ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart26f03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197602.1| Oryza sativa (japonica cultivar-group) putative glutathione S-transferase (OSJNBb0015I11.25), mRNA Length = 1206 Score = 109 bits (55), Expect = 8e-21 Identities = 163/199 (81%) Strand = Plus / Minus Query: 257 atcagaatggcgcctcggcggacgacgggcgctgcaggctcttgacgtacacccaggacc 316 ||||||| || ||||||||||| | |||||| | ||||||||||| | | ||| ||| Sbjct: 925 atcagaagggagcctcggcggagggcgggcggttgaggctcttgacctgcttccacgact 866 Query: 317 cgcggctcgagacggcagtccaccagcggctgacgttcctgcgggactggatgaggcggg 376 |||||| |||||| | | |||||| ||||||||||| | ||||||||| | | ||| Sbjct: 865 cgcggccggagacgtcggcccaccaccggctgacgttgcggcgggactgcagcatccgga 806 Query: 377 cagtgcgctcgtcggaggcgaggcggtcggcgttgggcatgtgggagaggtcggcgaggg 436 |||||| ||||| ||||||||||||||||||||| | ||| || ||||||||||||| Sbjct: 805 gcgtgcgcgggtcggcggcgaggcggtcggcgttggggaggtgcgaaaggtcggcgaggg 746 Query: 437 tgaacttgtcgccggcgag 455 ||||||||||||||||||| Sbjct: 745 tgaacttgtcgccggcgag 727
>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete sequence Length = 138824 Score = 109 bits (55), Expect = 8e-21 Identities = 163/199 (81%) Strand = Plus / Plus Query: 257 atcagaatggcgcctcggcggacgacgggcgctgcaggctcttgacgtacacccaggacc 316 ||||||| || ||||||||||| | |||||| | ||||||||||| | | ||| ||| Sbjct: 114156 atcagaagggagcctcggcggagggcgggcggttgaggctcttgacctgcttccacgact 114215 Query: 317 cgcggctcgagacggcagtccaccagcggctgacgttcctgcgggactggatgaggcggg 376 |||||| |||||| | | |||||| ||||||||||| | ||||||||| | | ||| Sbjct: 114216 cgcggccggagacgtcggcccaccaccggctgacgttgcggcgggactgcagcatccgga 114275 Query: 377 cagtgcgctcgtcggaggcgaggcggtcggcgttgggcatgtgggagaggtcggcgaggg 436 |||||| ||||| ||||||||||||||||||||| | ||| || ||||||||||||| Sbjct: 114276 gcgtgcgcgggtcggcggcgaggcggtcggcgttggggaggtgcgaaaggtcggcgaggg 114335 Query: 437 tgaacttgtcgccggcgag 455 ||||||||||||||||||| Sbjct: 114336 tgaacttgtcgccggcgag 114354
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 109 bits (55), Expect = 8e-21 Identities = 163/199 (81%) Strand = Plus / Plus Query: 257 atcagaatggcgcctcggcggacgacgggcgctgcaggctcttgacgtacacccaggacc 316 ||||||| || ||||||||||| | |||||| | ||||||||||| | | ||| ||| Sbjct: 20712704 atcagaagggagcctcggcggagggcgggcggttgaggctcttgacctgcttccacgact 20712763 Query: 317 cgcggctcgagacggcagtccaccagcggctgacgttcctgcgggactggatgaggcggg 376 |||||| |||||| | | |||||| ||||||||||| | ||||||||| | | ||| Sbjct: 20712764 cgcggccggagacgtcggcccaccaccggctgacgttgcggcgggactgcagcatccgga 20712823 Query: 377 cagtgcgctcgtcggaggcgaggcggtcggcgttgggcatgtgggagaggtcggcgaggg 436 |||||| ||||| ||||||||||||||||||||| | ||| || ||||||||||||| Sbjct: 20712824 gcgtgcgcgggtcggcggcgaggcggtcggcgttggggaggtgcgaaaggtcggcgaggg 20712883 Query: 437 tgaacttgtcgccggcgag 455 ||||||||||||||||||| Sbjct: 20712884 tgaacttgtcgccggcgag 20712902
>dbj|AB103350.1| Oryza sativa (japonica cultivar-group) GST mRNA for glutathione S-transferase, complete cd Length = 1238 Score = 109 bits (55), Expect = 8e-21 Identities = 163/199 (81%) Strand = Plus / Minus Query: 257 atcagaatggcgcctcggcggacgacgggcgctgcaggctcttgacgtacacccaggacc 316 ||||||| || ||||||||||| | |||||| | ||||||||||| | | ||| ||| Sbjct: 925 atcagaagggagcctcggcggagggcgggcggttgaggctcttgacctgcttccacgact 866 Query: 317 cgcggctcgagacggcagtccaccagcggctgacgttcctgcgggactggatgaggcggg 376 |||||| |||||| | | |||||| ||||||||||| | ||||||||| | | ||| Sbjct: 865 cgcggccggagacgtcggcccaccaccggctgacgttgcggcgggactgcagcatccgga 806 Query: 377 cagtgcgctcgtcggaggcgaggcggtcggcgttgggcatgtgggagaggtcggcgaggg 436 |||||| ||||| ||||||||||||||||||||| | ||| || ||||||||||||| Sbjct: 805 gcgtgcgcgggtcggcggcgaggcggtcggcgttggggaggtgcgaaaggtcggcgaggg 746 Query: 437 tgaacttgtcgccggcgag 455 ||||||||||||||||||| Sbjct: 745 tgaacttgtcgccggcgag 727
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 109 bits (55), Expect = 8e-21 Identities = 163/199 (81%) Strand = Plus / Plus Query: 257 atcagaatggcgcctcggcggacgacgggcgctgcaggctcttgacgtacacccaggacc 316 ||||||| || ||||||||||| | |||||| | ||||||||||| | | ||| ||| Sbjct: 20723976 atcagaagggagcctcggcggagggcgggcggttgaggctcttgacctgcttccacgact 20724035 Query: 317 cgcggctcgagacggcagtccaccagcggctgacgttcctgcgggactggatgaggcggg 376 |||||| |||||| | | |||||| ||||||||||| | ||||||||| | | ||| Sbjct: 20724036 cgcggccggagacgtcggcccaccaccggctgacgttgcggcgggactgcagcatccgga 20724095 Query: 377 cagtgcgctcgtcggaggcgaggcggtcggcgttgggcatgtgggagaggtcggcgaggg 436 |||||| ||||| ||||||||||||||||||||| | ||| || ||||||||||||| Sbjct: 20724096 gcgtgcgcgggtcggcggcgaggcggtcggcgttggggaggtgcgaaaggtcggcgaggg 20724155 Query: 437 tgaacttgtcgccggcgag 455 ||||||||||||||||||| Sbjct: 20724156 tgaacttgtcgccggcgag 20724174
>ref|XM_470189.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 960 Score = 99.6 bits (50), Expect = 8e-18 Identities = 62/66 (93%) Strand = Plus / Minus Query: 387 gtcggaggcgaggcggtcggcgttgggcatgtgggagaggtcggcgagggtgaacttgtc 446 ||||||||||||||||||||||||||| | |||||| |||||||||| |||||||||||| Sbjct: 711 gtcggaggcgaggcggtcggcgttggggaggtgggacaggtcggcgatggtgaacttgtc 652 Query: 447 gccggc 452 |||||| Sbjct: 651 gccggc 646 Score = 73.8 bits (37), Expect = 4e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 272 cggcggacgacgggcgctgcaggctcttgacgtacacccaggacccgcggctcgaga 328 ||||||||| ||||||||||||||||||||||||| |||| ||| ||||||| |||| Sbjct: 826 cggcggacggcgggcgctgcaggctcttgacgtactcccacgactcgcggctggaga 770
>gb|AY533122.1| Oryza sativa (japonica cultivar-group) glutathione S-transferase GSTF14 mRNA, partial cds Length = 825 Score = 99.6 bits (50), Expect = 8e-18 Identities = 62/66 (93%) Strand = Plus / Minus Query: 387 gtcggaggcgaggcggtcggcgttgggcatgtgggagaggtcggcgagggtgaacttgtc 446 ||||||||||||||||||||||||||| | |||||| |||||||||| |||||||||||| Sbjct: 711 gtcggaggcgaggcggtcggcgttggggaggtgggacaggtcggcgatggtgaacttgtc 652 Query: 447 gccggc 452 |||||| Sbjct: 651 gccggc 646 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 273 ggcggacgacgggcgctgcaggctcttgacgtacacccaggacccgcggctcgaga 328 |||||||| ||||||||||||||||||||||||| |||| ||| ||||||| |||| Sbjct: 825 ggcggacggcgggcgctgcaggctcttgacgtactcccacgactcgcggctggaga 770
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 99.6 bits (50), Expect = 8e-18 Identities = 62/66 (93%) Strand = Plus / Plus Query: 387 gtcggaggcgaggcggtcggcgttgggcatgtgggagaggtcggcgagggtgaacttgtc 446 ||||||||||||||||||||||||||| | |||||| |||||||||| |||||||||||| Sbjct: 1919186 gtcggaggcgaggcggtcggcgttggggaggtgggacaggtcggcgatggtgaacttgtc 1919245 Query: 447 gccggc 452 |||||| Sbjct: 1919246 gccggc 1919251 Score = 73.8 bits (37), Expect = 4e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 272 cggcggacgacgggcgctgcaggctcttgacgtacacccaggacccgcggctcgaga 328 ||||||||| ||||||||||||||||||||||||| |||| ||| ||||||| |||| Sbjct: 1919071 cggcggacggcgggcgctgcaggctcttgacgtactcccacgactcgcggctggaga 1919127 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 417 gtgggagaggtcggcgagggtgaacttgtcgccggcgag 455 |||||| |||||||| |||||||||| |||||||||||| Sbjct: 1929164 gtgggacaggtcggccagggtgaactcgtcgccggcgag 1929202
>gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1006F06, complete sequence Length = 122218 Score = 99.6 bits (50), Expect = 8e-18 Identities = 62/66 (93%) Strand = Plus / Minus Query: 387 gtcggaggcgaggcggtcggcgttgggcatgtgggagaggtcggcgagggtgaacttgtc 446 ||||||||||||||||||||||||||| | |||||| |||||||||| |||||||||||| Sbjct: 56225 gtcggaggcgaggcggtcggcgttggggaggtgggacaggtcggcgatggtgaacttgtc 56166 Query: 447 gccggc 452 |||||| Sbjct: 56165 gccggc 56160 Score = 73.8 bits (37), Expect = 4e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 272 cggcggacgacgggcgctgcaggctcttgacgtacacccaggacccgcggctcgaga 328 ||||||||| ||||||||||||||||||||||||| |||| ||| ||||||| |||| Sbjct: 56340 cggcggacggcgggcgctgcaggctcttgacgtactcccacgactcgcggctggaga 56284 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 417 gtgggagaggtcggcgagggtgaacttgtcgccggcgag 455 |||||| |||||||| |||||||||| |||||||||||| Sbjct: 46247 gtgggacaggtcggccagggtgaactcgtcgccggcgag 46209
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 99.6 bits (50), Expect = 8e-18 Identities = 62/66 (93%) Strand = Plus / Plus Query: 387 gtcggaggcgaggcggtcggcgttgggcatgtgggagaggtcggcgagggtgaacttgtc 446 ||||||||||||||||||||||||||| | |||||| |||||||||| |||||||||||| Sbjct: 1919184 gtcggaggcgaggcggtcggcgttggggaggtgggacaggtcggcgatggtgaacttgtc 1919243 Query: 447 gccggc 452 |||||| Sbjct: 1919244 gccggc 1919249 Score = 73.8 bits (37), Expect = 4e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 272 cggcggacgacgggcgctgcaggctcttgacgtacacccaggacccgcggctcgaga 328 ||||||||| ||||||||||||||||||||||||| |||| ||| ||||||| |||| Sbjct: 1919069 cggcggacggcgggcgctgcaggctcttgacgtactcccacgactcgcggctggaga 1919125 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 417 gtgggagaggtcggcgagggtgaacttgtcgccggcgag 455 |||||| |||||||| |||||||||| |||||||||||| Sbjct: 1929162 gtgggacaggtcggccagggtgaactcgtcgccggcgag 1929200
>dbj|AK102889.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112M16, full insert sequence Length = 1300 Score = 99.6 bits (50), Expect = 8e-18 Identities = 62/66 (93%) Strand = Plus / Minus Query: 387 gtcggaggcgaggcggtcggcgttgggcatgtgggagaggtcggcgagggtgaacttgtc 446 ||||||||||||||||||||||||||| | |||||| |||||||||| |||||||||||| Sbjct: 803 gtcggaggcgaggcggtcggcgttggggaggtgggacaggtcggcgatggtgaacttgtc 744 Query: 447 gccggc 452 |||||| Sbjct: 743 gccggc 738 Score = 73.8 bits (37), Expect = 4e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 272 cggcggacgacgggcgctgcaggctcttgacgtacacccaggacccgcggctcgaga 328 ||||||||| ||||||||||||||||||||||||| |||| ||| ||||||| |||| Sbjct: 918 cggcggacggcgggcgctgcaggctcttgacgtactcccacgactcgcggctggaga 862
>gb|AF244679.1|AF244679 Zea mays glutathione S-transferase GST 14 mRNA, complete cds Length = 1007 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 345 gctgacgttcctgcgggactggatgaggcgggcagtgcgctcgtcggaggcgaggcggtc 404 ||||||||||||||| |||| |||||||| || | ||| |||| |||||||||||| Sbjct: 732 gctgacgttcctgcgcgactccatgaggcgtgcggaccgcgggtcgccggcgaggcggtc 673 Query: 405 ggcgttgggcatgtgggagaggtcggcgagggtgaacttg 444 ||||||||||| |||||| ||||||||||| ||||||||| Sbjct: 672 ggcgttgggcaggtgggacaggtcggcgagcgtgaacttg 633 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Minus Query: 257 atcagaatggcgcctcggcggacgacgggcgctgca 292 ||||||| |||||||| ||||||| ||||||||||| Sbjct: 820 atcagaagggcgcctccgcggacggcgggcgctgca 785
>gb|AF244676.1|AF244676 Zea mays glutathione S-transferase GST 11 mRNA, complete cds Length = 1279 Score = 73.8 bits (37), Expect = 4e-10 Identities = 142/177 (80%) Strand = Plus / Minus Query: 276 ggacgacgggcgctgcaggctcttgacgtacacccaggacccgcggctcgagacggcagt 335 ||||| ||||||||||||| ||||||||||| ||||| |||||| |||||| | Sbjct: 836 ggacggcgggcgctgcagggtcttgacgtacttccaggtgtcgcggccggagacgtcgtg 777 Query: 336 ccaccagcggctgacgttcctgcgggactggatgaggcgggcagtgcgctcgtcggaggc 395 |||||| | |||||||||| ||||||||| || | |||| | |||| ||||||| | Sbjct: 776 ccaccacctgctgacgttcttgcgggactcgaacatgcggcgggagcgcgggtcggagac 717 Query: 396 gaggcggtcggcgttgggcatgtgggagaggtcggcgagggtgaacttgtcgccggc 452 |||| |||| |||| ||||| ||| || |||||||||| |||||| ||||||||||| Sbjct: 716 gaggtggtccgcgtagggcaggtgcgacaggtcggcgatggtgaagttgtcgccggc 660
>gb|AY103672.1| Zea mays PCO064413 mRNA sequence Length = 1195 Score = 73.8 bits (37), Expect = 4e-10 Identities = 142/177 (80%) Strand = Plus / Minus Query: 276 ggacgacgggcgctgcaggctcttgacgtacacccaggacccgcggctcgagacggcagt 335 ||||| ||||||||||||| ||||||||||| ||||| |||||| |||||| | Sbjct: 841 ggacggcgggcgctgcagggtcttgacgtacttccaggtgtcgcggccggagacgtcgtg 782 Query: 336 ccaccagcggctgacgttcctgcgggactggatgaggcgggcagtgcgctcgtcggaggc 395 |||||| | |||||||||| ||||||||| || | |||| | |||| ||||||| | Sbjct: 781 ccaccacctgctgacgttcttgcgggactcgaacatgcggcgggagcgcgggtcggagac 722 Query: 396 gaggcggtcggcgttgggcatgtgggagaggtcggcgagggtgaacttgtcgccggc 452 |||| |||| |||| ||||| ||| || |||||||||| |||||| ||||||||||| Sbjct: 721 gaggtggtccgcgtagggcaggtgcgacaggtcggcgatggtgaagttgtcgccggc 665
>gb|AF244678.1|AF244678 Zea mays glutathione S-transferase GST 13 mRNA, complete cds Length = 1134 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 408 gttgggcatgtgggagaggtcggcgagggtgaacttgtcgccggcgag 455 |||||||| ||||||||||||||| |||||||| | |||||||||||| Sbjct: 588 gttgggcaggtgggagaggtcggccagggtgaagtcgtcgccggcgag 541
>ref|XM_470191.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 678 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 417 gtgggagaggtcggcgagggtgaacttgtcgccggcgag 455 |||||| |||||||| |||||||||| |||||||||||| Sbjct: 516 gtgggacaggtcggccagggtgaactcgtcgccggcgag 478
>gb|AY533123.1| Oryza sativa (japonica cultivar-group) glutathione S-transferase GSTF15 mRNA, complete cds Length = 678 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 417 gtgggagaggtcggcgagggtgaacttgtcgccggcgag 455 |||||| |||||||| |||||||||| |||||||||||| Sbjct: 516 gtgggacaggtcggccagggtgaactcgtcgccggcgag 478
>dbj|AK059955.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-D02, full insert sequence Length = 951 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 417 gtgggagaggtcggcgagggtgaacttgtcgccggcgag 455 |||||| |||||||| |||||||||| |||||||||||| Sbjct: 624 gtgggacaggtcggccagggtgaactcgtcgccggcgag 586
>gb|AY111699.1| Zea mays CL1117_-2 mRNA sequence Length = 633 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 417 gtgggagaggtcggcgagggtgaacttgtcgcc 449 ||||||||||||||| |||||||||| |||||| Sbjct: 281 gtgggagaggtcggccagggtgaactcgtcgcc 249
>gb|AF244677.1|AF244677 Zea mays glutathione S-transferase GST 12 mRNA, complete cds Length = 1198 Score = 48.1 bits (24), Expect = 0.025 Identities = 39/44 (88%) Strand = Plus / Minus Query: 412 ggcatgtgggagaggtcggcgagggtgaacttgtcgccggcgag 455 |||| ||||||||||||||| || ||||| | |||||||||||| Sbjct: 627 ggcaggtgggagaggtcggccagtgtgaagtcgtcgccggcgag 584
>gb|AY103863.1| Zea mays PCO132785 mRNA sequence Length = 959 Score = 48.1 bits (24), Expect = 0.025 Identities = 39/44 (88%) Strand = Plus / Minus Query: 412 ggcatgtgggagaggtcggcgagggtgaacttgtcgccggcgag 455 |||| ||||||||||||||| || ||||| | |||||||||||| Sbjct: 650 ggcaggtgggagaggtcggccagtgtgaagtcgtcgccggcgag 607
>gb|BT009210.1| Triticum aestivum clone wle1n.pk0047.h6:fis, full insert mRNA sequence Length = 966 Score = 46.1 bits (23), Expect = 0.099 Identities = 29/31 (93%) Strand = Plus / Minus Query: 424 aggtcggcgagggtgaacttgtcgccggcga 454 |||||||| |||||||||| ||||||||||| Sbjct: 614 aggtcggcaagggtgaactcgtcgccggcga 584
>ref|NM_015313.1| Homo sapiens Rho guanine nucleotide exchange factor (GEF) 12 (ARHGEF12), mRNA Length = 9501 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 18 aagcattttattacgcttatta 39 |||||||||||||||||||||| Sbjct: 9260 aagcattttattacgcttatta 9239
>gb|AF180681.1|AF180681 Homo sapiens guanine nucleotide exchange factor (LARG) mRNA, complete cds Length = 9501 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 18 aagcattttattacgcttatta 39 |||||||||||||||||||||| Sbjct: 9260 aagcattttattacgcttatta 9239
>dbj|AP000758.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-775A2, complete sequence Length = 163025 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 18 aagcattttattacgcttatta 39 |||||||||||||||||||||| Sbjct: 92264 aagcattttattacgcttatta 92243
>ref|XM_715814.1| Candida albicans SC5314 translation initiation factor subunit eIF3 (CaO19_13937), mRNA Length = 2220 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 atatggtgttgatggagctgt 221 ||||||||||||||||||||| Sbjct: 381 atatggtgttgatggagctgt 401
>ref|XM_716327.1| Candida albicans SC5314 hypothetical protein (PRT1) partial mRNA Length = 2220 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 atatggtgttgatggagctgt 221 ||||||||||||||||||||| Sbjct: 381 atatggtgttgatggagctgt 401
>ref|XM_883675.1| Candida albicans SC5314 hypothetical protein (CaJ7.0160) partial mRNA Length = 2220 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 atatggtgttgatggagctgt 221 ||||||||||||||||||||| Sbjct: 381 atatggtgttgatggagctgt 401
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 89 gaaacacccatgccgatgaag 109 ||||||||||||||||||||| Sbjct: 2581489 gaaacacccatgccgatgaag 2581509
>gb|AC064846.5| Homo sapiens BAC clone RP11-59C11 from 2, complete sequence Length = 169988 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 292 aggctcttgacgtacacccag 312 ||||||||||||||||||||| Sbjct: 145115 aggctcttgacgtacacccag 145095
>emb|CR749743.13| Zebrafish DNA sequence from clone DKEY-97M3 in linkage group 4, complete sequence Length = 177044 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 22 attttattacgcttattatta 42 ||||||||||||||||||||| Sbjct: 18154 attttattacgcttattatta 18134
>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence Length = 949626 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 201 atatggtgttgatggagctgt 221 ||||||||||||||||||||| Sbjct: 304993 atatggtgttgatggagctgt 304973
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 cgacggcgatcgcgcatgga 255 |||||||||||||||||||| Sbjct: 1210101 cgacggcgatcgcgcatgga 1210120
>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16 Length = 346274 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 aggcgaggcggtcggcgttg 411 |||||||||||||||||||| Sbjct: 56234 aggcgaggcggtcggcgttg 56253
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 aggcgaggcggtcggcgttg 411 |||||||||||||||||||| Sbjct: 320125 aggcgaggcggtcggcgttg 320144
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12 Length = 349672 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 aggcgaggcggtcggcgttg 411 |||||||||||||||||||| Sbjct: 163084 aggcgaggcggtcggcgttg 163065
>emb|AL606612.3|OSJN00043 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0021I10, complete sequence Length = 105538 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 225 cagcaccttctcgacggcgatcgcgcat 252 ||||||||||||||| |||||| ||||| Sbjct: 68932 cagcaccttctcgacagcgatcacgcat 68905
>gb|AC116529.16| Mus musculus chromosome 8, clone RP24-380O18, complete sequence Length = 166863 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 atggagctgtgggcagcacc 231 |||||||||||||||||||| Sbjct: 49000 atggagctgtgggcagcacc 49019
>dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, complete sequence Length = 1857073 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 tgccacggatatggtgttgatgga 216 |||| ||||||||||||||||||| Sbjct: 324165 tgccgcggatatggtgttgatgga 324188
>gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sandra5, complete sequence; splicing factor SF2-like protein (SF2) and universal stress protein (USP1) genes and Hv receptor-kinase-like pseudogene, complete cds; and retrotransposons Sandra6 and Sandra7, complete sequence Length = 82293 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 388 tcggaggcgaggcggtcggcgttg 411 |||||||||||| ||||||||||| Sbjct: 52772 tcggaggcgaggtggtcggcgttg 52795
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 225 cagcaccttctcgacggcgatcgcgcat 252 ||||||||||||||| |||||| ||||| Sbjct: 756792 cagcaccttctcgacagcgatcacgcat 756765
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 380 tgcgctcgtcggaggcgaggcggtcggc 407 |||||||||||| |||||||||| |||| Sbjct: 2286655 tgcgctcgtcggtggcgaggcgggcggc 2286682
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 tgcgctcgtcggaggcgagg 399 |||||||||||||||||||| Sbjct: 1961481 tgcgctcgtcggaggcgagg 1961462
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 14 gggaaagcattttattacgcttattatt 41 ||||||||||| ||||| |||||||||| Sbjct: 1632768 gggaaagcattctattaagcttattatt 1632741
>gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete sequence Length = 1844853 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 tgccacggatatggtgttgatgga 216 |||| ||||||||||||||||||| Sbjct: 1598730 tgccgcggatatggtgttgatgga 1598753
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 89 gaaacacccatgccgatgaagaagaacg 116 ||||||||||| ||||||| |||||||| Sbjct: 459119 gaaacacccatcccgatgaggaagaacg 459092
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 380 tgcgctcgtcggaggcgaggcggtcggc 407 |||||||||||| |||||||||| |||| Sbjct: 2286599 tgcgctcgtcggtggcgaggcgggcggc 2286626
>emb|AL954364.5|CNS08CCZ Oryza sativa chromosome 12, . BAC OSJNBa0023M16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 156258 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 380 tgcgctcgtcggaggcgaggcggtcggc 407 |||||||||||| |||||||||| |||| Sbjct: 11846 tgcgctcgtcggtggcgaggcgggcggc 11873 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,114,937 Number of Sequences: 3902068 Number of extensions: 3114937 Number of successful extensions: 57995 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57521 Number of HSP's gapped (non-prelim): 473 length of query: 455 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 433 effective length of database: 17,147,199,772 effective search space: 7424737501276 effective search space used: 7424737501276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
