ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart26e04 |
|---|---|
| Clone Library Name | barley_pub |
>RL7A_ORYSA (P35685) 60S ribosomal protein L7a| Length = 258 Score = 120 bits (300), Expect = 1e-27 Identities = 59/61 (96%), Positives = 61/61 (100%) Frame = -2 Query: 357 TTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIAKEAAQR 178 TTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARE+L+AKEAAQR Sbjct: 197 TTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKAREKLLAKEAAQR 256 Query: 177 M 175 M Sbjct: 257 M 257
>RL7A_ARATH (P49692) 60S ribosomal protein L7a| Length = 257 Score = 117 bits (292), Expect = 9e-27 Identities = 56/62 (90%), Positives = 61/62 (98%) Frame = -2 Query: 357 TTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIAKEAAQR 178 TTVKNEDKLEFSKILEAIKANFNDK++E RKKWGGG+MGSKSQAKTKA+ER+IAKEAAQR Sbjct: 196 TTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVIAKEAAQR 255 Query: 177 MN 172 MN Sbjct: 256 MN 257
>RL7A_DROME (P46223) 60S ribosomal protein L7a| Length = 271 Score = 74.3 bits (181), Expect = 7e-14 Identities = 32/60 (53%), Positives = 44/60 (73%) Frame = -2 Query: 357 TTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIAKEAAQR 178 TTV N DK F K+LEA+K NFN++ +E+R+ WGGG++GSKS A+ ER A+E AQ+ Sbjct: 210 TTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILGSKSLARISKLERAKARELAQK 269
>RL7A_RAT (P62425) 60S ribosomal protein L7a| Length = 265 Score = 64.3 bits (155), Expect = 7e-11 Identities = 28/61 (45%), Positives = 43/61 (70%) Frame = -2 Query: 357 TTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIAKEAAQR 178 T V +EDK +K++EAI+ N+ND++DE+R+ WGG V+G KS A+ E+ AKE A + Sbjct: 204 TQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATK 263 Query: 177 M 175 + Sbjct: 264 L 264
>RL7A_MOUSE (P12970) 60S ribosomal protein L7a (Surfeit locus protein 3)| Length = 265 Score = 64.3 bits (155), Expect = 7e-11 Identities = 28/61 (45%), Positives = 43/61 (70%) Frame = -2 Query: 357 TTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIAKEAAQR 178 T V +EDK +K++EAI+ N+ND++DE+R+ WGG V+G KS A+ E+ AKE A + Sbjct: 204 TQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATK 263 Query: 177 M 175 + Sbjct: 264 L 264
>RL7A_HUMAN (P62424) 60S ribosomal protein L7a (Surfeit locus protein 3) (PLA-X| polypeptide) Length = 265 Score = 64.3 bits (155), Expect = 7e-11 Identities = 28/61 (45%), Positives = 43/61 (70%) Frame = -2 Query: 357 TTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIAKEAAQR 178 T V +EDK +K++EAI+ N+ND++DE+R+ WGG V+G KS A+ E+ AKE A + Sbjct: 204 TQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATK 263 Query: 177 M 175 + Sbjct: 264 L 264
>RL7A_FUGRU (O57592) 60S ribosomal protein L7a (Surfeit locus protein 3)| Length = 265 Score = 63.9 bits (154), Expect = 9e-11 Identities = 27/61 (44%), Positives = 42/61 (68%) Frame = -2 Query: 357 TTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIAKEAAQR 178 T EDK +K++EAIK N+ND+++E+R+ WGGG++G KS A+ E+ AKE A + Sbjct: 204 TQTNPEDKGALAKLVEAIKTNYNDRYEEIRRHWGGGILGPKSTARINKLEKAKAKELATK 263 Query: 177 M 175 + Sbjct: 264 L 264
>RL7A_CHICK (P32429) 60S ribosomal protein L7a| Length = 265 Score = 63.9 bits (154), Expect = 9e-11 Identities = 28/61 (45%), Positives = 42/61 (68%) Frame = -2 Query: 357 TTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIAKEAAQR 178 T V EDK +K++EA+K N+ND++DE+R+ WGG V+G KS A+ E+ AKE A + Sbjct: 204 TQVNPEDKGALAKLVEAVKTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATK 263 Query: 177 M 175 + Sbjct: 264 L 264
>RL7A_ANOGA (O76732) 60S ribosomal protein L7a| Length = 271 Score = 62.4 bits (150), Expect = 3e-10 Identities = 26/60 (43%), Positives = 40/60 (66%) Frame = -2 Query: 357 TTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIAKEAAQR 178 T +N DK +K++E IK NFND+FD++R+ WGGG++G KS A+ E+ +E Q+ Sbjct: 211 TQFENADKPNLAKLVETIKTNFNDRFDDIRRHWGGGLLGPKSMARLAKLEKAKKREMLQK 270
>RL7A_ICTPU (Q90YW2) 60S ribosomal protein L7a| Length = 265 Score = 60.8 bits (146), Expect = 8e-10 Identities = 25/61 (40%), Positives = 40/61 (65%) Frame = -2 Query: 357 TTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIAKEAAQR 178 T ED+ +K++EAIK N+ND+++E+R+ WGG +MG KS A+ E+ KE A + Sbjct: 204 TQTNPEDRAALAKLVEAIKTNYNDRYEEIRRHWGGNIMGPKSTARIAKLEKAKGKELATK 263 Query: 177 M 175 + Sbjct: 264 L 264
>RL8_SCHPO (O13672) 60S ribosomal protein L8 (L7A) (L4)| Length = 258 Score = 60.5 bits (145), Expect = 1e-09 Identities = 27/54 (50%), Positives = 37/54 (68%) Frame = -2 Query: 357 TTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIA 196 T V+ EDK E + I+ A+ ANF+ K+DE R+KWGGG+MG K+QA R + A Sbjct: 200 TEVREEDKNELASIVSAVDANFSAKYDESRRKWGGGIMGGKTQALLAKRAKAAA 253
>RL8B_YEAST (P29453) 60S ribosomal protein L8-B (L7A-1) (L4-1) (YL5) (RP6)| Length = 255 Score = 59.7 bits (143), Expect = 2e-09 Identities = 25/51 (49%), Positives = 37/51 (72%) Frame = -2 Query: 357 TTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARER 205 T V+ ED+ +K++ I ANF DK+DEV+K WGGG++G+K+QAK R + Sbjct: 200 TEVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGNKAQAKMDKRAK 250
>RL8A_YEAST (P17076) 60S ribosomal protein L8-A (L7A-2) (L4-2) (YL5) (RP6)| (Maintenance of killer protein 7) Length = 255 Score = 59.7 bits (143), Expect = 2e-09 Identities = 25/51 (49%), Positives = 37/51 (72%) Frame = -2 Query: 357 TTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARER 205 T V+ ED+ +K++ I ANF DK+DEV+K WGGG++G+K+QAK R + Sbjct: 200 TEVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGNKAQAKMDKRAK 250
>RL7A_CAEEL (Q966C6) 60S ribosomal protein L7a| Length = 264 Score = 54.3 bits (129), Expect = 7e-08 Identities = 24/54 (44%), Positives = 36/54 (66%) Frame = -2 Query: 351 VKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIAKE 190 V EDK +K++E + NF+++ +E+RK WGGGVM +KS AK ER A++ Sbjct: 207 VNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDAKKLKIERARARD 260
>NU1M_ASCSU (P24875) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 290 Score = 33.5 bits (75), Expect = 0.13 Identities = 18/40 (45%), Positives = 23/40 (57%) Frame = -1 Query: 121 STVESYCGFLILCSVRQTYAKIR*GLPMFGFYIVLCPVSV 2 S V YC F IL VR +Y + R L M+ F+ L PVS+ Sbjct: 240 SYVVIYCMFTILVFVRSSYPRFRYDLMMYFFWFKLLPVSL 279
>DRL26_ARATH (Q84WD3) Probable disease resistance protein At4g19060| Length = 383 Score = 31.6 bits (70), Expect = 0.50 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Frame = -2 Query: 348 KNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVM-GSKSQ 229 K E K EF K LE IK++FN++++ KW G GS S+ Sbjct: 14 KLESKSEFDKELEKIKSSFNEEYE----KWSSGKQRGSSSK 50
>PYRG_AZOBR (P28595) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP| synthetase) Length = 544 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = +3 Query: 33 PNMGKPHLIFA*VWRT-EQRIRKPQYDSTVLLKGNYMAYALTYKS 164 P GKP L W + +R+RKPQ + T+ + G Y + +YKS Sbjct: 266 PTEGKPDLSR---WTSIVERVRKPQGEVTIAVVGKYTSLLDSYKS 307
>VP8_WTV (P17380) Outer capsid protein P8 (Structural protein P8)| Length = 427 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/37 (32%), Positives = 24/37 (64%) Frame = -3 Query: 113 GIVLWFPDSLFRSPDLCKDQMRFTHVWILYSFMSCFG 3 G++L F D ++ +L ++ H+W++YSF++ FG Sbjct: 388 GVILSFID---QNINLQTRRLMVRHLWVIYSFIAVFG 421
>CDC37_CHICK (O57476) Hsp90 co-chaperone Cdc37 (Hsp90 chaperone protein| kinase-targeting subunit) (p50Cdc37) Length = 393 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = -1 Query: 259 GWWCHGLQVAGEDQGQGKAHRQGGCAEDE 173 G W + A E GQG AH Q G A+ E Sbjct: 345 GLWVPNAKAAAEGGGQGGAHGQPGGADSE 373
>NADE_BACHD (Q9KAK2) NH(3)-dependent NAD(+) synthetase (EC 6.3.1.5)| Length = 272 Score = 27.7 bits (60), Expect = 7.2 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%) Frame = -2 Query: 342 EDKLEFSKILEAIKANFNDKFDEVRKKWG---GGVMGSKSQAKTKARERLIAK 193 +D + F K +I N D D K + G V+ ++ TKARER+ A+ Sbjct: 92 QDAIAFIKPSRSITVNIKDAVDASTKSFEQATGEVLSDFNKGNTKARERMKAQ 144
>IMB3_YEAST (P32337) Importin beta-3 subunit (Karyopherin beta-3 subunit)| (Protein secretion enhancer 1) Length = 1089 Score = 27.7 bits (60), Expect = 7.2 Identities = 10/31 (32%), Positives = 19/31 (61%) Frame = +2 Query: 62 CISLANGTENQETTIRFHSAAKGKLHGICSD 154 C+ A GT+N+E + +H A+ + G+ S+ Sbjct: 731 CLLAATGTQNEELVLLWHKASSKLIGGLMSE 761
>HMGB_TETTH (P40626) High mobility group protein B (Nonhistone chromosomal| protein LG-2) Length = 143 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/55 (23%), Positives = 30/55 (54%) Frame = -2 Query: 342 EDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIAKEAAQR 178 ++K ++ + KA ++ + D+ ++K+G K QAK +E+ +AA++ Sbjct: 62 KEKQKYEEAYRKEKATYDKQNDQWKEKYGDIEKSLKDQAKKALKEKTKKSKAAEK 116
>GALM_LACHE (Q00053) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase) (Fragment)| Length = 129 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/47 (36%), Positives = 21/47 (44%) Frame = -1 Query: 316 LGGYQGELQ*QVR*GQEEVGWWCHGLQVAGEDQGQGKAHRQGGCAED 176 LGG G + +VR GQ W HGL+ G+ H GG D Sbjct: 65 LGGTVGRIAGRVRKGQ-----WRHGLETHQLPINDGENHIHGGIGTD 106 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,979,458 Number of Sequences: 219361 Number of extensions: 825628 Number of successful extensions: 2362 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2332 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2362 length of database: 80,573,946 effective HSP length: 94 effective length of database: 59,954,012 effective search space used: 1438896288 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
