Clone Name | rbart26g07 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009523.1| Triticum aestivum clone wr1.pk0107.a5:fis, full insert mRNA sequence Length = 1210 Score = 365 bits (184), Expect = 7e-98 Identities = 332/375 (88%), Gaps = 11/375 (2%) Strand = Plus / Minus Query: 1 aaataaacaaccttattatttcaacctacat--ccaagactgaaacatcacactgctaac 58 ||||| |||||||||||||||| |||||| | ||||| ||||| ||||| |||||| Sbjct: 968 aaatagacaaccttattatttccacctaccagactgagactcaaacagcacaccgctaac 909 Query: 59 tgtcgtaaagaca--acaaacacttttcatcagaaagaacagatgg-agggttaaacctt 115 ||||||||| ||| ||||||| ||||| ||||| ||||||||| |||||||| ||| Sbjct: 908 tgtcgtaaacacacaacaaacatctttcagcagaataaacagatgggagggttaagcctc 849 Query: 116 aa-accttctactacacttcacaagactagtacagagatggatagagcgccggcgcac-- 172 || || ||||||||||||||||| ||| |||||| ||| ||| ||| ||||| Sbjct: 848 aacactttctactacacttcacattgcta---cagagacggaaagaccgcgctcgcacgc 792 Query: 173 acgagctcagtccttcttgaggagatcctccggctcgcggagggtgccaaacagccaatc 232 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 791 acgagctcagtccttcttgaggagatcctccggctcgcggagggtgccaaacagccagtc 732 Query: 233 catccacacggtgtagtggccatagttgtgccggtatgtcgtgtggtggatggtgtggta 292 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 731 catccacacggtgtagtggccatagttgtgccggtacgtcgtgtggtggatggtgtggta 672 Query: 293 accggcgcccatcaccggccagaccttgccgtggatgcagtcgtggatgttggccgtcca 352 |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| Sbjct: 671 gccggcgcccatcaccggccagatcttgccgtggatgcagtcgtggatgtttgccgtcca 612 Query: 353 caccgcctctatgaa 367 ||||||||||||||| Sbjct: 611 caccgcctctatgaa 597
>gb|AY110327.1| Zea mays CL227_1 mRNA sequence Length = 984 Score = 180 bits (91), Expect = 2e-42 Identities = 160/183 (87%) Strand = Plus / Minus Query: 173 acgagctcagtccttcttgaggagatcctccggctcgcggagggtgccaaacagccaatc 232 |||| ||||| |||||||||||| ||| || ||||| ||||| || ||||||| ||| || Sbjct: 676 acgaactcaggccttcttgaggatatcatctggctcacggagcgtaccaaacatccagtc 617 Query: 233 catccacacggtgtagtggccatagttgtgccggtatgtcgtgtggtggatggtgtggta 292 |||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||| || Sbjct: 616 catccagacggtgtagtggccatagttgtggcggtaagtcgtatggtggatggtgtgata 557 Query: 293 accggcgcccatcaccggccagaccttgccgtggatgcagtcgtggatgttggccgtcca 352 || |||||||| || ||||| ||||||||||| ||||||||||||||||| | |||||| Sbjct: 556 cccagcgcccatgactggccataccttgccgtgaatgcagtcgtggatgtttgtcgtcca 497 Query: 353 cac 355 ||| Sbjct: 496 cac 494
>ref|XM_550040.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1242 Score = 161 bits (81), Expect = 2e-36 Identities = 159/185 (85%) Strand = Plus / Minus Query: 183 tccttcttgaggagatcctccggctcgcggagggtgccaaacagccaatccatccacacg 242 |||||||| | || ||| || ||||| || |||||||| |||| ||| |||||||||||| Sbjct: 899 tccttcttcaagatatcttctggctctcgaagggtgccgaacatccagtccatccacacg 840 Query: 243 gtgtagtggccatagttgtgccggtatgtcgtgtggtggatggtgtggtaaccggcgccc 302 |||||||||||||||||||| |||||||| || ||||| |||||||| || || || ||| Sbjct: 839 gtgtagtggccatagttgtgacggtatgttgtatggtgaatggtgtgatagccagcaccc 780 Query: 303 atcaccggccagaccttgccgtggatgcagtcgtggatgttggccgtccacaccgcctct 362 || |||||||| ||||||||||| |||||||| |||||||| | |||||||| |||||| Sbjct: 779 atgaccggccaaaccttgccgtgaatgcagtcatggatgttagttgtccacacggcctct 720 Query: 363 atgaa 367 ||||| Sbjct: 719 atgaa 715
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 161 bits (81), Expect = 2e-36 Identities = 159/185 (85%) Strand = Plus / Minus Query: 183 tccttcttgaggagatcctccggctcgcggagggtgccaaacagccaatccatccacacg 242 |||||||| | || ||| || ||||| || |||||||| |||| ||| |||||||||||| Sbjct: 1890916 tccttcttcaagatatcttctggctctcgaagggtgccgaacatccagtccatccacacg 1890857 Query: 243 gtgtagtggccatagttgtgccggtatgtcgtgtggtggatggtgtggtaaccggcgccc 302 |||||||||||||||||||| |||||||| || ||||| |||||||| || || || ||| Sbjct: 1890856 gtgtagtggccatagttgtgacggtatgttgtatggtgaatggtgtgatagccagcaccc 1890797 Query: 303 atcaccggccagaccttgccgtggatgcagtcgtggatgttggccgtccacaccgcctct 362 || |||||||| ||||||||||| |||||||| |||||||| | |||||||| |||||| Sbjct: 1890796 atgaccggccaaaccttgccgtgaatgcagtcatggatgttagttgtccacacggcctct 1890737 Query: 363 atgaa 367 ||||| Sbjct: 1890736 atgaa 1890732
>dbj|AP003214.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0083M16 Length = 179428 Score = 161 bits (81), Expect = 2e-36 Identities = 159/185 (85%) Strand = Plus / Minus Query: 183 tccttcttgaggagatcctccggctcgcggagggtgccaaacagccaatccatccacacg 242 |||||||| | || ||| || ||||| || |||||||| |||| ||| |||||||||||| Sbjct: 132298 tccttcttcaagatatcttctggctctcgaagggtgccgaacatccagtccatccacacg 132239 Query: 243 gtgtagtggccatagttgtgccggtatgtcgtgtggtggatggtgtggtaaccggcgccc 302 |||||||||||||||||||| |||||||| || ||||| |||||||| || || || ||| Sbjct: 132238 gtgtagtggccatagttgtgacggtatgttgtatggtgaatggtgtgatagccagcaccc 132179 Query: 303 atcaccggccagaccttgccgtggatgcagtcgtggatgttggccgtccacaccgcctct 362 || |||||||| ||||||||||| |||||||| |||||||| | |||||||| |||||| Sbjct: 132178 atgaccggccaaaccttgccgtgaatgcagtcatggatgttagttgtccacacggcctct 132119 Query: 363 atgaa 367 ||||| Sbjct: 132118 atgaa 132114
>dbj|AK112014.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-G10, full insert sequence Length = 1242 Score = 161 bits (81), Expect = 2e-36 Identities = 159/185 (85%) Strand = Plus / Minus Query: 183 tccttcttgaggagatcctccggctcgcggagggtgccaaacagccaatccatccacacg 242 |||||||| | || ||| || ||||| || |||||||| |||| ||| |||||||||||| Sbjct: 899 tccttcttcaagatatcttctggctctcgaagggtgccgaacatccagtccatccacacg 840 Query: 243 gtgtagtggccatagttgtgccggtatgtcgtgtggtggatggtgtggtaaccggcgccc 302 |||||||||||||||||||| |||||||| || ||||| |||||||| || || || ||| Sbjct: 839 gtgtagtggccatagttgtgacggtatgttgtatggtgaatggtgtgatagccagcaccc 780 Query: 303 atcaccggccagaccttgccgtggatgcagtcgtggatgttggccgtccacaccgcctct 362 || |||||||| ||||||||||| |||||||| |||||||| | |||||||| |||||| Sbjct: 779 atgaccggccaaaccttgccgtgaatgcagtcatggatgttagttgtccacacggcctct 720 Query: 363 atgaa 367 ||||| Sbjct: 719 atgaa 715
>dbj|AK111908.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069O22, full insert sequence Length = 1253 Score = 161 bits (81), Expect = 2e-36 Identities = 159/185 (85%) Strand = Plus / Minus Query: 183 tccttcttgaggagatcctccggctcgcggagggtgccaaacagccaatccatccacacg 242 |||||||| | || ||| || ||||| || |||||||| |||| ||| |||||||||||| Sbjct: 907 tccttcttcaagatatcttctggctctcgaagggtgccgaacatccagtccatccacacg 848 Query: 243 gtgtagtggccatagttgtgccggtatgtcgtgtggtggatggtgtggtaaccggcgccc 302 |||||||||||||||||||| |||||||| || ||||| |||||||| || || || ||| Sbjct: 847 gtgtagtggccatagttgtgacggtatgttgtatggtgaatggtgtgatagccagcaccc 788 Query: 303 atcaccggccagaccttgccgtggatgcagtcgtggatgttggccgtccacaccgcctct 362 || |||||||| ||||||||||| |||||||| |||||||| | |||||||| |||||| Sbjct: 787 atgaccggccaaaccttgccgtgaatgcagtcatggatgttagttgtccacacggcctct 728 Query: 363 atgaa 367 ||||| Sbjct: 727 atgaa 723
>gb|BT016653.1| Zea mays clone Contig486 mRNA sequence Length = 1189 Score = 157 bits (79), Expect = 3e-35 Identities = 157/183 (85%) Strand = Plus / Minus Query: 173 acgagctcagtccttcttgaggagatcctccggctcgcggagggtgccaaacagccaatc 232 |||| ||||| |||||||||||| ||| || ||||| ||||| || ||||||| ||| || Sbjct: 942 acgaactcaggccttcttgaggatatcatctggctcacggagcgtaccaaacatccagtc 883 Query: 233 catccacacggtgtagtggccatagttgtgccggtatgtcgtgtggtggatggtgtggta 292 |||||| ||||||||||| ||||||||||| ||||| ||||| |||||||||||||| || Sbjct: 882 catccagacggtgtagtgaccatagttgtggcggtaagtcgtatggtggatggtgtgata 823 Query: 293 accggcgcccatcaccggccagaccttgccgtggatgcagtcgtggatgttggccgtcca 352 || || ||||| || ||||| | ||||||||| ||||||||||||||||| | |||||| Sbjct: 822 ccccgctcccatgactggccataacttgccgtgaatgcagtcgtggatgtttgtcgtcca 763 Query: 353 cac 355 ||| Sbjct: 762 cac 760
>gb|BT019106.1| Zea mays clone Contig708.F mRNA sequence Length = 650 Score = 149 bits (75), Expect = 7e-33 Identities = 156/183 (85%) Strand = Plus / Minus Query: 173 acgagctcagtccttcttgaggagatcctccggctcgcggagggtgccaaacagccaatc 232 |||| ||||| |||||||||||| ||| || || || ||||| || ||||||| ||| || Sbjct: 414 acgaactcaggccttcttgaggatatcatctgggtcacggagcgtaccaaacatccagtc 355 Query: 233 catccacacggtgtagtggccatagttgtgccggtatgtcgtgtggtggatggtgtggta 292 |||||| ||||||||||| ||||||||||| ||||| ||||| |||||||||||||| || Sbjct: 354 catccagacggtgtagtgaccatagttgtggcggtaagtcgtatggtggatggtgtgata 295 Query: 293 accggcgcccatcaccggccagaccttgccgtggatgcagtcgtggatgttggccgtcca 352 || || ||||| || ||||| | ||||||||| ||||||||||||||||| | |||||| Sbjct: 294 ccccgctcccatgactggccataacttgccgtgaatgcagtcgtggatgtttgtcgtcca 235 Query: 353 cac 355 ||| Sbjct: 234 cac 232
>gb|DQ415921.1| Cleome spinosa clone BAC Cs2, complete sequence Length = 132380 Score = 121 bits (61), Expect = 2e-24 Identities = 127/149 (85%) Strand = Plus / Minus Query: 219 ccaaacagccaatccatccacacggtgtagtggccatagttgtgccggtatgtcgtgtgg 278 ||||||| |||||||||||| | |||||| ||||| ||||| ||| ||| || |||||| Sbjct: 131210 ccaaacatccaatccatccaaatggtgtaatggccgtagttatgcttgtaagttgtgtgg 131151 Query: 279 tggatggtgtggtaaccggcgcccatcaccggccagaccttgccgtggatgcagtcgtgg 338 || ||||||||||| || || ||||| || ||||||| ||||| ||||||||||||||| Sbjct: 131150 tgtatggtgtggtatccagctcccattacaggccagatgttgccatggatgcagtcgtgg 131091 Query: 339 atgttggccgtccacaccgcctctatgaa 367 |||||||||||||| || ||||| ||||| Sbjct: 131090 atgttggccgtccatacggcctccatgaa 131062
>ref|NM_111126.2| Arabidopsis thaliana STE1 (STEROL 1); C-5 sterol desaturase AT3G02580 (STE1) mRNA, complete cds Length = 1169 Score = 93.7 bits (47), Expect = 4e-16 Identities = 113/135 (83%) Strand = Plus / Minus Query: 218 gccaaacagccaatccatccacacggtgtagtggccatagttgtgccggtatgtcgtgtg 277 |||||||| |||||||||||| | ||| || || |||||||| ||| |||||||||||| Sbjct: 928 gccaaacatccaatccatccatatggtataatgaccatagttatgcttgtatgtcgtgtg 869 Query: 278 gtggatggtgtggtaaccggcgcccatcaccggccagaccttgccgtggatgcagtcgtg 337 ||| || || ||||| || || ||||| || ||||||| ||||| ||||||||||| || Sbjct: 868 gtgtatcgtatggtatcctgcacccattactggccagatgttgccatggatgcagtcatg 809 Query: 338 gatgttggccgtcca 352 |||||| |||||||| Sbjct: 808 gatgttcgccgtcca 794
>gb|AC021640.7|ATAC021640 Arabidopsis thaliana chromosome III BAC F16B3 genomic sequence, complete sequence Length = 103904 Score = 93.7 bits (47), Expect = 4e-16 Identities = 113/135 (83%) Strand = Plus / Minus Query: 218 gccaaacagccaatccatccacacggtgtagtggccatagttgtgccggtatgtcgtgtg 277 |||||||| |||||||||||| | ||| || || |||||||| ||| |||||||||||| Sbjct: 64193 gccaaacatccaatccatccatatggtataatgaccatagttatgcttgtatgtcgtgtg 64134 Query: 278 gtggatggtgtggtaaccggcgcccatcaccggccagaccttgccgtggatgcagtcgtg 337 ||| || || ||||| || || ||||| || ||||||| ||||| ||||||||||| || Sbjct: 64133 gtgtatcgtatggtatcctgcacccattactggccagatgttgccatggatgcagtcatg 64074 Query: 338 gatgttggccgtcca 352 |||||| |||||||| Sbjct: 64073 gatgttcgccgtcca 64059
>gb|AY088527.1| Arabidopsis thaliana clone 7564 mRNA, complete sequence Length = 1163 Score = 93.7 bits (47), Expect = 4e-16 Identities = 113/135 (83%) Strand = Plus / Minus Query: 218 gccaaacagccaatccatccacacggtgtagtggccatagttgtgccggtatgtcgtgtg 277 |||||||| |||||||||||| | ||| || || |||||||| ||| |||||||||||| Sbjct: 928 gccaaacatccaatccatccatatggtataatgaccatagttatgcttgtatgtcgtgtg 869 Query: 278 gtggatggtgtggtaaccggcgcccatcaccggccagaccttgccgtggatgcagtcgtg 337 ||| || || ||||| || || ||||| || ||||||| ||||| ||||||||||| || Sbjct: 868 gtgtatcgtatggtatcctgcacccattactggccagatgttgccatggatgcagtcatg 809 Query: 338 gatgttggccgtcca 352 |||||| |||||||| Sbjct: 808 gatgttcgccgtcca 794
>dbj|AK176721.1| Arabidopsis thaliana mRNA for sterol-C5-desaturase, complete cds, clone: RAFL25-26-E18 Length = 1113 Score = 93.7 bits (47), Expect = 4e-16 Identities = 113/135 (83%) Strand = Plus / Minus Query: 218 gccaaacagccaatccatccacacggtgtagtggccatagttgtgccggtatgtcgtgtg 277 |||||||| |||||||||||| | ||| || || |||||||| ||| |||||||||||| Sbjct: 905 gccaaacatccaatccatccatatggtataatgaccatagttatgcttgtatgtcgtgtg 846 Query: 278 gtggatggtgtggtaaccggcgcccatcaccggccagaccttgccgtggatgcagtcgtg 337 ||| || || ||||| || || ||||| || ||||||| ||||| ||||||||||| || Sbjct: 845 gtgtatcgtatggtatcctgcacccattactggccagatgttgccatggatgcagtcatg 786 Query: 338 gatgttggccgtcca 352 |||||| |||||||| Sbjct: 785 gatgttcgccgtcca 771
>gb|AF105034.1|AF105034 Arabidopsis thaliana delta7 sterol C-5 desaturase (STE1) gene, complete cds Length = 2294 Score = 93.7 bits (47), Expect = 4e-16 Identities = 113/135 (83%) Strand = Plus / Minus Query: 218 gccaaacagccaatccatccacacggtgtagtggccatagttgtgccggtatgtcgtgtg 277 |||||||| |||||||||||| | ||| || || |||||||| ||| |||||||||||| Sbjct: 1646 gccaaacatccaatccatccatatggtataatgaccatagttatgcttgtatgtcgtgtg 1587 Query: 278 gtggatggtgtggtaaccggcgcccatcaccggccagaccttgccgtggatgcagtcgtg 337 ||| || || ||||| || || ||||| || ||||||| ||||| ||||||||||| || Sbjct: 1586 gtgtatcgtatggtatcctgcacccattactggccagatgttgccatggatgcagtcatg 1527 Query: 338 gatgttggccgtcca 352 |||||| |||||||| Sbjct: 1526 gatgttcgccgtcca 1512
>gb|AF069468.1|AF069468 Arabidopsis thaliana sterol-C5-desaturase gene, complete cds Length = 3004 Score = 93.7 bits (47), Expect = 4e-16 Identities = 113/135 (83%) Strand = Plus / Minus Query: 218 gccaaacagccaatccatccacacggtgtagtggccatagttgtgccggtatgtcgtgtg 277 |||||||| |||||||||||| | ||| || || |||||||| ||| |||||||||||| Sbjct: 2746 gccaaacatccaatccatccatatggtataatgaccatagttatgcttgtatgtcgtgtg 2687 Query: 278 gtggatggtgtggtaaccggcgcccatcaccggccagaccttgccgtggatgcagtcgtg 337 ||| || || ||||| || || ||||| || ||||||| ||||| ||||||||||| || Sbjct: 2686 gtgtatcgtatggtatcctgcacccattactggccagatgttgccatggatgcagtcatg 2627 Query: 338 gatgttggccgtcca 352 |||||| |||||||| Sbjct: 2626 gatgttcgccgtcca 2612
>emb|X90454.1|ATRNASC5D A.thaliana mRNA for sterol-C5-desaturase Length = 1175 Score = 85.7 bits (43), Expect = 9e-14 Identities = 109/131 (83%) Strand = Plus / Minus Query: 218 gccaaacagccaatccatccacacggtgtagtggccatagttgtgccggtatgtcgtgtg 277 |||||||| |||||||||||| | ||| || || |||||||| ||| |||||||||||| Sbjct: 900 gccaaacatccaatccatccatatggtataatgaccatagttatgcttgtatgtcgtgtg 841 Query: 278 gtggatggtgtggtaaccggcgcccatcaccggccagaccttgccgtggatgcagtcgtg 337 ||| || || ||||| || || ||||| || ||||||| ||||| ||||||||||| || Sbjct: 840 gtgtatcgtatggtatcctgcacccattactggccagatgttgccatggatgcagtcatg 781 Query: 338 gatgttggccg 348 |||||| |||| Sbjct: 780 gatgttcgccg 770
>gb|DQ122180.1| Gossypium hirsutum sterol-C5-desaturase DWF7 mRNA, partial cds Length = 921 Score = 79.8 bits (40), Expect = 6e-12 Identities = 115/140 (82%) Strand = Plus / Minus Query: 213 agggtgccaaacagccaatccatccacacggtgtagtggccatagttgtgccggtatgtc 272 ||||| |||| || |||||||||||| | |||||| ||||||||||| || || || || Sbjct: 395 agggttccaagcatccaatccatccaaatggtgtaatggccatagttatggcgatacgta 336 Query: 273 gtgtggtggatggtgtggtaaccggcgcccatcaccggccagaccttgccgtggatgcag 332 |||||||| || |||||||| || || |||||||| ||||| | ||||| |||||||| Sbjct: 335 gtgtggtgaatagtgtggtacccagcacccatcacaggccatagtttgccatggatgcaa 276 Query: 333 tcgtggatgttggccgtcca 352 || || ||||| |||||||| Sbjct: 275 tcatgaatgtttgccgtcca 256
>dbj|AB231157.1| Zinnia elegans ZeSTE1 mRNA for delta7 sterol C-5 desaturase, complete cds Length = 1104 Score = 63.9 bits (32), Expect = 3e-07 Identities = 113/140 (80%) Strand = Plus / Minus Query: 213 agggtgccaaacagccaatccatccacacggtgtagtggccatagttgtgccggtatgtc 272 ||||| || |||| ||| |||||||| || || || || |||||||| ||||||||||| Sbjct: 779 agggtaccgaacatccagtccatccaaactgtataatgcccatagttatgccggtatgtg 720 Query: 273 gtgtggtggatggtgtggtaaccggcgcccatcaccggccagaccttgccgtggatgcag 332 ||||| || || |||||||| || || ||||| |||||||| | ||| || || ||||| Sbjct: 719 gtgtgatgaattgtgtggtaccctgcacccattaccggccaaaacttcccatgaatgcaa 660 Query: 333 tcgtggatgttggccgtcca 352 ||||| ||||| || ||||| Sbjct: 659 tcgtgaatgtttgctgtcca 640
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 46.1 bits (23), Expect = 0.079 Identities = 23/23 (100%) Strand = Plus / Plus Query: 302 catcaccggccagaccttgccgt 324 ||||||||||||||||||||||| Sbjct: 766132 catcaccggccagaccttgccgt 766154
>gb|AF099969.1|AF099969 Nicotiana tabacum sterol-C5(6)-desaturase homolog mRNA, complete cds Length = 1148 Score = 44.1 bits (22), Expect = 0.31 Identities = 79/98 (80%) Strand = Plus / Minus Query: 222 aacagccaatccatccacacggtgtagtggccatagttgtgccggtatgtcgtgtggtgg 281 |||| ||| |||||||| | ||||| || ||||| || |||||||| || || |||||| Sbjct: 896 aacatccagtccatccatattgtgtaatgaccataattatgccggtacgtagtatggtgg 837 Query: 282 atggtgtggtaaccggcgcccatcaccggccagacctt 319 ||||| ||||| || || ||||| || ||||| ||||| Sbjct: 836 atggtatggtagccagcacccataactggccacacctt 799
>ref|XM_643170.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (495.t00001) partial mRNA Length = 435 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1 aaataaacaaccttattatttcaac 25 |||||||||| |||||||||||||| Sbjct: 311 aaataaacaatcttattatttcaac 335
>gb|AC158675.4| Mus musculus 6 BAC RP23-180J21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226948 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 aagactagtacagagatggat 157 ||||||||||||||||||||| Sbjct: 35125 aagactagtacagagatggat 35145
>ref|XM_366390.1| Magnaporthe grisea 70-15 hypothetical protein (MG10608.4) partial mRNA Length = 5289 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 ggatgcagtcgtggatgttg 344 |||||||||||||||||||| Sbjct: 1747 ggatgcagtcgtggatgttg 1728
>gb|AC135780.2| Homo sapiens chromosome 16 clone CTD-2320F3, complete sequence Length = 125603 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 atcagaaagaacagatggag 104 |||||||||||||||||||| Sbjct: 38511 atcagaaagaacagatggag 38530
>emb|AL360224.14| Human DNA sequence from clone RP11-471A8 on chromosome Xq22.2-23 Contains the 5' end of a novel gene (FLJ22679, FLJ36808) and a CpG island, complete sequence Length = 157162 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gaaagaacagatggagggtt 108 |||||||||||||||||||| Sbjct: 16740 gaaagaacagatggagggtt 16759
>gb|AC025161.18| Homo sapiens 12 BAC RP11-669B18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 83265 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 caagactgaaacatcacact 52 |||||||||||||||||||| Sbjct: 14484 caagactgaaacatcacact 14503
>emb|AL121984.14|HSA277C14 Human DNA sequence from clone RP11-277C14 on chromosome 1 Contains part of the DNM3 gene for dynamin 3, complete sequence Length = 155941 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ttcacaagactagtacagag 151 |||||||||||||||||||| Sbjct: 48119 ttcacaagactagtacagag 48138
>emb|AL121988.10|HSDJ34M23 Human DNA sequence from clone RP1-34M23 on chromosome 1p34.3-36.11 Contains the 3' end of a variant of a novel gene, the GJB5 gene for gap junction protein, beta 5 (connexin 31.1), the GJB4 gene for gap junction protein, beta 4 (connexin 30.3), the GJB3 gene for gap junction protein, beta 3, 31kDa (connexin 31) and the GJA4 gene for gap junction protein, alpha 4, 37kDa (connexin 37), complete sequence Length = 126876 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 tcatcagaaagaacagatgg 102 |||||||||||||||||||| Sbjct: 98333 tcatcagaaagaacagatgg 98314
>ref|XM_794677.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC575235 (LOC575235), mRNA Length = 816 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 219 ccaaacagccaatccatccacacggtgt 246 |||||||||||||||| ||||| ||||| Sbjct: 101 ccaaacagccaatccagccacagggtgt 128
>gb|AC116667.2| Homo sapiens chromosome 16 clone RP11-346C20, complete sequence Length = 156100 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 atcagaaagaacagatggag 104 |||||||||||||||||||| Sbjct: 73130 atcagaaagaacagatggag 73111
>gb|AF081794.1|AF081794 Nicotiana tabacum sterol-C5(6)-desaturase mRNA, complete cds Length = 1155 Score = 40.1 bits (20), Expect = 4.9 Identities = 56/68 (82%) Strand = Plus / Minus Query: 219 ccaaacagccaatccatccacacggtgtagtggccatagttgtgccggtatgtcgtgtgg 278 ||||||| |||||||||||| | ||||| || ||||| || || ||||||||| | ||| Sbjct: 875 ccaaacatccaatccatccatattgtgtaatgaccataattatggcggtatgtcctatgg 816 Query: 279 tggatggt 286 || ||||| Sbjct: 815 tgaatggt 808
>emb|CR848665.9| Zebrafish DNA sequence from clone CH211-276C2 in linkage group 15, complete sequence Length = 158232 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 atcagaaagaacagatggag 104 |||||||||||||||||||| Sbjct: 129167 atcagaaagaacagatggag 129186 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,752,485 Number of Sequences: 3902068 Number of extensions: 2752485 Number of successful extensions: 48647 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48587 Number of HSP's gapped (non-prelim): 59 length of query: 367 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 345 effective length of database: 17,147,199,772 effective search space: 5915783921340 effective search space used: 5915783921340 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)