ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart26f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y4597_ARATH (P0C042) Hypothetical protein At4g15970 32 0.79
2NO16_SOYBN (P23233) Nodulin 16 precursor (N-16) 29 5.1
3RAS_GEOCY (P24498) Ras-like protein 28 8.7
4INSL3_PIG (P51461) Insulin-like 3 precursor (Leydig insulin-like... 28 8.7

>Y4597_ARATH (P0C042) Hypothetical protein At4g15970|
          Length = 367

 Score = 32.0 bits (71), Expect = 0.79
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 458 CCVGPGAKLHDXRNVXDVWRNY-TAAPVTDKRAGKFQWKVPGICI 327
           CCVG   K+ D R V   W NY +AA  TD +     W+ P  C+
Sbjct: 268 CCVGLENKIKDLRQVIVDWENYVSAAKTTDGQI--MTWRDPENCM 310



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>NO16_SOYBN (P23233) Nodulin 16 precursor (N-16)|
          Length = 109

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 6   AYCFNHPSLINYRPWRFGQDQDTCMCCTHTGVLPLCVYLC 125
           +YC  H  L+ YR W  G  +  C CC  T    +C+Y C
Sbjct: 58  SYCPVHLPLMEYRKW-IGNCR--CGCCQWTTEPEVCLYCC 94



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>RAS_GEOCY (P24498) Ras-like protein|
          Length = 209

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 83  LHAHWSTTALCIFVYIHIX*LTNHLAELIPQ 175
           + AHWST  +C+F Y +I  + + +A    Q
Sbjct: 91  MDAHWSTVFVCLFNYFNITSMYDEIASFREQ 121



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>INSL3_PIG (P51461) Insulin-like 3 precursor (Leydig insulin-like peptide)|
           (Ley-I-L) (Relaxin-like factor) [Contains: Insulin-like
           3 B chain; Insulin-like 3 A chain]
          Length = 131

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 266 GNQMHGTMHATHPTNSCCISGC 331
           G+  H    AT+P   CC+SGC
Sbjct: 99  GHHHHRRAAATNPARHCCLSGC 120


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,685,272
Number of Sequences: 219361
Number of extensions: 1129825
Number of successful extensions: 2389
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2388
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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