ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart26g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NDST_CAEEL (Q966W3) Bifunctional heparan sulfate N-deacetylase/N... 28 6.9

>NDST_CAEEL (Q966W3) Bifunctional heparan sulfate|
           N-deacetylase/N-sulfotransferase 1 (EC 2.8.2.8)
           (Glucosaminyl N-deacetylase/N-sulfotransferase 1)
           [Includes: Heparan sulfate N-deacetylase 1 (EC 3.-.-.-);
           Heparan sulfate N-sulfotransferase 1 (EC 2.8.2.-)]
          Length = 852

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 15  FSFVENAQAIFLVPNNNVEITHL-LSSTASVFEWTKCFGSFKLNWQNIL 158
           F+ + N  +IF+    N     L L +  ++F + KC+ + KL WQ+ L
Sbjct: 492 FTILLNPISIFMTHQQNYAYDRLALYTFENLFRFIKCWTNIKLKWQDPL 540


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,289,589
Number of Sequences: 219361
Number of extensions: 318012
Number of successful extensions: 577
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 80,573,946
effective HSP length: 28
effective length of database: 74,431,838
effective search space used: 1786364112
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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