Clone Name | rbart26f07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_632758.1| Dictyostelium discoideum hypothetical protein (DDB0186922), partial mRNA Length = 4422 Score = 40.1 bits (20), Expect = 0.89 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 cagaccatgctgtggttgataatt 35 |||||||||| ||||||||||||| Sbjct: 2275 cagaccatgcagtggttgataatt 2252
>gb|AY544779.1| Leccinum talamancae 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 653 Score = 40.1 bits (20), Expect = 0.89 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 gtggttgataattaaatgac 42 |||||||||||||||||||| Sbjct: 388 gtggttgataattaaatgac 369
>gb|AY210802.1| Danio rerio nuclear receptor coactivator (tif2) gene, complete cds Length = 90209 Score = 40.1 bits (20), Expect = 0.89 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 acatactaataaccatactaacaa 84 |||||||||||| ||||||||||| Sbjct: 70070 acatactaataaacatactaacaa 70047
>emb|BX950199.14| Zebrafish DNA sequence from clone CH211-215A11 in linkage group 24, complete sequence Length = 213091 Score = 40.1 bits (20), Expect = 0.89 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 acatactaataaccatactaacaa 84 |||||||||||| ||||||||||| Sbjct: 56989 acatactaataaacatactaacaa 56966
>gb|AC129093.34| Mus musculus strain C57BL/6J clone rp23-198m10 map 19, complete sequence Length = 190697 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 atactaataaccatactaa 81 ||||||||||||||||||| Sbjct: 69062 atactaataaccatactaa 69080
>gb|AC164292.4| Mus musculus BAC clone RP24-177C20 from chromosome 3, complete sequence Length = 185822 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 acactcatcaccagataca 63 ||||||||||||||||||| Sbjct: 172453 acactcatcaccagataca 172471
>gb|AC103380.13| Mus musculus chromosome 1, clone RP24-263A16, complete sequence Length = 173136 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 atactaataaccatactaa 81 ||||||||||||||||||| Sbjct: 2758 atactaataaccatactaa 2776
>gb|AF454588.1| Leccinum carpini from Netherlands 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 916 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 tggttgataattaaatgac 42 ||||||||||||||||||| Sbjct: 354 tggttgataattaaatgac 336
>gb|AC121899.3| Mus musculus BAC clone RP24-166J12 from chromosome 6, complete sequence Length = 129975 Score = 38.2 bits (19), Expect = 3.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 8 tatacagaccatgctgtggttga 30 |||||||||| |||||||||||| Sbjct: 5735 tatacagaccttgctgtggttga 5757
>gb|AC124523.5| Mus musculus BAC clone RP23-399P19 from chromosome 6, complete sequence Length = 188084 Score = 38.2 bits (19), Expect = 3.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 8 tatacagaccatgctgtggttga 30 |||||||||| |||||||||||| Sbjct: 86694 tatacagaccttgctgtggttga 86716
>gb|AC161761.3| Mus musculus BAC clone RP23-379E17 from chromosome 3, complete sequence Length = 205852 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 acactcatcaccagataca 63 ||||||||||||||||||| Sbjct: 27024 acactcatcaccagataca 27042
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 56 cagatacatactaataacc 74 ||||||||||||||||||| Sbjct: 21636060 cagatacatactaataacc 21636078
>gb|AC010478.5|AC010478 Homo sapiens chromosome 5 clone CTD-2314G24, complete sequence Length = 126852 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 catgctgtggttgataatt 35 ||||||||||||||||||| Sbjct: 85595 catgctgtggttgataatt 85577
>dbj|AP003960.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1612_A04 Length = 124833 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 56 cagatacatactaataacc 74 ||||||||||||||||||| Sbjct: 66516 cagatacatactaataacc 66534
>gb|AY656926.1| Uncultured mycorrhizal fungus BOLETE2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 782 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 tggttgataattaaatgac 42 ||||||||||||||||||| Sbjct: 430 tggttgataattaaatgac 412
>gb|AC138106.9| Mus musculus chromosome 1, clone RP23-278C19, complete sequence Length = 173026 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 atactaataaccatactaa 81 ||||||||||||||||||| Sbjct: 90087 atactaataaccatactaa 90105 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 688,690 Number of Sequences: 3902068 Number of extensions: 688690 Number of successful extensions: 46549 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46517 Number of HSP's gapped (non-prelim): 32 length of query: 84 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 63 effective length of database: 17,151,101,840 effective search space: 1080519415920 effective search space used: 1080519415920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)