Clone Name | rbart26g01 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | SF3_HELAN (P29675) Pollen-specific protein SF3 | 49 | 5e-06 | 2 | EPLIN_HUMAN (Q9UHB6) Epithelial protein lost in neoplasm | 41 | 0.001 | 3 | EPLIN_MOUSE (Q9ERG0) Epithelial protein lost in neoplasm (mEPLIN) | 41 | 0.001 | 4 | NORM_PSEPK (Q88CB9) Probable multidrug resistance protein norM (... | 29 | 5.7 | 5 | EGF_MOUSE (P01132) Pro-epidermal growth factor precursor (EGF) [... | 28 | 7.4 | 6 | VPS64_YEAST (Q03944) Vacuolar protein sorting protein 64 (Factor... | 28 | 7.4 |
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>SF3_HELAN (P29675) Pollen-specific protein SF3| Length = 219 Score = 48.9 bits (115), Expect = 5e-06 Identities = 21/30 (70%), Positives = 24/30 (80%) Frame = -2 Query: 434 PSNYAALEGILYCKHHFSQLFKEKGSYNHL 345 PSNY A EG LYCKHH QLFK+KG+Y+ L Sbjct: 146 PSNYIAHEGRLYCKHHHIQLFKKKGNYSQL 175 Score = 40.4 bits (93), Expect = 0.002 Identities = 14/25 (56%), Positives = 20/25 (80%) Frame = -2 Query: 431 SNYAALEGILYCKHHFSQLFKEKGS 357 SN+ + +G++YC+HHF QLFK GS Sbjct: 48 SNFNSFDGVVYCRHHFDQLFKRTGS 72
>EPLIN_HUMAN (Q9UHB6) Epithelial protein lost in neoplasm| Length = 759 Score = 41.2 bits (95), Expect = 0.001 Identities = 16/25 (64%), Positives = 21/25 (84%) Frame = -2 Query: 425 YAALEGILYCKHHFSQLFKEKGSYN 351 YA+L G +YCK HF+QLFK KG+Y+ Sbjct: 429 YASLHGRIYCKPHFNQLFKSKGNYD 453
>EPLIN_MOUSE (Q9ERG0) Epithelial protein lost in neoplasm (mEPLIN)| Length = 753 Score = 41.2 bits (95), Expect = 0.001 Identities = 16/25 (64%), Positives = 21/25 (84%) Frame = -2 Query: 425 YAALEGILYCKHHFSQLFKEKGSYN 351 YA+L G +YCK HF+QLFK KG+Y+ Sbjct: 427 YASLHGRIYCKPHFNQLFKSKGNYD 451
>NORM_PSEPK (Q88CB9) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 462 Score = 28.9 bits (63), Expect = 5.7 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = -3 Query: 265 NPPDYAAIFKVGFEAGSLEALLFIYDCNLLYAVFKLRGYQDLSISYL--LVC 116 N P +AAIF+V + + A ++D A+ +RG +D ++L LVC Sbjct: 348 NDPAFAAIFQVAVQLLMVAAWFELFDGMQTIAMGSIRGLKDAKTTFLIGLVC 399
>EGF_MOUSE (P01132) Pro-epidermal growth factor precursor (EGF) [Contains:| Epidermal growth factor] Length = 1217 Score = 28.5 bits (62), Expect = 7.4 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Frame = +2 Query: 350 GCSSPSP*KAVRNGACSRGCLP-KPRNW 430 GCSSP NG CS+ CLP +P +W Sbjct: 444 GCSSPD------NGGCSQICLPLRPGSW 465
>VPS64_YEAST (Q03944) Vacuolar protein sorting protein 64 (Factor arrest protein| 9) Length = 604 Score = 28.5 bits (62), Expect = 7.4 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 43 LMHSNFNSFFRNDINSMVQQHDPASTQGDTK 135 L SNFN ND N+ V+Q+D + DT+ Sbjct: 530 LTQSNFNGGINNDNNAKVKQNDSREEKKDTE 560 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,184,758 Number of Sequences: 219361 Number of extensions: 903038 Number of successful extensions: 2557 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2510 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2557 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)