ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart26f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZFYV9_HUMAN (O95405) Zinc finger FYVE domain-containing protein ... 32 0.93
2SPS_SOLTU (Q43845) Sucrose-phosphate synthase (EC 2.4.1.14) (UDP... 30 4.6
3FRI4_SOYBN (Q948P5) Ferritin-4, chloroplast precursor (EC 1.16.3... 30 6.0
4CENPC_HUMAN (Q03188) Centromere protein C 1 (CENP-C) (Centromere... 29 7.9

>ZFYV9_HUMAN (O95405) Zinc finger FYVE domain-containing protein 9 (Mothers|
           against decapentaplegic homolog-interacting protein)
           (Madh-interacting protein) (Smad anchor for receptor
           activation) (Receptor activation anchor) (hSARA) (Novel
           serine protease)
          Length = 1425

 Score = 32.3 bits (72), Expect = 0.93
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = +2

Query: 92  TNERLLSTHHVATSSGMT-----ALRKTNETQVN*EYKNWPLISQPKATQGEQRKWLSSC 256
           T E L  T H + S  MT      L + N++QVN E + +  ISQP+ T G+        
Sbjct: 383 TTEFLNMTEHFSESQDMTNWKLTKLNEMNDSQVNEEKEKFLQISQPEDTNGDSGGQCVGL 442

Query: 257 LQMKHREKSSCIAXS 301
                  K +CI+ S
Sbjct: 443 ADAGLDLKGTCISES 457



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>SPS_SOLTU (Q43845) Sucrose-phosphate synthase (EC 2.4.1.14)|
           (UDP-glucose-fructose-phosphate glucosyltransferase)
          Length = 1053

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 185 YKNWPLISQPKATQGEQRKWLSSCLQMKHREKSSCIAXS*QNRSE 319
           ++ W L  Q K  +GEQ +W++   Q + R +   +A   ++ SE
Sbjct: 80  WRIWNLARQKKQLEGEQAQWMAKRRQERERGRREAVADMSEDLSE 124



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>FRI4_SOYBN (Q948P5) Ferritin-4, chloroplast precursor (EC 1.16.3.1) (SFerH-4)|
          Length = 247

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +2

Query: 65  EV*LSLLITTNERLLSTHHVATSSGMTALRKTNETQ 172
           E+ LSL   TNE+LL+ H VAT +G   L    ET+
Sbjct: 169 ELALSLEKLTNEKLLNLHSVATKNGDVQLADFVETE 204



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>CENPC_HUMAN (Q03188) Centromere protein C 1 (CENP-C) (Centromere autoantigen C)|
          Length = 943

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +2

Query: 107 LSTHHVATSSGMTALRKTNETQVN*EYKNWPLISQPKATQGEQR 238
           L  HH   +S   + +KTN++  N   K  PL  Q  AT+G QR
Sbjct: 550 LPMHH---NSSRKSTKKTNQSSKNIRKKTIPLKRQKTATKGNQR 590


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,774,172
Number of Sequences: 219361
Number of extensions: 1128855
Number of successful extensions: 2210
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2210
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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