Clone Name | rbart26e05 |
---|---|
Clone Library Name | barley_pub |
>gb|AF174004.1|AF174004 Triticum aestivum alternative oxidase mRNA, partial cds; nuclear gene for mitochondrial product Length = 1100 Score = 478 bits (241), Expect = e-132 Identities = 359/392 (91%), Gaps = 16/392 (4%) Strand = Plus / Minus Query: 86 tggcgtaagccaaataggttcatctttga--gcgaaatggtggttcaacaatatcctag- 142 ||||||| |||||||||||||||||| || |||||| |||||||||||||||||||| Sbjct: 1069 tggcgtacgccaaataggttcatcttagatagcgaaacggtggttcaacaatatcctaat 1010 Query: 143 atacgtaactgacaagcacactgcttatttctcagtactcgatagttaccaaaggagcaa 202 ||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct: 1009 atacgcaactgacaagcacactgattatttctcagtactgaatagttaccaaaggagcaa 950 Query: 203 caattgcgacatcctatacagctaaaga--gccctcatttcctcggaagccttc-aaaac 259 ||||||| |||||||||||||||||||| || ||||||||||| | ||||| ||||| Sbjct: 949 caattgcaacatcctatacagctaaagatagctctcatttcctctg---ccttccaaaac 893 Query: 260 gaaacactcatttgcttggtagtagtag------cgatgcaaaattcagcagaagacggc 313 |||||||||||||||||||| ||||||| |||||||||| ||||||||| ||||| Sbjct: 892 gaaacactcatttgcttggtggtagtagtagcagcgatgcaaaactcagcagaacacggc 833 Query: 314 caagcctcagtggtatccgatcggcgccggggtggccttcagctccataccctggtagta 373 || |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct: 832 ca-gcctcagtggtatccgatcggcgctggggtggccttcagctgcataccctggtagta 774 Query: 374 cacgtccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggt 433 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 773 cacgtccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggt 714 Query: 434 gaccacgtccttgagggtggcgttggccggga 465 ||||||||||||||||||||||||||| |||| Sbjct: 713 gaccacgtccttgagggtggcgttggcaggga 682
>dbj|AB078882.1| Triticum aestivum mRNA for alternative oxidase, complete cds Length = 1119 Score = 319 bits (161), Expect = 5e-84 Identities = 206/221 (93%), Gaps = 10/221 (4%) Strand = Plus / Minus Query: 254 caaaacgaaacactcatttgcttggt---------agtagtagcgatgcaaaattcagca 304 |||||||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 1096 caaaacgaaacactcatttgcttggtggtagtagcagtagtagcgttgcaaaattcagca 1037 Query: 305 gaagacggccaagcctcagtggtatccgatcggcgccggggtggccttcagctccatacc 364 ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1036 gaacacggcca-gcctcagtggtatccgatcggcgccggggtggccttcagctgcatacc 978 Query: 365 ctggtagtacacgtccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcg 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 977 ctggtagtacacgtccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcg 918 Query: 425 caccacggtgaccacgtccttgagggtggcgttggccggga 465 ||||||||||||||||||||||||||||||||||| |||| Sbjct: 917 gaccacggtgaccacgtccttgagggtggcgttggcaggga 877
>dbj|AK064040.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-C12, full insert sequence Length = 1471 Score = 174 bits (88), Expect = 2e-40 Identities = 133/148 (89%) Strand = Plus / Minus Query: 318 cctcagtggtatccgatcggcgccggggtggccttcagctccataccctggtagtacacg 377 |||||||| |||||||||||||| ||||| |||||||||||| |||||||| | | | Sbjct: 1104 cctcagtgatatccgatcggcgcaggggtctgcttcagctccatgccctggtaatggatg 1045 Query: 378 tccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacc 437 |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1044 tccgatgcgaagtgattgacgtcgcggtggtgagcctcgtcggcgcgcacgacggtgacg 985 Query: 438 acgtccttgagggtggcgttggccggga 465 ||||||||||| ||||||||||| |||| Sbjct: 984 acgtccttgagcgtggcgttggcgggga 957 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 213 atcctatacagctaaagagccctcattt 240 |||| ||||||||||||||| ||||||| Sbjct: 1207 atccgatacagctaaagagctctcattt 1180
>dbj|AB007452.1| Oryza sativa mRNA for alternative oxidase, complete cds Length = 1256 Score = 174 bits (88), Expect = 2e-40 Identities = 133/148 (89%) Strand = Plus / Minus Query: 318 cctcagtggtatccgatcggcgccggggtggccttcagctccataccctggtagtacacg 377 |||||||| |||||||||||||| ||||| |||||||||||| |||||||| | | | Sbjct: 1085 cctcagtgatatccgatcggcgcaggggtctgcttcagctccatgccctggtaatggatg 1026 Query: 378 tccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacc 437 |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1025 tccgatgcgaagtgattgacgtcgcggtggtgagcctcgtcggcgcgcacgacggtgacg 966 Query: 438 acgtccttgagggtggcgttggccggga 465 ||||||||||| ||||||||||| |||| Sbjct: 965 acgtccttgagcgtggcgttggcgggga 938 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 213 atcctatacagctaaagagccctcattt 240 |||| ||||||||||||||| ||||||| Sbjct: 1188 atccgatacagctaaagagctctcattt 1161
>dbj|AB004864.1| Oryza sativa (japonica cultivar-group) AOX1a mRNA for alternative oxidase, complete cds Length = 1459 Score = 174 bits (88), Expect = 2e-40 Identities = 133/148 (89%) Strand = Plus / Minus Query: 318 cctcagtggtatccgatcggcgccggggtggccttcagctccataccctggtagtacacg 377 |||||||| |||||||||||||| ||||| |||||||||||| |||||||| | | | Sbjct: 1092 cctcagtgatatccgatcggcgcaggggtctgcttcagctccatgccctggtaatggatg 1033 Query: 378 tccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacc 437 |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1032 tccgatgcgaagtgattgacgtcgcggtggtgagcctcgtcggcgcgcacgacggtgacg 973 Query: 438 acgtccttgagggtggcgttggccggga 465 ||||||||||| ||||||||||| |||| Sbjct: 972 acgtccttgagcgtggcgttggcgggga 945 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 213 atcctatacagctaaagagccctcattt 240 |||| ||||||||||||||| ||||||| Sbjct: 1195 atccgatacagctaaagagctctcattt 1168
>ref|XM_473757.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 999 Score = 170 bits (86), Expect = 3e-39 Identities = 131/146 (89%) Strand = Plus / Minus Query: 320 tcagtggtatccgatcggcgccggggtggccttcagctccataccctggtagtacacgtc 379 |||||| |||||||||||||| ||||| |||||||||||| |||||||| | | ||| Sbjct: 999 tcagtgatatccgatcggcgcaggggtctgcttcagctccatgccctggtaatggatgtc 940 Query: 380 cgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgaccac 439 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || Sbjct: 939 cgatgcgaagtgattgacgtcgcggtggtgagcctcgtcggcgcgcacgacggtgacgac 880 Query: 440 gtccttgagggtggcgttggccggga 465 ||||||||| ||||||||||| |||| Sbjct: 879 gtccttgagcgtggcgttggcgggga 854
>gb|AY644465.1| Saccharum officinarum mitochondrial alternative oxidase 1 mRNA, complete cds; nuclear gene for mitochondrial product Length = 1316 Score = 155 bits (78), Expect = 2e-34 Identities = 126/142 (88%) Strand = Plus / Minus Query: 316 agcctcagtggtatccgatcggcgccggggtggccttcagctccataccctggtagtaca 375 ||||||||||||||||||||||||| |||| |||||||| ||| |||||| | | | Sbjct: 1096 agcctcagtggtatccgatcggcgcaggggactgcttcagctgcatgccctggcaatgga 1037 Query: 376 cgtccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtga 435 ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1036 tgtccgatgcaaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcacgacggtga 977 Query: 436 ccacgtccttgagggtggcgtt 457 | ||||||||||| |||||||| Sbjct: 976 cgacgtccttgagcgtggcgtt 955
>gb|AY059647.1| Zea mays alternative oxidase AOX2 precursor (Aox2) mRNA, nuclear gene encoding mitochondrial protein, complete cds~~ Length = 1456 Score = 143 bits (72), Expect = 6e-31 Identities = 123/140 (87%) Strand = Plus / Minus Query: 318 cctcagtggtatccgatcggcgccggggtggccttcagctccataccctggtagtacacg 377 ||||||||||||||||||||||| |||| |||||||| ||| |||||| | | | | Sbjct: 1099 cctcagtggtatccgatcggcgcaggggactgcttcagctgcattccctggcaatggatg 1040 Query: 378 tccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacc 437 |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1039 tccgatgcaaagtggttgacgtcgcggtggtgagcctcgtcggcgcggacgacggtgact 980 Query: 438 acgtccttgagggtggcgtt 457 ||||||||||| |||||||| Sbjct: 979 acgtccttgagcgtggcgtt 960
>gb|AY108791.1| Zea mays PCO108471 mRNA sequence Length = 1415 Score = 143 bits (72), Expect = 6e-31 Identities = 123/140 (87%) Strand = Plus / Minus Query: 318 cctcagtggtatccgatcggcgccggggtggccttcagctccataccctggtagtacacg 377 ||||||||||||||||||||||| |||| |||||||| ||| |||||| | | | | Sbjct: 1113 cctcagtggtatccgatcggcgcaggggactgcttcagctgcattccctggcaatggatg 1054 Query: 378 tccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacc 437 |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1053 tccgatgcaaagtggttgacgtcgcggtggtgagcctcgtcggcgcggacgacggtgact 994 Query: 438 acgtccttgagggtggcgtt 457 ||||||||||| |||||||| Sbjct: 993 acgtccttgagcgtggcgtt 974
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 133 bits (67), Expect = 6e-28 Identities = 82/87 (94%) Strand = Plus / Plus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 30321728 ccgatgcgaagtgattgacgtcgcggtggtgagcctcgtcggcgcgcacgacggtgacga 30321787 Query: 439 cgtccttgagggtggcgttggccggga 465 |||||||||| ||||||||||| |||| Sbjct: 30321788 cgtccttgagcgtggcgttggcgggga 30321814 Score = 93.7 bits (47), Expect = 5e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 |||||||||| ||||||| |||||||||||| |||||||||||||| | |||||||| | Sbjct: 30325836 ccgatgcgaaatggttgaggtcgcggtggtgcgcctcgtcggcgcggatgacggtgacga 30325895 Query: 439 cgtccttgagggtggcgttggccggga 465 |||||||||| ||||||| ||| |||| Sbjct: 30325896 cgtccttgagcgtggcgtcggcgggga 30325922 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 |||||||||| |||||||||||||||||||| ||||||||||| || || || ||| | Sbjct: 27704187 ccgatgcgaaatggttgacgtcgcggtggtgcgcctcgtcggcacgaacaacaacgacga 27704128 Query: 439 cgtccttgagggtggcg 455 |||||||||| |||||| Sbjct: 27704127 cgtccttgagcgtggcg 27704111 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 318 cctcagtggtatccgatcggcgccggggtggccttcagctccataccctggta 370 |||||||| |||||||||||||| ||||| |||||||||||| |||||||| Sbjct: 30321565 cctcagtgatatccgatcggcgcaggggtctgcttcagctccatgccctggta 30321617 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 213 atcctatacagctaaagagccctcattt 240 |||| ||||||||||||||| ||||||| Sbjct: 30321462 atccgatacagctaaagagctctcattt 30321489
>dbj|AB004813.1| Oryza sativa (japonica cultivar-group) AOX1b and AOX1a genes, complete cds Length = 7421 Score = 133 bits (67), Expect = 6e-28 Identities = 82/87 (94%) Strand = Plus / Minus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 6561 ccgatgcgaagtgattgacgtcgcggtggtgagcctcgtcggcgcgcacgacggtgacga 6502 Query: 439 cgtccttgagggtggcgttggccggga 465 |||||||||| ||||||||||| |||| Sbjct: 6501 cgtccttgagcgtggcgttggcgggga 6475 Score = 93.7 bits (47), Expect = 5e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 |||||||||| ||||||| |||||||||||| |||||||||||||| | |||||||| | Sbjct: 2453 ccgatgcgaaatggttgaggtcgcggtggtgcgcctcgtcggcgcggatgacggtgacga 2394 Query: 439 cgtccttgagggtggcgttggccggga 465 |||||||||| ||||||| ||| |||| Sbjct: 2393 cgtccttgagcgtggcgtcggcgggga 2367 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 318 cctcagtggtatccgatcggcgccggggtggccttcagctccataccctggta 370 |||||||| |||||||||||||| ||||| |||||||||||| |||||||| Sbjct: 6724 cctcagtgatatccgatcggcgcaggggtctgcttcagctccatgccctggta 6672 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 213 atcctatacagctaaagagccctcattt 240 |||| ||||||||||||||| ||||||| Sbjct: 6827 atccgatacagctaaagagctctcattt 6800
>emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083N12, complete sequence Length = 160989 Score = 133 bits (67), Expect = 6e-28 Identities = 82/87 (94%) Strand = Plus / Plus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 71624 ccgatgcgaagtgattgacgtcgcggtggtgagcctcgtcggcgcgcacgacggtgacga 71683 Query: 439 cgtccttgagggtggcgttggccggga 465 |||||||||| ||||||||||| |||| Sbjct: 71684 cgtccttgagcgtggcgttggcgggga 71710 Score = 93.7 bits (47), Expect = 5e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 |||||||||| ||||||| |||||||||||| |||||||||||||| | |||||||| | Sbjct: 75732 ccgatgcgaaatggttgaggtcgcggtggtgcgcctcgtcggcgcggatgacggtgacga 75791 Query: 439 cgtccttgagggtggcgttggccggga 465 |||||||||| ||||||| ||| |||| Sbjct: 75792 cgtccttgagcgtggcgtcggcgggga 75818 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 318 cctcagtggtatccgatcggcgccggggtggccttcagctccataccctggta 370 |||||||| |||||||||||||| ||||| |||||||||||| |||||||| Sbjct: 71461 cctcagtgatatccgatcggcgcaggggtctgcttcagctccatgccctggta 71513 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 213 atcctatacagctaaagagccctcattt 240 |||| ||||||||||||||| ||||||| Sbjct: 71358 atccgatacagctaaagagctctcattt 71385
>dbj|AB189673.1| Dracunculus vulgaris DvAOX mRNA for alternative oxidase, complete cds Length = 1372 Score = 131 bits (66), Expect = 2e-27 Identities = 111/126 (88%) Strand = Plus / Minus Query: 317 gcctcagtggtatccgatcggcgccggggtggccttcagctccataccctggtagtacac 376 |||||||||||| |||| ||||||||| || | ||||||||| | ||||||||||| || Sbjct: 1153 gcctcagtggtacccgagcggcgccggcgtcgtcttcagctcaagaccctggtagtggac 1094 Query: 377 gtccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgac 436 ||| || |||||||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct: 1093 gtcggaggcgaagtggttgacgtcgcggtggtgtgcctcgtcggcgcggacgacggtgac 1034 Query: 437 cacgtc 442 ||||| Sbjct: 1033 gacgtc 1028
>gb|AY644466.1| Saccharum officinarum mitochondrial alternative oxidase 1b mRNA, complete cds; nuclear gene for mitochondrial product Length = 989 Score = 119 bits (60), Expect = 8e-24 Identities = 123/144 (85%) Strand = Plus / Minus Query: 322 agtggtatccgatcggcgccggggtggccttcagctccataccctggtagtacacgtccg 381 ||||||| |||| ||||| || ||| ||||||||| ||| |||||||| | | ||||| Sbjct: 875 agtggtacccgagaggcgcaggcgtgtccttcagcttcatcccctggtaatgaatgtccg 816 Query: 382 atgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgaccacgt 441 |||||||||||||||| ||||||||||| ||||||||||||||||| | |||||| |||| Sbjct: 815 atgcgaagtggttgacatcgcggtggtgcgcctcgtcggcgcgcacgatggtgacgacgt 756 Query: 442 ccttgagggtggcgttggccggga 465 ||||||| |||||| ||| |||| Sbjct: 755 ccttgagcttggcgtcggcgggga 732
>gb|AY485264.1| Zea mays alternative oxidase 1a (Aox1a) gene, complete cds Length = 3361 Score = 117 bits (59), Expect = 3e-23 Identities = 74/79 (93%) Strand = Plus / Minus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 ||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| | Sbjct: 2887 ccgatgcaaagtggttgacgtcgcggtggtgagcctcgtcggcgcggacgacggtgacta 2828 Query: 439 cgtccttgagggtggcgtt 457 |||||||||| |||||||| Sbjct: 2827 cgtccttgagcgtggcgtt 2809 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Minus Query: 318 cctcagtggtatccgatcggcgccgggg 345 ||||||||||||||||||||||| |||| Sbjct: 3050 cctcagtggtatccgatcggcgcagggg 3023
>gb|AY644468.1| Saccharum officinarum mitochondrial alternative oxidase 1d mRNA, complete cds; nuclear gene for mitochondrial product Length = 1108 Score = 113 bits (57), Expect = 5e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 377 gtccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgac 436 |||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct: 823 gtccgacgcgaagtggttgacgtcgcggtggtgcgcctcgtcggcgcgcacgacggtgac 764 Query: 437 cacgtccttgagggtggcgttggccggga 465 ||||||||||| |||||| ||| |||| Sbjct: 763 aacgtccttgagcttggcgtcggcgggga 735
>gb|AY059648.1| Zea mays alternative oxidase AOX3 precursor (Aox3) mRNA, nuclear gene encoding mitochondrial protein, complete cds~~ Length = 1397 Score = 113 bits (57), Expect = 5e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 377 gtccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgac 436 |||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct: 1101 gtccgacgcgaagtggttgacgtcgcggtggtgcgcctcgtcggcgcgcacgacggtgac 1042 Query: 437 cacgtccttgagggtggcgttggccggga 465 ||||||||||| |||||| ||| |||| Sbjct: 1041 gacgtccttgagcttggcgtcggcgggga 1013
>gb|M60330.1|SURAOX1A S.guttatum aox1 mRNA encoding an alternative oxidase protein Length = 1404 Score = 101 bits (51), Expect = 2e-18 Identities = 105/123 (85%) Strand = Plus / Minus Query: 320 tcagtggtatccgatcggcgccggggtggccttcagctccataccctggtagtacacgtc 379 ||||||||| |||| ||||||||| || | ||||||||| | | ||||||| | ||||| Sbjct: 1123 tcagtggtacccgagcggcgccggcgtcgtcttcagctcaagatcctggtaatggacgtc 1064 Query: 380 cgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgaccac 439 || |||||||||||||||||||||||||| |||||||| ||||| || |||||||| || Sbjct: 1063 ggaggcgaagtggttgacgtcgcggtggtgtgcctcgtctgcgcggacgacggtgacgac 1004 Query: 440 gtc 442 ||| Sbjct: 1003 gtc 1001
>dbj|AB078883.1| Triticum aestivum mRNA for alternative oxidase, complete cds Length = 1136 Score = 99.6 bits (50), Expect = 8e-18 Identities = 74/82 (90%) Strand = Plus / Minus Query: 384 gcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgaccacgtcc 443 |||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||| Sbjct: 1048 gcgaagtggttgacatcgcggtggtgcgcctcgtcggcgcgcacgacggtgacgacgtcc 989 Query: 444 ttgagggtggcgttggccggga 465 ||||| |||||| ||| |||| Sbjct: 988 ttgagcctggcgtcggcgggga 967
>ref|XM_473758.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1008 Score = 97.6 bits (49), Expect = 3e-17 Identities = 79/89 (88%) Strand = Plus / Minus Query: 377 gtccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgac 436 |||||||||||| ||||||| |||||||||||| |||||||||||||| | |||||||| Sbjct: 951 gtccgatgcgaaatggttgaggtcgcggtggtgcgcctcgtcggcgcggatgacggtgac 892 Query: 437 cacgtccttgagggtggcgttggccggga 465 ||||||||||| ||||||| ||| |||| Sbjct: 891 gacgtccttgagcgtggcgtcggcgggga 863
>dbj|AK107376.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-B09, full insert sequence Length = 1360 Score = 97.6 bits (49), Expect = 3e-17 Identities = 79/89 (88%) Strand = Plus / Minus Query: 377 gtccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgac 436 |||||||||||| ||||||| |||||||||||| |||||||||||||| | |||||||| Sbjct: 1098 gtccgatgcgaaatggttgaggtcgcggtggtgcgcctcgtcggcgcggatgacggtgac 1039 Query: 437 cacgtccttgagggtggcgttggccggga 465 ||||||||||| ||||||| ||| |||| Sbjct: 1038 gacgtccttgagcgtggcgtcggcgggga 1010
>dbj|AB004865.1| Oryza sativa (japonica cultivar-group) AOX1b mRNA for alternative oxidase, complete cds Length = 1343 Score = 97.6 bits (49), Expect = 3e-17 Identities = 79/89 (88%) Strand = Plus / Minus Query: 377 gtccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgac 436 |||||||||||| ||||||| |||||||||||| |||||||||||||| | |||||||| Sbjct: 1083 gtccgatgcgaaatggttgaggtcgcggtggtgcgcctcgtcggcgcggatgacggtgac 1024 Query: 437 cacgtccttgagggtggcgttggccggga 465 ||||||||||| ||||||| ||| |||| Sbjct: 1023 gacgtccttgagcgtggcgtcggcgggga 995
>ref|XM_467319.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1038 Score = 91.7 bits (46), Expect = 2e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 378 tccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacc 437 ||||| |||||||||||||||||||||||||| |||||||||||||| || ||| ||| Sbjct: 980 tccgacgcgaagtggttgacgtcgcggtggtgtgcctcgtcggcgcggacgacgacgacg 921 Query: 438 acgtccttgagggtggcg 455 ||||||||||| |||||| Sbjct: 920 acgtccttgagcgtggcg 903
>dbj|AB074005.1| Oryza sativa (japonica cultivar-group) mitochondrial AOX1c mRNA for alternative oxidase 1c, complete cds Length = 1088 Score = 91.7 bits (46), Expect = 2e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 378 tccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacc 437 ||||| |||||||||||||||||||||||||| |||||||||||||| || ||| ||| Sbjct: 1013 tccgacgcgaagtggttgacgtcgcggtggtgtgcctcgtcggcgcggacgacgacgacg 954 Query: 438 acgtccttgagggtggcg 455 ||||||||||| |||||| Sbjct: 953 acgtccttgagcgtggcg 936
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 89.7 bits (45), Expect = 8e-15 Identities = 69/77 (89%) Strand = Plus / Plus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 |||| |||||||||||||||||||||||||| |||||||||||||| || ||| ||| | Sbjct: 28831344 ccgacgcgaagtggttgacgtcgcggtggtgtgcctcgtcggcgcggacgacgacgacga 28831403 Query: 439 cgtccttgagggtggcg 455 |||||||||| |||||| Sbjct: 28831404 cgtccttgagcgtggcg 28831420 Score = 83.8 bits (42), Expect = 5e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 388 agtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgaccacgtccttga 447 |||||||||||||||||||||| |||||||||||||| || || |||| |||||| ||| Sbjct: 12646581 agtggttgacgtcgcggtggtgggcctcgtcggcgcggacgaccatgacgacgtccctga 12646522 Query: 448 gggtggcgttggccggga 465 ||||||||| ||| |||| Sbjct: 12646521 gggtggcgtcggcgggga 12646504
>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0459B01 Length = 163087 Score = 89.7 bits (45), Expect = 8e-15 Identities = 69/77 (89%) Strand = Plus / Plus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 |||| |||||||||||||||||||||||||| |||||||||||||| || ||| ||| | Sbjct: 147917 ccgacgcgaagtggttgacgtcgcggtggtgtgcctcgtcggcgcggacgacgacgacga 147976 Query: 439 cgtccttgagggtggcg 455 |||||||||| |||||| Sbjct: 147977 cgtccttgagcgtggcg 147993
>dbj|AP003994.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1111_E07 Length = 123613 Score = 89.7 bits (45), Expect = 8e-15 Identities = 69/77 (89%) Strand = Plus / Plus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 |||| |||||||||||||||||||||||||| |||||||||||||| || ||| ||| | Sbjct: 24036 ccgacgcgaagtggttgacgtcgcggtggtgtgcctcgtcggcgcggacgacgacgacga 24095 Query: 439 cgtccttgagggtggcg 455 |||||||||| |||||| Sbjct: 24096 cgtccttgagcgtggcg 24112
>dbj|AB074004.1| Oryza sativa (japonica cultivar-group) mitochondrial AOX1c gene for alternative oxidase 1c, complete cds Length = 2674 Score = 89.7 bits (45), Expect = 8e-15 Identities = 69/77 (89%) Strand = Plus / Minus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 |||| |||||||||||||||||||||||||| |||||||||||||| || ||| ||| | Sbjct: 1753 ccgacgcgaagtggttgacgtcgcggtggtgtgcctcgtcggcgcggacgacgacgacga 1694 Query: 439 cgtccttgagggtggcg 455 |||||||||| |||||| Sbjct: 1693 cgtccttgagcgtggcg 1677
>emb|Z15117.1|SGAOX1G S.guttatum aox1 gene for salicylic acid-inducible alternative oxidase Length = 3584 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Minus Query: 384 gcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgaccacgtc 442 |||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||| Sbjct: 2806 gcgaagtggttgacgtcgcggtggtgtgcctcgtcggcgcggacgacggtgacgacgtc 2748
>dbj|AP004024.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1134_B09 Length = 105247 Score = 83.8 bits (42), Expect = 5e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 388 agtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgaccacgtccttga 447 |||||||||||||||||||||| |||||||||||||| || || |||| |||||| ||| Sbjct: 43640 agtggttgacgtcgcggtggtgggcctcgtcggcgcggacgaccatgacgacgtccctga 43581 Query: 448 gggtggcgttggccggga 465 ||||||||| ||| |||| Sbjct: 43580 gggtggcgtcggcgggga 43563
>ref|NM_194839.1| Oryza sativa (japonica cultivar-group) putative alternative oxidase (OSJNBa0030B02.13), mRNA Length = 732 Score = 81.8 bits (41), Expect = 2e-12 Identities = 92/109 (84%) Strand = Plus / Minus Query: 357 tccataccctggtagtacacgtccgatgcgaagtggttgacgtcgcggtggtgagcctcg 416 ||||| |||||| | | ||| ||||||||||| |||||||||||||||||||| ||||| Sbjct: 695 tccatcccctggaaatgcacatccgatgcgaaatggttgacgtcgcggtggtgcgcctca 636 Query: 417 tcggcgcgcaccacggtgaccacgtccttgagggtggcgttggccggga 465 ||||||| || ||| ||| ||||||||||| ||||||| ||| |||| Sbjct: 635 tcggcgcagacaacgacgacgacgtccttgagcgtggcgtcggcaggga 587
>gb|AY644467.1| Saccharum officinarum mitochondrial alternative oxidase 1c mRNA, complete cds; nuclear gene for mitochondrial product Length = 1189 Score = 81.8 bits (41), Expect = 2e-12 Identities = 104/125 (83%) Strand = Plus / Minus Query: 324 tggtatccgatcggcgccggggtggccttcagctccataccctggtagtacacgtccgat 383 |||||||| | |||||| || || |||| |||| |||||||||| | | | |||||| Sbjct: 951 tggtatccaagcggcgcaggtgtctccttgagctgcataccctggaaatgaatgtccgac 892 Query: 384 gcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgaccacgtcc 443 || ||||| ||||||||||||||||| |||||||||| |||||||||| | ||||| ||| Sbjct: 891 gcaaagtgattgacgtcgcggtggtgcgcctcgtcggagcgcaccacgataaccacatcc 832 Query: 444 ttgag 448 ||||| Sbjct: 831 ttgag 827
>gb|AC135423.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0015C02, complete sequence Length = 147407 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 |||||||||| |||||||||||||||||||| ||||||| |||||| || ||| ||| | Sbjct: 5229 ccgatgcgaaatggttgacgtcgcggtggtgcgcctcgttggcgcggacgacgacgacga 5170 Query: 439 cgtccttgagggtggcg 455 |||||||||| |||||| Sbjct: 5169 cgtccttgagcgtggcg 5153
>gb|AC121364.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052E20, complete sequence Length = 162434 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 |||||||||| |||||||||||||||||||| ||||||| |||||| || ||| ||| | Sbjct: 46762 ccgatgcgaaatggttgacgtcgcggtggtgcgcctcgttggcgcggacgacgacgacga 46703 Query: 439 cgtccttgagggtggcg 455 |||||||||| |||||| Sbjct: 46702 cgtccttgagcgtggcg 46686
>dbj|AB097428.1| Oryza sativa (japonica cultivar-group) transposon AnacA1(AOX) DNA, complete sequence Length = 2105 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 |||||||||| |||||||||||||||||||| ||||||| |||||| || ||| ||| | Sbjct: 1129 ccgatgcgaaatggttgacgtcgcggtggtgcgcctcgttggcgcggacgacgacgacga 1070 Query: 439 cgtccttgagggtggcg 455 |||||||||| |||||| Sbjct: 1069 cgtccttgagcgtggcg 1053
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 |||||||||| |||||||||||||||||||| ||||||| |||||| || ||| ||| | Sbjct: 22942749 ccgatgcgaaatggttgacgtcgcggtggtgcgcctcgttggcgcggacgacgacgacga 22942690 Query: 439 cgtccttgagggtggcg 455 |||||||||| |||||| Sbjct: 22942689 cgtccttgagcgtggcg 22942673 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Plus Query: 398 gtcgcggtggtgagcctcgtcggcgcgcaccacggtgaccacgtcct 444 ||||| |||||| |||||||||||||| | |||||||| ||||||| Sbjct: 18430137 gtcgcagtggtgcgcctcgtcggcgcggatgacggtgacgacgtcct 18430183
>dbj|AB097430.1| Oryza sativa (japonica cultivar-group) transposon AnacA3(AOX) DNA, complete sequence Length = 3051 Score = 77.8 bits (39), Expect = 3e-11 Identities = 75/87 (86%) Strand = Plus / Minus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 |||||||||| |||||||||||||||||||| ||||| ||||||| || ||| ||| | Sbjct: 2068 ccgatgcgaaatggttgacgtcgcggtggtgcgcctcatcggcgcagacaacgacgacga 2009 Query: 439 cgtccttgagggtggcgttggccggga 465 |||||||||| ||||||| ||| |||| Sbjct: 2008 cgtccttgagcgtggcgtcggcaggga 1982
>dbj|AB097429.1| Oryza sativa (japonica cultivar-group) transposon AnacA2(AOX) DNA, complete sequence Length = 2164 Score = 77.8 bits (39), Expect = 3e-11 Identities = 68/77 (88%), Gaps = 3/77 (3%) Strand = Plus / Minus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 |||||||||| |||||||||||||||||||| |||||||||||||| ||| |||| | Sbjct: 1186 ccgatgcgaaatggttgacgtcgcggtggtgcgcctcgtcggcgcg---gacgatgacaa 1130 Query: 439 cgtccttgagggtggcg 455 |||||||||| |||||| Sbjct: 1129 cgtccttgagcgtggcg 1113
>gb|AC074105.3| Oryza sativa chromosome 10 clone OSJNBa0030B02, complete sequence Length = 146836 Score = 77.8 bits (39), Expect = 3e-11 Identities = 75/87 (86%) Strand = Plus / Plus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 |||||||||| |||||||||||||||||||| ||||| ||||||| || ||| ||| | Sbjct: 110474 ccgatgcgaaatggttgacgtcgcggtggtgcgcctcatcggcgcagacaacgacgacga 110533 Query: 439 cgtccttgagggtggcgttggccggga 465 |||||||||| ||||||| ||| |||| Sbjct: 110534 cgtccttgagcgtggcgtcggcaggga 110560
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 77.8 bits (39), Expect = 3e-11 Identities = 75/87 (86%) Strand = Plus / Plus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 |||||||||| |||||||||||||||||||| ||||| ||||||| || ||| ||| | Sbjct: 2783698 ccgatgcgaaatggttgacgtcgcggtggtgcgcctcatcggcgcagacaacgacgacga 2783757 Query: 439 cgtccttgagggtggcgttggccggga 465 |||||||||| ||||||| ||| |||| Sbjct: 2783758 cgtccttgagcgtggcgtcggcaggga 2783784
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 77.8 bits (39), Expect = 3e-11 Identities = 68/77 (88%), Gaps = 3/77 (3%) Strand = Plus / Plus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 |||||||||| |||||||||||||||||||| |||||||||||||| ||| |||| | Sbjct: 3654211 ccgatgcgaaatggttgacgtcgcggtggtgcgcctcgtcggcgcg---gacgatgacaa 3654267 Query: 439 cgtccttgagggtggcg 455 |||||||||| |||||| Sbjct: 3654268 cgtccttgagcgtggcg 3654284
>dbj|AP002854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0014B15 Length = 158821 Score = 77.8 bits (39), Expect = 3e-11 Identities = 68/77 (88%), Gaps = 3/77 (3%) Strand = Plus / Plus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 |||||||||| |||||||||||||||||||| |||||||||||||| ||| |||| | Sbjct: 48439 ccgatgcgaaatggttgacgtcgcggtggtgcgcctcgtcggcgcg---gacgatgacaa 48495 Query: 439 cgtccttgagggtggcg 455 |||||||||| |||||| Sbjct: 48496 cgtccttgagcgtggcg 48512
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 77.8 bits (39), Expect = 3e-11 Identities = 75/87 (86%) Strand = Plus / Plus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 |||||||||| |||||||||||||||||||| ||||| ||||||| || ||| ||| | Sbjct: 2783649 ccgatgcgaaatggttgacgtcgcggtggtgcgcctcatcggcgcagacaacgacgacga 2783708 Query: 439 cgtccttgagggtggcgttggccggga 465 |||||||||| ||||||| ||| |||| Sbjct: 2783709 cgtccttgagcgtggcgtcggcaggga 2783735
>ref|XM_473445.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 378 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Minus Query: 378 tccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacc 437 ||||||||||| |||||||||||||||||||| ||||||||||| || || || ||| Sbjct: 320 tccgatgcgaaatggttgacgtcgcggtggtgcgcctcgtcggcacgaacaacaacgacg 261 Query: 438 acgtccttgagggtggcg 455 ||||||||||| |||||| Sbjct: 260 acgtccttgagcgtggcg 243
>emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02, complete sequence Length = 173522 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 |||||||||| |||||||||||||||||||| ||||||||||| || || || ||| | Sbjct: 134813 ccgatgcgaaatggttgacgtcgcggtggtgcgcctcgtcggcacgaacaacaacgacga 134754 Query: 439 cgtccttgagggtggcg 455 |||||||||| |||||| Sbjct: 134753 cgtccttgagcgtggcg 134737
>dbj|AB097431.1| Oryza sativa (japonica cultivar-group) transposon AnacA4(AOX) DNA, complete sequence Length = 2115 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 379 ccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgacca 438 |||||||||| |||||||||||||||||||| ||||||||||| || || || ||| | Sbjct: 1144 ccgatgcgaaatggttgacgtcgcggtggtgcgcctcgtcggcacgaacaacaacgacga 1085 Query: 439 cgtccttgagggtggcg 455 |||||||||| |||||| Sbjct: 1084 cgtccttgagcgtggcg 1068
>dbj|AB183695.1| Symplocarpus foetidus SfAOX mRNA for skunk cabbage alternative oxidase, complete cds Length = 1233 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Minus Query: 377 gtccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcg 424 |||||| || ||||||||||||||||||||||| |||||||||||||| Sbjct: 1095 gtccgaggcaaagtggttgacgtcgcggtggtgggcctcgtcggcgcg 1048
>gb|AY059646.1| Zea mays alternative oxidase AOX1 precursor (Aox1) mRNA, nuclear gene encoding mitochondrial protein, complete cds Length = 1519 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 377 gtccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcgcaccacggtgac 436 |||||| || ||||| ||||||||||||||||| |||||||||| |||||||||| || Sbjct: 1110 gtccgacgcaaagtgattgacgtcgcggtggtgcgcctcgtcggagcgcaccacgacaac 1051 Query: 437 cacgtccttgag 448 ||| |||||||| Sbjct: 1050 cacatccttgag 1039
>dbj|AB190213.1| Philodendron bipinnatifidum PsAOX mRNA for alternative oxidase, complete cds Length = 1283 Score = 71.9 bits (36), Expect = 2e-09 Identities = 90/108 (83%) Strand = Plus / Minus Query: 317 gcctcagtggtatccgatcggcgccggggtggccttcagctccataccctggtagtacac 376 |||||||||||| || | |||||| || | ||||||||||| ||| ||||||| | Sbjct: 1107 gcctcagtggtacccaagcggcgctggcgccgccttcagctcatgaccttggtagtggat 1048 Query: 377 gtccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggcgcg 424 ||| || |||||||||||||||||||||||||| |||||||| ||||| Sbjct: 1047 gtcggaagcgaagtggttgacgtcgcggtggtgggcctcgtctgcgcg 1000
>gb|AF040566.1|AF040566 Zea mays alternative oxidase (Aox) gene, partial cds Length = 447 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 405 tggtgagcctcgtcggcgcgcaccacggtgaccacgtccttgagggtggcgtt 457 |||||||| ||||||||||| || |||||||| ||||||||||| |||||||| Sbjct: 446 tggtgagcttcgtcggcgcggacgacggtgactacgtccttgagcgtggcgtt 394
>gb|AY422689.1| Nicotiana attenuata tissue-type shoot mitochondrial alternative oxidase (AOX2) mRNA, complete cds Length = 1278 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 381 gatgcgaagtggttgacgtcgcggtggtgagcctcgtc 418 ||||| ||||||||||| |||||||| ||||||||||| Sbjct: 1102 gatgcaaagtggttgacatcgcggtgatgagcctcgtc 1065
>gb|AY422688.1| Nicotiana attenuata tissue-type shoot mitochondrial alternative oxidase (AOX1) mRNA, complete cds Length = 1420 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Minus Query: 381 gatgcgaagtggttgacgtcgcggtggtgagcctc 415 ||||| ||||||||||| |||||||| |||||||| Sbjct: 1090 gatgcaaagtggttgacatcgcggtgatgagcctc 1056
>gb|AC108501.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1354_D07, complete sequence Length = 156163 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Plus Query: 398 gtcgcggtggtgagcctcgtcggcgcgcaccacggtgaccacgtcct 444 ||||| |||||| |||||||||||||| | |||||||| ||||||| Sbjct: 69974 gtcgcagtggtgcgcctcgtcggcgcggatgacggtgacgacgtcct 70020
>gb|DQ100441.1| Vigna unguiculata mitochondrial alternative oxidase 1 mRNA, complete cds; nuclear gene for mitochondrial product Length = 951 Score = 44.1 bits (22), Expect = 0.40 Identities = 37/42 (88%) Strand = Plus / Minus Query: 377 gtccgatgcgaagtggttgacgtcgcggtggtgagcctcgtc 418 |||||| || ||||||||||| || |||||||| |||||||| Sbjct: 894 gtccgaagcaaagtggttgacatcacggtggtgtgcctcgtc 853
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 389 gtggttgacgtcgcggtggtgagcctcgtc 418 ||||||||||||||||||||| || ||||| Sbjct: 1631710 gtggttgacgtcgcggtggtgcgcttcgtc 1631739
>gb|S71335.1| Aox1=alternative oxidase {alternative pathway} [Nicotiana tabacum=tobacco, cv Bright Yellow, suspension cells, mRNA, 1408 nt] Length = 1408 Score = 44.1 bits (22), Expect = 0.40 Identities = 34/38 (89%) Strand = Plus / Minus Query: 381 gatgcgaagtggttgacgtcgcggtggtgagcctcgtc 418 ||||| ||||||||||| || ||||| ||||||||||| Sbjct: 1071 gatgcaaagtggttgacatcacggtgatgagcctcgtc 1034
>emb|AJ538951.1|NTA538951 Nicotiana tabacum cDNA-AFLP-fragment BT3-M24-001 Length = 649 Score = 44.1 bits (22), Expect = 0.40 Identities = 34/38 (89%) Strand = Plus / Minus Query: 381 gatgcgaagtggttgacgtcgcggtggtgagcctcgtc 418 ||||| ||||||||||| || ||||| ||||||||||| Sbjct: 555 gatgcaaagtggttgacatcacggtgatgagcctcgtc 518
>emb|AJ718098.1| Nicotiana tabacum cDNA-AFLP-fragment BSTT3-24-600, cultivar Bright Yellow 2 Length = 637 Score = 44.1 bits (22), Expect = 0.40 Identities = 34/38 (89%) Strand = Plus / Minus Query: 381 gatgcgaagtggttgacgtcgcggtggtgagcctcgtc 418 ||||| ||||||||||| || ||||| ||||||||||| Sbjct: 547 gatgcaaagtggttgacatcacggtgatgagcctcgtc 510
>emb|AJ489270.1|CSA489270 Crocus sativus partial mRNA for alternative oxidase Length = 681 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Minus Query: 377 gtccgatgcgaagtggttgacgtcgcggtggtgagcctcgtcggc 421 |||||| || ||||| ||||||||||| || |||||||| ||||| Sbjct: 414 gtccgaagcaaagtgattgacgtcgcgatgatgagcctcatcggc 370
>gb|AC122451.3| Mus musculus BAC clone RP24-252G15 from 16, complete sequence Length = 160256 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 aaagaaaaggaacagtaata 23 |||||||||||||||||||| Sbjct: 39750 aaagaaaaggaacagtaata 39769
>ref|XM_644660.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (274.t00013) partial mRNA Length = 744 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 tcaaaacgaaacactcattt 272 |||||||||||||||||||| Sbjct: 204 tcaaaacgaaacactcattt 223
>emb|CR407594.22| Zebrafish DNA sequence from clone DKEY-122C11 in linkage group 4, complete sequence Length = 160262 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 tagcgatgcaaaattcagca 304 |||||||||||||||||||| Sbjct: 20972 tagcgatgcaaaattcagca 20953
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 418 cggcgcgcaccacggtgaccacgtcctt 445 ||||||||||||||| || ||||||||| Sbjct: 1357570 cggcgcgcaccacggcgagcacgtcctt 1357543
>gb|AC161457.5| Mus musculus BAC clone RP23-156A3 from chromosome 16, complete sequence Length = 208176 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 aaagaaaaggaacagtaata 23 |||||||||||||||||||| Sbjct: 169883 aaagaaaaggaacagtaata 169902
>emb|AJ250581.1|STE250581 Streptomyces tendae nikkomycin biosynthetic gene cluster (nikP1, nikP2, nikQ, nikR, nikS, nikT, nikU, nikV genes), strain Tue901 Length = 9389 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 cggcgcgcaccacggtgacc 437 |||||||||||||||||||| Sbjct: 4409 cggcgcgcaccacggtgacc 4390
>emb|AJ250199.1|STE250199 Streptomyces tendae nikkomycin biosynthetic gene cluster (nikQ, nikR genes), strain Tue901 Length = 2218 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 cggcgcgcaccacggtgacc 437 |||||||||||||||||||| Sbjct: 1508 cggcgcgcaccacggtgacc 1489
>gb|DQ100440.1| Vigna unguiculata mitochondrial alternative oxidase 1 gene, complete cds; nuclear gene for mitochondrial product Length = 1543 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 387 aagtggttgacgtcgcggtggtgagcctcgtc 418 ||||||||||| || |||||||| |||||||| Sbjct: 1387 aagtggttgacatcacggtggtgtgcctcgtc 1356
>gb|AC093151.2| Homo sapiens chromosome 1 clone RP11-399E6, complete sequence Length = 188276 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 cgtaactgacaagcacactg 165 |||||||||||||||||||| Sbjct: 119899 cgtaactgacaagcacactg 119918
>gb|AC013799.6| Homo sapiens, clone RP11-20J1, complete sequence Length = 186076 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 tgtacatagtgaggtagatcaatg 62 ||||||||||||||||||| |||| Sbjct: 59591 tgtacatagtgaggtagatgaatg 59568
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 cggcgccggggtggccttca 354 |||||||||||||||||||| Sbjct: 1721041 cggcgccggggtggccttca 1721022
>emb|X79768.1|NTSR1AOX N.tabacum (SR1) aox mRNA Length = 1134 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 387 aagtggttgacgtcgcggtggtgagcctcgtc 418 ||||||||||| || ||||| ||||||||||| Sbjct: 862 aagtggttgacatcacggtgatgagcctcgtc 831
>dbj|AB055060.1| Catharanthus roseus gene for alternative oxidase, complete cds Length = 11471 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 388 agtggttgacgtcgcggtggtgagcctc 415 ||||||| || ||||||||||||||||| Sbjct: 5510 agtggttaacatcgcggtggtgagcctc 5483 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,671,841 Number of Sequences: 3902068 Number of extensions: 3671841 Number of successful extensions: 174720 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 174310 Number of HSP's gapped (non-prelim): 395 length of query: 465 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 443 effective length of database: 17,147,199,772 effective search space: 7596209498996 effective search space used: 7596209498996 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)