No.
Definition
Score (bits)
E Value
1 dbj|AK065264.1| Oryza sativa (japonica cultivar-group) cDNA clon...
240
4e-60
2 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
147
4e-32
3 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
147
4e-32
4 gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome...
147
4e-32
5 ref|XM_470572.1| Oryza sativa (japonica cultivar-group), predic...
109
9e-21
6 gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nippon...
70
7e-09
7 gb|AF359557.1|AF359557 Pseudomonas syringae pv. maculicola plasm...
46
0.11
8 gb|AC079936.7| Oryza sativa (japonica cultivar-group) chromosome...
42
1.7
9 gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare str...
42
1.7
10 emb|AL445677.1| Human DNA sequence from clone RP11-59D5 on chrom...
42
1.7
11 dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D...
42
1.7
12 dbj|AB026636.1| Arabidopsis thaliana genomic DNA, chromosome 3, ...
42
1.7
13 gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome...
42
1.7
14 dbj|AB007404.1| Oryza sativa gene for alanine aminotransferase, ...
42
1.7
15 gb|AC125072.2| Mus musculus BAC clone RP23-458I4 from 3, complet...
40
6.6
16 gb|AC146341.10| Medicago truncatula clone mth2-10g1, complete se...
40
6.6
17 gb|AC157578.7| Mus musculus chromosome 3, clone RP24-179O3, comp...
40
6.6
18 emb|AJ271736.1|HSA271736 Homo sapiens Xq pseudoautosomal region;...
40
6.6
19 gb|AC112249.4| Homo sapiens BAC clone RP11-688H10 from 4, comple...
40
6.6
20 emb|BX813333.7| Mouse DNA sequence from clone RP23-255A6 on chro...
40
6.6
21 dbj|AP002518.3| Homo sapiens genomic DNA, chromosome 11q clone:R...
40
6.6
22 gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome
40
6.6
23 gb|AC144761.4| Mus musculus BAC clone RP24-303C2 from 1, complet...
40
6.6
24 gb|AC137584.4| Mus musculus BAC clone RP23-351O20 from 9, comple...
40
6.6
25 emb|AL606509.6| Mouse DNA sequence from clone RP23-415B9 on chro...
40
6.6
>gb|DP000009.1 | Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 147 bits (74), Expect = 4e-32
Identities = 139/158 (87%), Gaps = 2/158 (1%)
Strand = Plus / Minus
Query: 333 gggtagctgataagagggagctttccagtgatgcgagaaatgaaaactgaaatccaccca 392
||||| |||||||| ||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct: 4427723 gggtaactgataagtgggagatttccagtgatgtgagaaataaaaactgaaatccaccca 4427664
Query: 393 tatatttcaatcaaccagagtggtacatggaagtatggg-gcctttgtgtttgtgatatt 451
|||||||||||||||||||| ||||||||||| || ||| ||||| || ||||| || ||
Sbjct: 4427663 tatatttcaatcaaccagagaggtacatggaa-taggggtgccttcgtatttgtaatgtt 4427605
Query: 452 ggcagccatattgaaaatgtgcatgaatgacaagtttt 489
|||||||||| |||||| || ||||||| |||||||
Sbjct: 4427604 agcagccatatcgaaaatctgtttgaatgataagtttt 4427567
Score = 133 bits (67), Expect = 6e-28
Identities = 118/135 (87%)
Strand = Plus / Minus
Query: 191 ctaaaatttgatcagtttctcgttctttagccataaaagcatctcagctaggccttcagt 250
|||||| ||||||| ||| || | ||| |||||||| |||||||| | ||| ||||||||
Sbjct: 4427953 ctaaaacttgatcaatttttcatccttgagccataagagcatctctgatagaccttcagt 4427894
Query: 251 caagtttcttggattgtagcccagttccctcttcgctttatcacatgaatacgcccattg 310
|||||||||||| |||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 4427893 taagtttcttggactgtagcccagctccctcttggctttatcacatgaatatgcccattg 4427834
Query: 311 atgcctaataacacg 325
||| |||| ||||||
Sbjct: 4427833 atgtctaagaacacg 4427819
Score = 69.9 bits (35), Expect = 7e-09
Identities = 121/147 (82%), Gaps = 2/147 (1%)
Strand = Plus / Minus
Query: 183 gtaggacactaaaatttgatcagtttctc-gttctttagccataaaagcatctcagctag 241
|||| |||||||||| |||||| |||| | || ||| |||||||| ||| |||| | |||
Sbjct: 4425420 gtagaacactaaaatctgatca-tttcgctgtccttgagccataagagcgtctctgatag 4425362
Query: 242 gccttcagtcaagtttcttggattgtagcccagttccctcttcgctttatcacatgaata 301
|||||||||||| | || ||| |||| || || ||| |||| || || |||||||| ||
Sbjct: 4425361 accttcagtcaagctcctaggactgtaccctagctccttcttggccttctcacatgagta 4425302
Query: 302 cgcccattgatgcctaataacacgcac 328
|||||||||||||||| |||||||||
Sbjct: 4425301 tgcccattgatgcctaagaacacgcac 4425275
Score = 58.0 bits (29), Expect = 3e-05
Identities = 64/73 (87%), Gaps = 2/73 (2%)
Strand = Plus / Minus
Query: 377 aactgaaatccacccatatatttcaatcaaccagagtggtacatggaagtatggg-gcct 435
||||||||||||||| || ||||||| ||||||||| ||||| ||||| | |||| ||||
Sbjct: 4425070 aactgaaatccacccgtaaatttcaagcaaccagaggggtacgtggaa-tctgggcgcct 4425012
Query: 436 ttgtgtttgtgat 448
||||||| |||||
Sbjct: 4425011 ttgtgttcgtgat 4424999
Score = 42.1 bits (21), Expect = 1.7
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 369 gaaatgaaaactgaaatccac 389
|||||||||||||||||||||
Sbjct: 10608075 gaaatgaaaactgaaatccac 10608055
>dbj|AP008209.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 147 bits (74), Expect = 4e-32
Identities = 139/158 (87%), Gaps = 2/158 (1%)
Strand = Plus / Minus
Query: 333 gggtagctgataagagggagctttccagtgatgcgagaaatgaaaactgaaatccaccca 392
||||| |||||||| ||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct: 4427838 gggtaactgataagtgggagatttccagtgatgtgagaaataaaaactgaaatccaccca 4427779
Query: 393 tatatttcaatcaaccagagtggtacatggaagtatggg-gcctttgtgtttgtgatatt 451
|||||||||||||||||||| ||||||||||| || ||| ||||| || ||||| || ||
Sbjct: 4427778 tatatttcaatcaaccagagaggtacatggaa-taggggtgccttcgtatttgtaatgtt 4427720
Query: 452 ggcagccatattgaaaatgtgcatgaatgacaagtttt 489
|||||||||| |||||| || ||||||| |||||||
Sbjct: 4427719 agcagccatatcgaaaatctgtttgaatgataagtttt 4427682
Score = 133 bits (67), Expect = 6e-28
Identities = 118/135 (87%)
Strand = Plus / Minus
Query: 191 ctaaaatttgatcagtttctcgttctttagccataaaagcatctcagctaggccttcagt 250
|||||| ||||||| ||| || | ||| |||||||| |||||||| | ||| ||||||||
Sbjct: 4428068 ctaaaacttgatcaatttttcatccttgagccataagagcatctctgatagaccttcagt 4428009
Query: 251 caagtttcttggattgtagcccagttccctcttcgctttatcacatgaatacgcccattg 310
|||||||||||| |||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 4428008 taagtttcttggactgtagcccagctccctcttggctttatcacatgaatatgcccattg 4427949
Query: 311 atgcctaataacacg 325
||| |||| ||||||
Sbjct: 4427948 atgtctaagaacacg 4427934
Score = 69.9 bits (35), Expect = 7e-09
Identities = 121/147 (82%), Gaps = 2/147 (1%)
Strand = Plus / Minus
Query: 183 gtaggacactaaaatttgatcagtttctc-gttctttagccataaaagcatctcagctag 241
|||| |||||||||| |||||| |||| | || ||| |||||||| ||| |||| | |||
Sbjct: 4425535 gtagaacactaaaatctgatca-tttcgctgtccttgagccataagagcgtctctgatag 4425477
Query: 242 gccttcagtcaagtttcttggattgtagcccagttccctcttcgctttatcacatgaata 301
|||||||||||| | || ||| |||| || || ||| |||| || || |||||||| ||
Sbjct: 4425476 accttcagtcaagctcctaggactgtaccctagctccttcttggccttctcacatgagta 4425417
Query: 302 cgcccattgatgcctaataacacgcac 328
|||||||||||||||| |||||||||
Sbjct: 4425416 tgcccattgatgcctaagaacacgcac 4425390
Score = 58.0 bits (29), Expect = 3e-05
Identities = 64/73 (87%), Gaps = 2/73 (2%)
Strand = Plus / Minus
Query: 377 aactgaaatccacccatatatttcaatcaaccagagtggtacatggaagtatggg-gcct 435
||||||||||||||| || ||||||| ||||||||| ||||| ||||| | |||| ||||
Sbjct: 4425185 aactgaaatccacccgtaaatttcaagcaaccagaggggtacgtggaa-tctgggcgcct 4425127
Query: 436 ttgtgtttgtgat 448
||||||| |||||
Sbjct: 4425126 ttgtgttcgtgat 4425114
Score = 42.1 bits (21), Expect = 1.7
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 369 gaaatgaaaactgaaatccac 389
|||||||||||||||||||||
Sbjct: 10606176 gaaatgaaaactgaaatccac 10606156
>gb|AC125471.3 | Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0042J17, complete sequence
Length = 171442
Score = 147 bits (74), Expect = 4e-32
Identities = 139/158 (87%), Gaps = 2/158 (1%)
Strand = Plus / Minus
Query: 333 gggtagctgataagagggagctttccagtgatgcgagaaatgaaaactgaaatccaccca 392
||||| |||||||| ||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct: 33015 gggtaactgataagtgggagatttccagtgatgtgagaaataaaaactgaaatccaccca 32956
Query: 393 tatatttcaatcaaccagagtggtacatggaagtatggg-gcctttgtgtttgtgatatt 451
|||||||||||||||||||| ||||||||||| || ||| ||||| || ||||| || ||
Sbjct: 32955 tatatttcaatcaaccagagaggtacatggaa-taggggtgccttcgtatttgtaatgtt 32897
Query: 452 ggcagccatattgaaaatgtgcatgaatgacaagtttt 489
|||||||||| |||||| || ||||||| |||||||
Sbjct: 32896 agcagccatatcgaaaatctgtttgaatgataagtttt 32859
Score = 133 bits (67), Expect = 6e-28
Identities = 118/135 (87%)
Strand = Plus / Minus
Query: 191 ctaaaatttgatcagtttctcgttctttagccataaaagcatctcagctaggccttcagt 250
|||||| ||||||| ||| || | ||| |||||||| |||||||| | ||| ||||||||
Sbjct: 33245 ctaaaacttgatcaatttttcatccttgagccataagagcatctctgatagaccttcagt 33186
Query: 251 caagtttcttggattgtagcccagttccctcttcgctttatcacatgaatacgcccattg 310
|||||||||||| |||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 33185 taagtttcttggactgtagcccagctccctcttggctttatcacatgaatatgcccattg 33126
Query: 311 atgcctaataacacg 325
||| |||| ||||||
Sbjct: 33125 atgtctaagaacacg 33111
Score = 69.9 bits (35), Expect = 7e-09
Identities = 121/147 (82%), Gaps = 2/147 (1%)
Strand = Plus / Minus
Query: 183 gtaggacactaaaatttgatcagtttctc-gttctttagccataaaagcatctcagctag 241
|||| |||||||||| |||||| |||| | || ||| |||||||| ||| |||| | |||
Sbjct: 30712 gtagaacactaaaatctgatca-tttcgctgtccttgagccataagagcgtctctgatag 30654
Query: 242 gccttcagtcaagtttcttggattgtagcccagttccctcttcgctttatcacatgaata 301
|||||||||||| | || ||| |||| || || ||| |||| || || |||||||| ||
Sbjct: 30653 accttcagtcaagctcctaggactgtaccctagctccttcttggccttctcacatgagta 30594
Query: 302 cgcccattgatgcctaataacacgcac 328
|||||||||||||||| |||||||||
Sbjct: 30593 tgcccattgatgcctaagaacacgcac 30567
Score = 58.0 bits (29), Expect = 3e-05
Identities = 64/73 (87%), Gaps = 2/73 (2%)
Strand = Plus / Minus
Query: 377 aactgaaatccacccatatatttcaatcaaccagagtggtacatggaagtatggg-gcct 435
||||||||||||||| || ||||||| ||||||||| ||||| ||||| | |||| ||||
Sbjct: 30362 aactgaaatccacccgtaaatttcaagcaaccagaggggtacgtggaa-tctgggcgcct 30304
Query: 436 ttgtgtttgtgat 448
||||||| |||||
Sbjct: 30303 ttgtgttcgtgat 30291
>gb|AC079633.9 |AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0032G08, from Chromosome 3, complete sequence
Length = 122052
Score = 69.9 bits (35), Expect = 7e-09
Identities = 121/147 (82%), Gaps = 2/147 (1%)
Strand = Plus / Plus
Query: 183 gtaggacactaaaatttgatcagtttctc-gttctttagccataaaagcatctcagctag 241
|||| |||||||||| |||||| |||| | || ||| |||||||| ||| |||| | |||
Sbjct: 1077 gtagaacactaaaatctgatca-tttcgctgtccttgagccataagagcgtctctgatag 1135
Query: 242 gccttcagtcaagtttcttggattgtagcccagttccctcttcgctttatcacatgaata 301
|||||||||||| | || ||| |||| || || ||| |||| || || |||||||| ||
Sbjct: 1136 accttcagtcaagctcctaggactgtaccctagctccttcttggccttctcacatgagta 1195
Query: 302 cgcccattgatgcctaataacacgcac 328
|||||||||||||||| |||||||||
Sbjct: 1196 tgcccattgatgcctaagaacacgcac 1222
Score = 58.0 bits (29), Expect = 3e-05
Identities = 64/73 (87%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 377 aactgaaatccacccatatatttcaatcaaccagagtggtacatggaagtatggg-gcct 435
||||||||||||||| || ||||||| ||||||||| ||||| ||||| | |||| ||||
Sbjct: 1427 aactgaaatccacccgtaaatttcaagcaaccagaggggtacgtggaa-tctgggcgcct 1485
Query: 436 ttgtgtttgtgat 448
||||||| |||||
Sbjct: 1486 ttgtgttcgtgat 1498
>emb|AL606509.6 | Mouse DNA sequence from clone RP23-415B9 on chromosome 11, complete
sequence
Length = 197852
Score = 40.1 bits (20), Expect = 6.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 240 aggccttcagtcaagtttct 259
||||||||||||||||||||
Sbjct: 150318 aggccttcagtcaagtttct 150337
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,971,191
Number of Sequences: 3902068
Number of extensions: 4971191
Number of successful extensions: 97706
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97451
Number of HSP's gapped (non-prelim): 253
length of query: 489
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 467
effective length of database: 17,147,199,772
effective search space: 8007742293524
effective search space used: 8007742293524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)