ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart26g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SF3_HELAN (P29675) Pollen-specific protein SF3 49 5e-06
2EPLIN_HUMAN (Q9UHB6) Epithelial protein lost in neoplasm 41 0.001
3EPLIN_MOUSE (Q9ERG0) Epithelial protein lost in neoplasm (mEPLIN) 41 0.001
4NORM_PSEPK (Q88CB9) Probable multidrug resistance protein norM (... 29 5.7
5EGF_MOUSE (P01132) Pro-epidermal growth factor precursor (EGF) [... 28 7.4
6VPS64_YEAST (Q03944) Vacuolar protein sorting protein 64 (Factor... 28 7.4

>SF3_HELAN (P29675) Pollen-specific protein SF3|
          Length = 219

 Score = 48.9 bits (115), Expect = 5e-06
 Identities = 21/30 (70%), Positives = 24/30 (80%)
 Frame = -2

Query: 434 PSNYAALEGILYCKHHFSQLFKEKGSYNHL 345
           PSNY A EG LYCKHH  QLFK+KG+Y+ L
Sbjct: 146 PSNYIAHEGRLYCKHHHIQLFKKKGNYSQL 175



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = -2

Query: 431 SNYAALEGILYCKHHFSQLFKEKGS 357
           SN+ + +G++YC+HHF QLFK  GS
Sbjct: 48  SNFNSFDGVVYCRHHFDQLFKRTGS 72



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>EPLIN_HUMAN (Q9UHB6) Epithelial protein lost in neoplasm|
          Length = 759

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = -2

Query: 425 YAALEGILYCKHHFSQLFKEKGSYN 351
           YA+L G +YCK HF+QLFK KG+Y+
Sbjct: 429 YASLHGRIYCKPHFNQLFKSKGNYD 453



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>EPLIN_MOUSE (Q9ERG0) Epithelial protein lost in neoplasm (mEPLIN)|
          Length = 753

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = -2

Query: 425 YAALEGILYCKHHFSQLFKEKGSYN 351
           YA+L G +YCK HF+QLFK KG+Y+
Sbjct: 427 YASLHGRIYCKPHFNQLFKSKGNYD 451



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>NORM_PSEPK (Q88CB9) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 462

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -3

Query: 265 NPPDYAAIFKVGFEAGSLEALLFIYDCNLLYAVFKLRGYQDLSISYL--LVC 116
           N P +AAIF+V  +   + A   ++D     A+  +RG +D   ++L  LVC
Sbjct: 348 NDPAFAAIFQVAVQLLMVAAWFELFDGMQTIAMGSIRGLKDAKTTFLIGLVC 399



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>EGF_MOUSE (P01132) Pro-epidermal growth factor precursor (EGF) [Contains:|
           Epidermal growth factor]
          Length = 1217

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 350 GCSSPSP*KAVRNGACSRGCLP-KPRNW 430
           GCSSP       NG CS+ CLP +P +W
Sbjct: 444 GCSSPD------NGGCSQICLPLRPGSW 465



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>VPS64_YEAST (Q03944) Vacuolar protein sorting protein 64 (Factor arrest protein|
           9)
          Length = 604

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 43  LMHSNFNSFFRNDINSMVQQHDPASTQGDTK 135
           L  SNFN    ND N+ V+Q+D    + DT+
Sbjct: 530 LTQSNFNGGINNDNNAKVKQNDSREEKKDTE 560


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,184,758
Number of Sequences: 219361
Number of extensions: 903038
Number of successful extensions: 2557
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2557
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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