ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart26g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_479525.1| Oryza sativa (japonica cultivar-group), mRNA 113 2e-22
2ref|XM_479524.1| Oryza sativa (japonica cultivar-group), mRNA 113 2e-22
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 113 2e-22
4dbj|AK072868.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 2e-22
5dbj|AK059418.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 2e-22
6dbj|AK058819.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 2e-22
7dbj|AP003757.2| Oryza sativa (japonica cultivar-group) genomic D... 113 2e-22
8gb|AY107513.1| Zea mays PCO092477 mRNA sequence 78 1e-11
9gb|BT023864.1| Drosophila melanogaster IP03633 full insert cDNA 40 2.6
10emb|AL359182.20| Human DNA sequence from clone RP11-217B7 on chr... 40 2.6
11ref|NM_080363.5| Drosophila melanogaster Gustatory receptor 33a ... 40 2.6
12gb|AF287262.1|AF287262 Homo sapiens ATP-binding cassette 1 sub-f... 40 2.6
13gb|AC011066.5|AC011066 Drosophila melanogaster, chromosome 2L, r... 40 2.6
14emb|BX511156.5| Zebrafish DNA sequence from clone DKEY-1M1 in li... 40 2.6
15gb|AC007137.20|AC007137 Drosophila melanogaster, chromosome 2L, ... 40 2.6
16gb|AE003660.2| Drosophila melanogaster chromosome 2L, section 69... 40 2.6
17gb|AE003635.2| Drosophila melanogaster chromosome 2L, section 44... 40 2.6
18emb|BX322593.12| Zebrafish DNA sequence from clone CH211-249E14 ... 40 2.6

>ref|XM_479525.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1283

 Score =  113 bits (57), Expect = 2e-22
 Identities = 99/113 (87%)
 Strand = Plus / Minus

                                                                       
Query: 93  ttgtaaattgtatctgagcagctttgcatcccggcccttcctgaaccaaggatgttccat 152
           ||||| ||| ||||||||||||||||||||  | |||||||| |||||||||| ||||||
Sbjct: 696 ttgtagattatatctgagcagctttgcatcgagacccttcctaaaccaaggattttccat 637

                                                                
Query: 153 gattttctcaatcgagatccttgtgctggggttaggatcaagaatccttagca 205
           |||||| || || ||||||||||| || |||||||||||||| ||||| ||||
Sbjct: 636 gattttgtccattgagatccttgtacttgggttaggatcaagtatcctgagca 584



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>ref|XM_479524.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2108

 Score =  113 bits (57), Expect = 2e-22
 Identities = 99/113 (87%)
 Strand = Plus / Minus

                                                                        
Query: 93   ttgtaaattgtatctgagcagctttgcatcccggcccttcctgaaccaaggatgttccat 152
            ||||| ||| ||||||||||||||||||||  | |||||||| |||||||||| ||||||
Sbjct: 1367 ttgtagattatatctgagcagctttgcatcgagacccttcctaaaccaaggattttccat 1308

                                                                 
Query: 153  gattttctcaatcgagatccttgtgctggggttaggatcaagaatccttagca 205
            |||||| || || ||||||||||| || |||||||||||||| ||||| ||||
Sbjct: 1307 gattttgtccattgagatccttgtacttgggttaggatcaagtatcctgagca 1255



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  113 bits (57), Expect = 2e-22
 Identities = 99/113 (87%)
 Strand = Plus / Plus

                                                                            
Query: 93       ttgtaaattgtatctgagcagctttgcatcccggcccttcctgaaccaaggatgttccat 152
                ||||| ||| ||||||||||||||||||||  | |||||||| |||||||||| ||||||
Sbjct: 28673980 ttgtagattatatctgagcagctttgcatcgagacccttcctaaaccaaggattttccat 28674039

                                                                     
Query: 153      gattttctcaatcgagatccttgtgctggggttaggatcaagaatccttagca 205
                |||||| || || ||||||||||| || |||||||||||||| ||||| ||||
Sbjct: 28674040 gattttgtccattgagatccttgtacttgggttaggatcaagtatcctgagca 28674092



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>dbj|AK072868.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141O10, full
            insert sequence
          Length = 2108

 Score =  113 bits (57), Expect = 2e-22
 Identities = 99/113 (87%)
 Strand = Plus / Minus

                                                                        
Query: 93   ttgtaaattgtatctgagcagctttgcatcccggcccttcctgaaccaaggatgttccat 152
            ||||| ||| ||||||||||||||||||||  | |||||||| |||||||||| ||||||
Sbjct: 1367 ttgtagattatatctgagcagctttgcatcgagacccttcctaaaccaaggattttccat 1308

                                                                 
Query: 153  gattttctcaatcgagatccttgtgctggggttaggatcaagaatccttagca 205
            |||||| || || ||||||||||| || |||||||||||||| ||||| ||||
Sbjct: 1307 gattttgtccattgagatccttgtacttgggttaggatcaagtatcctgagca 1255



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>dbj|AK059418.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-D08, full
           insert sequence
          Length = 1229

 Score =  113 bits (57), Expect = 2e-22
 Identities = 99/113 (87%)
 Strand = Plus / Minus

                                                                       
Query: 93  ttgtaaattgtatctgagcagctttgcatcccggcccttcctgaaccaaggatgttccat 152
           ||||| ||| ||||||||||||||||||||  | |||||||| |||||||||| ||||||
Sbjct: 647 ttgtagattatatctgagcagctttgcatcgagacccttcctaaaccaaggattttccat 588

                                                                
Query: 153 gattttctcaatcgagatccttgtgctggggttaggatcaagaatccttagca 205
           |||||| || || ||||||||||| || |||||||||||||| ||||| ||||
Sbjct: 587 gattttgtccattgagatccttgtacttgggttaggatcaagtatcctgagca 535



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>dbj|AK058819.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-G04, full
           insert sequence
          Length = 1283

 Score =  113 bits (57), Expect = 2e-22
 Identities = 99/113 (87%)
 Strand = Plus / Minus

                                                                       
Query: 93  ttgtaaattgtatctgagcagctttgcatcccggcccttcctgaaccaaggatgttccat 152
           ||||| ||| ||||||||||||||||||||  | |||||||| |||||||||| ||||||
Sbjct: 696 ttgtagattatatctgagcagctttgcatcgagacccttcctaaaccaaggattttccat 637

                                                                
Query: 153 gattttctcaatcgagatccttgtgctggggttaggatcaagaatccttagca 205
           |||||| || || ||||||||||| || |||||||||||||| ||||| ||||
Sbjct: 636 gattttgtccattgagatccttgtacttgggttaggatcaagtatcctgagca 584



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>dbj|AP003757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1409_C08
          Length = 90673

 Score =  113 bits (57), Expect = 2e-22
 Identities = 99/113 (87%)
 Strand = Plus / Plus

                                                                         
Query: 93    ttgtaaattgtatctgagcagctttgcatcccggcccttcctgaaccaaggatgttccat 152
             ||||| ||| ||||||||||||||||||||  | |||||||| |||||||||| ||||||
Sbjct: 49150 ttgtagattatatctgagcagctttgcatcgagacccttcctaaaccaaggattttccat 49209

                                                                  
Query: 153   gattttctcaatcgagatccttgtgctggggttaggatcaagaatccttagca 205
             |||||| || || ||||||||||| || |||||||||||||| ||||| ||||
Sbjct: 49210 gattttgtccattgagatccttgtacttgggttaggatcaagtatcctgagca 49262



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>gb|AY107513.1| Zea mays PCO092477 mRNA sequence
          Length = 1254

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                       
Query: 127 cccttcctgaaccaaggatgttccatgattttctcaatcgagatccttgtgctggggtta 186
           |||||||| ||||| ||||  ||||||||||| || |||||||||||| | || ||||||
Sbjct: 497 cccttcctaaaccatggattctccatgattttttccatcgagatccttctactagggtta 438

                          
Query: 187 ggatcaagaatcctt 201
           |||||||||||||||
Sbjct: 437 ggatcaagaatcctt 423



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>gb|BT023864.1| Drosophila melanogaster IP03633 full insert cDNA
          Length = 947

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 52  aaaattgcagtcatgtcaaa 71
           ||||||||||||||||||||
Sbjct: 765 aaaattgcagtcatgtcaaa 746



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>emb|AL359182.20| Human DNA sequence from clone RP11-217B7 on chromosome 9 Contains the
             5' end of the ABCA1 gene for ATP-binding cassette
             sub-family A (ABC1) member 1, two novel genes and two CpG
             islands, complete sequence
          Length = 96717

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     tcttggtccttgccttcaattgct 27
             |||||||||||||| |||||||||
Sbjct: 48126 tcttggtccttgccctcaattgct 48103



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>ref|NM_080363.5| Drosophila melanogaster Gustatory receptor 33a CG17213-RA (Gr33a),
            mRNA
          Length = 1428

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 52   aaaattgcagtcatgtcaaa 71
            ||||||||||||||||||||
Sbjct: 1403 aaaattgcagtcatgtcaaa 1384



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>gb|AF287262.1|AF287262 Homo sapiens ATP-binding cassette 1 sub-family A member 1 (ABCA1) and
            SNAP protein genes, complete cds
          Length = 201144

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 4    tcttggtccttgccttcaattgct 27
            |||||||||||||| |||||||||
Sbjct: 3190 tcttggtccttgccctcaattgct 3213



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>gb|AC011066.5|AC011066 Drosophila melanogaster, chromosome 2L, region 33B-33C, BAC clone
              BACR02B06, complete sequence
          Length = 174314

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     aaaattgcagtcatgtcaaa 71
              ||||||||||||||||||||
Sbjct: 131128 aaaattgcagtcatgtcaaa 131109



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>emb|BX511156.5| Zebrafish DNA sequence from clone DKEY-1M1 in linkage group 2, complete
             sequence
          Length = 158656

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 94    tgtaaattgtatctgagcagctttgcat 121
             |||| ||||||||| |||||||||||||
Sbjct: 56412 tgtagattgtatctaagcagctttgcat 56439



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>gb|AC007137.20|AC007137 Drosophila melanogaster, chromosome 2L, region 36E-, BAC clone BACR25C02,
              complete sequence
          Length = 171454

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     aaaattgcagtcatgtcaaa 71
              ||||||||||||||||||||
Sbjct: 116171 aaaattgcagtcatgtcaaa 116152



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>gb|AE003660.2| Drosophila melanogaster chromosome 2L, section 69 of 83 of the
            complete sequence
          Length = 232737

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 52   aaaattgcagtcatgtcaaa 71
            ||||||||||||||||||||
Sbjct: 2329 aaaattgcagtcatgtcaaa 2310



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>gb|AE003635.2| Drosophila melanogaster chromosome 2L, section 44 of 83 of the complete
             sequence
          Length = 308012

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    aaaattgcagtcatgtcaaa 71
             ||||||||||||||||||||
Sbjct: 50604 aaaattgcagtcatgtcaaa 50585



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>emb|BX322593.12| Zebrafish DNA sequence from clone CH211-249E14 in linkage group 2,
             complete sequence
          Length = 82337

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 94    tgtaaattgtatctgagcagctttgcat 121
             |||| ||||||||| |||||||||||||
Sbjct: 47713 tgtagattgtatctaagcagctttgcat 47740


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,206,327
Number of Sequences: 3902068
Number of extensions: 2206327
Number of successful extensions: 149437
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 149353
Number of HSP's gapped (non-prelim): 84
length of query: 209
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 187
effective length of database: 17,147,199,772
effective search space: 3206526357364
effective search space used: 3206526357364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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