179O3, complete sequence
          Length = 172143

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    taaaatttgatcagtttctc 211
              ||||||||||||||||||||
Sbjct: 104121 taaaatttgatcagtttctc 104140



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>emb|AJ271736.1|HSA271736 Homo sapiens Xq pseudoautosomal region; segment 2/2
          Length = 158661

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    ttcttcctttctctgaatat 47
             ||||||||||||||||||||
Sbjct: 88427 ttcttcctttctctgaatat 88446



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>gb|AC112249.4| Homo sapiens BAC clone RP11-688H10 from 4, complete sequence
          Length = 146551

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 367   gagaaatgaaaactgaaatc 386
             ||||||||||||||||||||
Sbjct: 11701 gagaaatgaaaactgaaatc 11682



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>emb|BX813333.7| Mouse DNA sequence from clone RP23-255A6 on chromosome 2, complete
              sequence
          Length = 163063

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 436    ttgtgtttgtgatattggcagcca 459
              |||||||||||||||||| |||||
Sbjct: 154087 ttgtgtttgtgatattgggagcca 154064



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>dbj|AP002518.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-64D24, complete
              sequence
          Length = 164795

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 27     tttcttcctttctctgaatatggtggac 54
              |||||||||||| ||| |||||||||||
Sbjct: 143048 tttcttcctttccctgcatatggtggac 143075



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>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome
          Length = 1992676

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 191    ctaaaatttgatcagtttct 210
              ||||||||||||||||||||
Sbjct: 819891 ctaaaatttgatcagtttct 819872



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>gb|AC144761.4| Mus musculus BAC clone RP24-303C2 from 1, complete sequence
          Length = 176981

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 11    aaccagtatcatattgtttcttcctttc 38
             ||||||| ||| ||||||||||||||||
Sbjct: 86472 aaccagtctcaaattgtttcttcctttc 86499



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>gb|AC137584.4| Mus musculus BAC clone RP23-351O20 from 9, complete sequence
          Length = 197108

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 452    ggcagccatattgaaaatgt 471
              ||||||||||||||||||||
Sbjct: 116624 ggcagccatattgaaaatgt 116643



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>emb|AL606509.6| Mouse DNA sequence from clone RP23-415B9 on chromosome 11, complete
              sequence
          Length = 197852

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    aggccttcagtcaagtttct 259
              ||||||||||||||||||||
Sbjct: 150318 aggccttcagtcaagtttct 150337


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,971,191
Number of Sequences: 3902068
Number of extensions: 4971191
Number of successful extensions: 97706
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97451
Number of HSP's gapped (non-prelim): 253
length of query: 489
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 467
effective length of database: 17,147,199,772
effective search space: 8007742293524
effective search space used: 8007742293524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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