ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart26e02 |
|---|---|
| Clone Library Name | barley_pub |
>DCE1_ARATH (Q42521) Glutamate decarboxylase 1 (EC 4.1.1.15) (GAD 1)| Length = 502 Score = 79.7 bits (195), Expect = 2e-15 Identities = 43/81 (53%), Positives = 53/81 (65%), Gaps = 9/81 (11%) Frame = -1 Query: 413 REDFSRTFAERLVIDIEKVLHELDALPSR-----SSGPSLQHPKGD----TVSEKDLARQ 261 REDFSRT AERLVIDIEKV+ ELD LPSR S G D TV + D+ +Q Sbjct: 422 REDFSRTLAERLVIDIEKVMRELDELPSRVIHKISLGQEKSESNSDNLMVTVKKSDIDKQ 481 Query: 260 REVVSVWKRAVAARKKTQGVC 198 R++++ WK+ VA RKKT G+C Sbjct: 482 RDIITGWKKFVADRKKTSGIC 502
>DCE2_ARATH (Q42472) Glutamate decarboxylase 2 (EC 4.1.1.15) (GAD 2)| Length = 494 Score = 68.9 bits (167), Expect = 4e-12 Identities = 38/74 (51%), Positives = 46/74 (62%), Gaps = 2/74 (2%) Frame = -1 Query: 413 REDFSRTFAERLVIDIEKVLHELDALPSRSSGPSLQHPKGDTVSEKDLARQ--REVVSVW 240 REDFSRT AERLV DI KVLHELD LPS+ S + V EK + ++ EV+ W Sbjct: 421 REDFSRTLAERLVADISKVLHELDTLPSKISKKMGIEGIAENVKEKKMEKEILMEVIVGW 480 Query: 239 KRAVAARKKTQGVC 198 ++ V RKK GVC Sbjct: 481 RKFVKERKKMNGVC 494
>DCE_PETHY (Q07346) Glutamate decarboxylase (EC 4.1.1.15) (GAD)| Length = 500 Score = 61.6 bits (148), Expect = 7e-10 Identities = 39/79 (49%), Positives = 47/79 (59%), Gaps = 7/79 (8%) Frame = -1 Query: 413 REDFSRTFAERLVIDIEKVLHELDALPSR-----SSGPSLQHPKGDTVSEK-DLARQREV 252 REDFSRT AERLV DIEKVLHELD LP+R + G V +K D Q E+ Sbjct: 422 REDFSRTLAERLVRDIEKVLHELDTLPARVNAKLAVAEEQAAANGSEVHKKTDSEVQLEM 481 Query: 251 VSVWKRAV-AARKKTQGVC 198 ++ WK+ V +KKT VC Sbjct: 482 ITAWKKFVEEKKKKTNRVC 500
>DCE_LYCES (P54767) Glutamate decarboxylase (EC 4.1.1.15) (GAD) (ERT D1)| Length = 502 Score = 53.5 bits (127), Expect = 2e-07 Identities = 35/87 (40%), Positives = 43/87 (49%), Gaps = 15/87 (17%) Frame = -1 Query: 413 REDFSRTFAERLVIDIEKVLHELDALPSR---------------SSGPSLQHPKGDTVSE 279 REDFS + AERLV DIEK+L ELD P R G L H DTV Sbjct: 423 REDFSHSLAERLVSDIEKILSELDTQPPRLPTKAVRVTAEEVRDDKGDGLHHFHMDTVE- 481 Query: 278 KDLARQREVVSVWKRAVAARKKTQGVC 198 Q++++ W++ A KKT GVC Sbjct: 482 ----TQKDIIKHWRK--IAGKKTSGVC 502
>ANC1_CAEEL (Q9N4M4) Nuclear anchorage protein 1 (Anchorage 1 protein) (Nesprin| homolog) Length = 8545 Score = 30.8 bits (68), Expect = 1.3 Identities = 18/41 (43%), Positives = 23/41 (56%) Frame = -1 Query: 350 ELDALPSRSSGPSLQHPKGDTVSEKDLARQREVVSVWKRAV 228 E D+L SRS G P T+SE+ L RQR S W+R + Sbjct: 8456 EFDSLDSRSDGLLSPIPDDSTLSEEQLRRQR---SRWRRVL 8493
>BLNK_HUMAN (Q8WV28) B-cell linker protein (Cytoplasmic adapter protein)| (B-cell adapter containing SH2 domain protein) (B-cell adapter containing Src homology 2 domain protein) (Src homology 2 domain-containing leukocyte protein of 65 kDa) (SLP-65) Length = 456 Score = 30.0 bits (66), Expect = 2.2 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +1 Query: 58 GSNNGARRTINPAP*KPSRAREA*HKIITEIKSSRTAGEVNRLSSAQQTP 207 G N+GA T +P P PS A K T +K++ A + N S ++ P Sbjct: 226 GRNSGAWETKSPPPAAPSPLPRAGKKPTTPLKTTPVASQQNASSVCEEKP 275
>CCHCR_GORGO (Q8HZ59) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 30.0 bits (66), Expect = 2.2 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -1 Query: 317 PSLQHPKGDTVSEKDLARQREVVSVWKRAVAARKKTQG 204 P +Q P VSE+ L QR V++W+R V++ ++ G Sbjct: 36 PLVQPPGHQDVSERQLDTQRPQVTMWERDVSSDRQEPG 73
>RPOB_MYCPA (Q73SE4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1175 Score = 29.6 bits (65), Expect = 2.9 Identities = 17/55 (30%), Positives = 28/55 (50%) Frame = -1 Query: 392 FAERLVIDIEKVLHELDALPSRSSGPSLQHPKGDTVSEKDLARQREVVSVWKRAV 228 F E + EK LH + +PSR + K DTV + ++R+ V+V +A+ Sbjct: 187 FDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKAL 241
>RPOB_MYCLE (P30760) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1178 Score = 29.6 bits (65), Expect = 2.9 Identities = 17/55 (30%), Positives = 28/55 (50%) Frame = -1 Query: 392 FAERLVIDIEKVLHELDALPSRSSGPSLQHPKGDTVSEKDLARQREVVSVWKRAV 228 F E + EK LH + +PSR + K DTV + ++R+ V+V +A+ Sbjct: 187 FDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKAL 241
>TILS_ACIAD (Q6F880) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 459 Score = 29.3 bits (64), Expect = 3.7 Identities = 20/63 (31%), Positives = 32/63 (50%) Frame = -1 Query: 413 REDFSRTFAERLVIDIEKVLHELDALPSRSSGPSLQHPKGDTVSEKDLARQREVVSVWKR 234 +E SRT L+ D +++LHE+ G L H + + LARQR+++S W + Sbjct: 218 QEAISRTSI--LMQDADEILHEVLQQDLNQCG-DLNHLDLSRLQQLSLARQRQLLSFWMK 274 Query: 233 AVA 225 A Sbjct: 275 GKA 277
>CCHCR_PONPY (Q8HZ58) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 29.3 bits (64), Expect = 3.7 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -1 Query: 317 PSLQHPKGDTVSEKDLARQREVVSVWKRAVAARKKTQG 204 P +Q P VSE+ L QR V++W+R V++ ++ G Sbjct: 36 PLVQPPGHQDVSERRLDTQRPQVTMWERDVSSDRQEPG 73
>CCHCR_PANTR (Q8HZ60) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 29.3 bits (64), Expect = 3.7 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -1 Query: 317 PSLQHPKGDTVSEKDLARQREVVSVWKRAVAARKKTQG 204 P +Q P VSE+ L QR V++W+R V++ ++ G Sbjct: 36 PLVQPPGHQDVSERRLDTQRPQVTMWERDVSSDRQEPG 73
>CCHCR_PANPA (Q8HZ57) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 29.3 bits (64), Expect = 3.7 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -1 Query: 317 PSLQHPKGDTVSEKDLARQREVVSVWKRAVAARKKTQG 204 P +Q P VSE+ L QR V++W+R V++ ++ G Sbjct: 36 PLVQPPGHQDVSERRLDTQRPQVTMWERDVSSDRQEPG 73
>CCHCR_HUMAN (Q8TD31) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) (Putative gene 8 protein) (Pg8) Length = 782 Score = 29.3 bits (64), Expect = 3.7 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -1 Query: 317 PSLQHPKGDTVSEKDLARQREVVSVWKRAVAARKKTQG 204 P +Q P VSE+ L QR V++W+R V++ ++ G Sbjct: 36 PLVQPPGHQDVSERRLDTQRPQVTMWERDVSSDRQEPG 73
>C49A1_DROME (Q9V5L3) Probable cytochrome P450 49a1 (EC 1.14.-.-) (CYPXLIXA1)| Length = 589 Score = 28.9 bits (63), Expect = 4.9 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = -1 Query: 371 DIEKVLHELDALPSRSSGPSLQHPKGD 291 +I + + +A+P R S PSL+H KGD Sbjct: 164 EIRNIFKKEEAMPHRPSMPSLRHYKGD 190
>YUAR_ECOLI (P34211) Hypothetical protein yuaR precursor| Length = 499 Score = 28.9 bits (63), Expect = 4.9 Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 8/99 (8%) Frame = -1 Query: 401 SRTFAERLVIDIEKVLHELDALPSRSSGPSLQHPKGDTVSEKDLARQREVVSVWKR---- 234 +RT + L D + +H+ L + L +G+++S DL + +W+ Sbjct: 264 ARTKSCPLSSDRNQAIHQFHQLLLKLHNSPLTDSRGESISSDDLISLTTELLLWRSSWPT 323 Query: 233 -AVAARKKTQGVC*AELRRFTSPAVRDDFIS---VIILC 129 A A R+ +QG+ E+ + ++ + +S +ILC Sbjct: 324 LATAVRQFSQGIVSNEIETALNSSIASEKVSDALGVILC 362
>MIAA_BORPE (Q7U366) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 313 Score = 28.5 bits (62), Expect = 6.4 Identities = 15/30 (50%), Positives = 20/30 (66%) Frame = +3 Query: 315 RPAAARGERVQLVEHLLDVDDQALGEGAAE 404 +P+AA ER Q+ +HLLD+ D A AAE Sbjct: 50 KPSAA--ERAQVPQHLLDIRDPAQSYSAAE 77
>MIAA_BORBR (Q7U383) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 313 Score = 28.5 bits (62), Expect = 6.4 Identities = 15/30 (50%), Positives = 20/30 (66%) Frame = +3 Query: 315 RPAAARGERVQLVEHLLDVDDQALGEGAAE 404 +P+AA ER Q+ +HLLD+ D A AAE Sbjct: 50 KPSAA--ERAQVPQHLLDIRDPAQSYSAAE 77
>RPOB_MYCTU (P0A680) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1178 Score = 28.5 bits (62), Expect = 6.4 Identities = 16/55 (29%), Positives = 28/55 (50%) Frame = -1 Query: 392 FAERLVIDIEKVLHELDALPSRSSGPSLQHPKGDTVSEKDLARQREVVSVWKRAV 228 F E + +K LH + +PSR + K DTV + ++R+ V+V +A+ Sbjct: 187 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKAL 241
>RPOB_MYCBO (P0A681) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1178 Score = 28.5 bits (62), Expect = 6.4 Identities = 16/55 (29%), Positives = 28/55 (50%) Frame = -1 Query: 392 FAERLVIDIEKVLHELDALPSRSSGPSLQHPKGDTVSEKDLARQREVVSVWKRAV 228 F E + +K LH + +PSR + K DTV + ++R+ V+V +A+ Sbjct: 187 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKAL 241
>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2| Length = 1033 Score = 28.1 bits (61), Expect = 8.3 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%) Frame = -3 Query: 384 APGHRHREGAPR---AGRAPLAQQRAVPAAP 301 AP R APR A +AP AQQ A P+AP Sbjct: 87 APAAGDRAAAPRPSAAPKAPAAQQPAAPSAP 117
>RPOB2_MYCSM (P60281) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1169 Score = 28.1 bits (61), Expect = 8.3 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = -1 Query: 392 FAERLVIDIEKVLHELDALPSRSSGPSLQHPKGDTVSEKDLARQREVVSVWKRAV 228 F E + EK LH + +P R + K DTV + ++R+ V+V +A+ Sbjct: 178 FDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKAL 232
>RPOB1_MYCSM (Q50388) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1169 Score = 28.1 bits (61), Expect = 8.3 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = -1 Query: 392 FAERLVIDIEKVLHELDALPSRSSGPSLQHPKGDTVSEKDLARQREVVSVWKRAV 228 F E + EK LH + +P R + K DTV + ++R+ V+V +A+ Sbjct: 178 FDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKAL 232 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,490,474 Number of Sequences: 219361 Number of extensions: 713575 Number of successful extensions: 2185 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2149 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2181 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
