>M3K14_MOUSE (Q9WUL6) Mitogen-activated protein kinase kinase kinase 14 (EC|
           2.7.11.25) (NF-kappa beta-inducing kinase)
           (Serine/threonine-protein kinase NIK)
          Length = 942

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +1

Query: 181 AIHAMANMRSPWTGDGMDGRPPRQPRATRHHTRTEPMEKTKPA 309
           A+  +  ++SPW G+  + RPP Q +AT H T   P  +  PA
Sbjct: 656 ALQEVGGLKSPWKGEYKEPRPPPQDQATCHQTLPTPPRENPPA 698

>YM47_YEAST (Q03233) Hypothetical 22.1 kDa protein in SSO2-HSC82 intergenic|
           region
          Length = 198

 Score = 32.3 bits (72), Expect = 0.63
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 277 RTEPMEKTKPANCGGGRTTVQFLDLTSNTHSACPAPP 387
           R++  ++TK   C  GR   + LDL  NT +A   PP
Sbjct: 37  RSKSKQRTKSKRCVSGRLATEVLDLYGNTKTATTPPP 73

>RFIP1_HUMAN (Q6WKZ4) Rab11 family-interacting protein 1 (Rab11-FIP1)|
            (Rab-coupling protein)
          Length = 1283

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 17/55 (30%), Positives = 21/55 (38%)
 Frame = +1

Query: 220  GDGMDGRPPRQPRATRHHTRTEPMEKTKPANCGGGRTTVQFLDLTSNTHSACPAP 384
            G+  DG PP  P A    +  E +    PA CG   +    L L S   S    P
Sbjct: 846  GNASDGEPPESPHA--EDSERESVTTPGPATCGAPASPADHLLLPSQEESFSEVP 898

>HEM1_THET2 (Q72IJ0) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)|
          Length = 390

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +2

Query: 179 LPYMPWLI*GLLGQETEWTAGHRGNRGPRDITRALNQWRR 298
           +P +  LI   LG   EW AGHR     R+  RAL  W R
Sbjct: 300 IPKVEALIEKALGDYMEWYAGHR----VREAIRALEAWAR 335

>MURG_MYCTU (O06224) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 410

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 19/44 (43%), Positives = 21/44 (47%)
 Frame = +3

Query: 207 VSLDRRRNGRPATAATEGHETSHAH*TNGEDEACELRRRAHHGP 338
           VSL+R  +G  A  A  G    HAH   G     ELRRRA   P
Sbjct: 242 VSLNRAVSGAAADLAAAGVCVLHAH---GPQNVLELRRRAQGDP 282

>MURG_MYCBO (Q7VEP8) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 410

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 19/44 (43%), Positives = 21/44 (47%)
 Frame = +3

Query: 207 VSLDRRRNGRPATAATEGHETSHAH*TNGEDEACELRRRAHHGP 338
           VSL+R  +G  A  A  G    HAH   G     ELRRRA   P
Sbjct: 242 VSLNRAVSGAAADLAAAGVCVLHAH---GPQNVLELRRRAQGDP 282

>EID1_ARATH (Q8LEA8) Phytochrome A-associated F-box protein (Empfindlicher im|
           dunkelroten Licht protein 1)
          Length = 336

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +1

Query: 253 PRATRHHTRTEPMEKTKPANCGGGRTTVQFLDLTSNTHS-ACPAPPPSDSI 402
           P+ T         E +KP   G G  T  F  L  + ++   PAPPP DSI
Sbjct: 128 PKPTTTDLALNDEEVSKPV--GSGLETTSFWSLYDDLYTDTIPAPPPEDSI 176

>HXA5_CHICK (Q6B3N0) Homeobox protein Hox-A5|
          Length = 270

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +1

Query: 196 ANMRSPWTGDGMDGRPPRQPRATRHHTRTEPMEKTKPANCGGGRTTVQFLDLTSNTHSAC 375
           A+M S   G G +G      R+   H       +T PAN     T  ++    + +HS  
Sbjct: 38  ASMHSGRYGYGYNGMDLSVGRSASTHFGASERARTYPANSTSASTEPRYSQSAAASHSPP 97

Query: 376 PAPPPSDSI 402
           P P P  ++
Sbjct: 98  PDPLPCTAV 106


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,709,348
Number of Sequences: 219361
Number of extensions: 1126437
Number of successful extensions: 3474
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3473
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)