Clone Name | rbart26g06 |
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Clone Library Name | barley_pub |
>ref|XM_479525.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1283 Score = 113 bits (57), Expect = 2e-22 Identities = 99/113 (87%) Strand = Plus / Minus Query: 93 ttgtaaattgtatctgagcagctttgcatcccggcccttcctgaaccaaggatgttccat 152 ||||| ||| |||||||||||||||||||| | |||||||| |||||||||| |||||| Sbjct: 696 ttgtagattatatctgagcagctttgcatcgagacccttcctaaaccaaggattttccat 637 Query: 153 gattttctcaatcgagatccttgtgctggggttaggatcaagaatccttagca 205 |||||| || || ||||||||||| || |||||||||||||| ||||| |||| Sbjct: 636 gattttgtccattgagatccttgtacttgggttaggatcaagtatcctgagca 584
>ref|XM_479524.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2108 Score = 113 bits (57), Expect = 2e-22 Identities = 99/113 (87%) Strand = Plus / Minus Query: 93 ttgtaaattgtatctgagcagctttgcatcccggcccttcctgaaccaaggatgttccat 152 ||||| ||| |||||||||||||||||||| | |||||||| |||||||||| |||||| Sbjct: 1367 ttgtagattatatctgagcagctttgcatcgagacccttcctaaaccaaggattttccat 1308 Query: 153 gattttctcaatcgagatccttgtgctggggttaggatcaagaatccttagca 205 |||||| || || ||||||||||| || |||||||||||||| ||||| |||| Sbjct: 1307 gattttgtccattgagatccttgtacttgggttaggatcaagtatcctgagca 1255
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 113 bits (57), Expect = 2e-22 Identities = 99/113 (87%) Strand = Plus / Plus Query: 93 ttgtaaattgtatctgagcagctttgcatcccggcccttcctgaaccaaggatgttccat 152 ||||| ||| |||||||||||||||||||| | |||||||| |||||||||| |||||| Sbjct: 28673980 ttgtagattatatctgagcagctttgcatcgagacccttcctaaaccaaggattttccat 28674039 Query: 153 gattttctcaatcgagatccttgtgctggggttaggatcaagaatccttagca 205 |||||| || || ||||||||||| || |||||||||||||| ||||| |||| Sbjct: 28674040 gattttgtccattgagatccttgtacttgggttaggatcaagtatcctgagca 28674092
>dbj|AK072868.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141O10, full insert sequence Length = 2108 Score = 113 bits (57), Expect = 2e-22 Identities = 99/113 (87%) Strand = Plus / Minus Query: 93 ttgtaaattgtatctgagcagctttgcatcccggcccttcctgaaccaaggatgttccat 152 ||||| ||| |||||||||||||||||||| | |||||||| |||||||||| |||||| Sbjct: 1367 ttgtagattatatctgagcagctttgcatcgagacccttcctaaaccaaggattttccat 1308 Query: 153 gattttctcaatcgagatccttgtgctggggttaggatcaagaatccttagca 205 |||||| || || ||||||||||| || |||||||||||||| ||||| |||| Sbjct: 1307 gattttgtccattgagatccttgtacttgggttaggatcaagtatcctgagca 1255
>dbj|AK059418.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-D08, full insert sequence Length = 1229 Score = 113 bits (57), Expect = 2e-22 Identities = 99/113 (87%) Strand = Plus / Minus Query: 93 ttgtaaattgtatctgagcagctttgcatcccggcccttcctgaaccaaggatgttccat 152 ||||| ||| |||||||||||||||||||| | |||||||| |||||||||| |||||| Sbjct: 647 ttgtagattatatctgagcagctttgcatcgagacccttcctaaaccaaggattttccat 588 Query: 153 gattttctcaatcgagatccttgtgctggggttaggatcaagaatccttagca 205 |||||| || || ||||||||||| || |||||||||||||| ||||| |||| Sbjct: 587 gattttgtccattgagatccttgtacttgggttaggatcaagtatcctgagca 535
>dbj|AK058819.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-G04, full insert sequence Length = 1283 Score = 113 bits (57), Expect = 2e-22 Identities = 99/113 (87%) Strand = Plus / Minus Query: 93 ttgtaaattgtatctgagcagctttgcatcccggcccttcctgaaccaaggatgttccat 152 ||||| ||| |||||||||||||||||||| | |||||||| |||||||||| |||||| Sbjct: 696 ttgtagattatatctgagcagctttgcatcgagacccttcctaaaccaaggattttccat 637 Query: 153 gattttctcaatcgagatccttgtgctggggttaggatcaagaatccttagca 205 |||||| || || ||||||||||| || |||||||||||||| ||||| |||| Sbjct: 636 gattttgtccattgagatccttgtacttgggttaggatcaagtatcctgagca 584
>dbj|AP003757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1409_C08 Length = 90673 Score = 113 bits (57), Expect = 2e-22 Identities = 99/113 (87%) Strand = Plus / Plus Query: 93 ttgtaaattgtatctgagcagctttgcatcccggcccttcctgaaccaaggatgttccat 152 ||||| ||| |||||||||||||||||||| | |||||||| |||||||||| |||||| Sbjct: 49150 ttgtagattatatctgagcagctttgcatcgagacccttcctaaaccaaggattttccat 49209 Query: 153 gattttctcaatcgagatccttgtgctggggttaggatcaagaatccttagca 205 |||||| || || ||||||||||| || |||||||||||||| ||||| |||| Sbjct: 49210 gattttgtccattgagatccttgtacttgggttaggatcaagtatcctgagca 49262
>gb|AY107513.1| Zea mays PCO092477 mRNA sequence Length = 1254 Score = 77.8 bits (39), Expect = 1e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 127 cccttcctgaaccaaggatgttccatgattttctcaatcgagatccttgtgctggggtta 186 |||||||| ||||| |||| ||||||||||| || |||||||||||| | || |||||| Sbjct: 497 cccttcctaaaccatggattctccatgattttttccatcgagatccttctactagggtta 438 Query: 187 ggatcaagaatcctt 201 ||||||||||||||| Sbjct: 437 ggatcaagaatcctt 423
>gb|BT023864.1| Drosophila melanogaster IP03633 full insert cDNA Length = 947 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 aaaattgcagtcatgtcaaa 71 |||||||||||||||||||| Sbjct: 765 aaaattgcagtcatgtcaaa 746
>emb|AL359182.20| Human DNA sequence from clone RP11-217B7 on chromosome 9 Contains the 5' end of the ABCA1 gene for ATP-binding cassette sub-family A (ABC1) member 1, two novel genes and two CpG islands, complete sequence Length = 96717 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 tcttggtccttgccttcaattgct 27 |||||||||||||| ||||||||| Sbjct: 48126 tcttggtccttgccctcaattgct 48103
>ref|NM_080363.5| Drosophila melanogaster Gustatory receptor 33a CG17213-RA (Gr33a), mRNA Length = 1428 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 aaaattgcagtcatgtcaaa 71 |||||||||||||||||||| Sbjct: 1403 aaaattgcagtcatgtcaaa 1384
>gb|AF287262.1|AF287262 Homo sapiens ATP-binding cassette 1 sub-family A member 1 (ABCA1) and SNAP protein genes, complete cds Length = 201144 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 4 tcttggtccttgccttcaattgct 27 |||||||||||||| ||||||||| Sbjct: 3190 tcttggtccttgccctcaattgct 3213
>gb|AC011066.5|AC011066 Drosophila melanogaster, chromosome 2L, region 33B-33C, BAC clone BACR02B06, complete sequence Length = 174314 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 aaaattgcagtcatgtcaaa 71 |||||||||||||||||||| Sbjct: 131128 aaaattgcagtcatgtcaaa 131109
>emb|BX511156.5| Zebrafish DNA sequence from clone DKEY-1M1 in linkage group 2, complete sequence Length = 158656 Score = 40.1 bits (20), Expect = 2.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 94 tgtaaattgtatctgagcagctttgcat 121 |||| ||||||||| ||||||||||||| Sbjct: 56412 tgtagattgtatctaagcagctttgcat 56439
>gb|AC007137.20|AC007137 Drosophila melanogaster, chromosome 2L, region 36E-, BAC clone BACR25C02, complete sequence Length = 171454 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 aaaattgcagtcatgtcaaa 71 |||||||||||||||||||| Sbjct: 116171 aaaattgcagtcatgtcaaa 116152
>gb|AE003660.2| Drosophila melanogaster chromosome 2L, section 69 of 83 of the complete sequence Length = 232737 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 aaaattgcagtcatgtcaaa 71 |||||||||||||||||||| Sbjct: 2329 aaaattgcagtcatgtcaaa 2310
>gb|AE003635.2| Drosophila melanogaster chromosome 2L, section 44 of 83 of the complete sequence Length = 308012 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 aaaattgcagtcatgtcaaa 71 |||||||||||||||||||| Sbjct: 50604 aaaattgcagtcatgtcaaa 50585
>emb|BX322593.12| Zebrafish DNA sequence from clone CH211-249E14 in linkage group 2, complete sequence Length = 82337 Score = 40.1 bits (20), Expect = 2.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 94 tgtaaattgtatctgagcagctttgcat 121 |||| ||||||||| ||||||||||||| Sbjct: 47713 tgtagattgtatctaagcagctttgcat 47740 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,206,327 Number of Sequences: 3902068 Number of extensions: 2206327 Number of successful extensions: 149437 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 149353 Number of HSP's gapped (non-prelim): 84 length of query: 209 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 187 effective length of database: 17,147,199,772 effective search space: 3206526357364 effective search space used: 3206526357364 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)