ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart26e02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF528524.1| Triticum aestivum putative glutamate decarboxylase 1 mRNA, partial cds Length = 383 Score = 367 bits (185), Expect = 2e-98 Identities = 206/213 (96%) Strand = Plus / Minus Query: 198 gcagacgccctgggtcttcttcctggcggcgacggccctcttccagacggacaccacctc 257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 383 gcagacgccctgggtcttcttcctggcggcgacggccctcttccagacggacaccacctc 324 Query: 258 gcgctgcctcgccaggtccttctcgctcaccgtgtcgcccttggggtgctgcagggacgg 317 ||||||||| || |||||||||||||||||||||||||| |||||||||||||||| || Sbjct: 323 gcgctgcctggcgaggtccttctcgctcaccgtgtcgccgttggggtgctgcagggcggg 264 Query: 318 cccgctgctgcgcgaggggagcgcgtccagctcgtggagcaccttctcgatgtcgatgac 377 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 263 cccgctgctgcgcgaggggagcgcgtcgagctcgtggagcaccttctcgatgtcgatgac 204 Query: 378 caggcgctcggcgaaggtgcggctgaagtcctc 410 |||||||||||||||||||||||||||||||| Sbjct: 203 gaggcgctcggcgaaggtgcggctgaagtcctc 171
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 93.7 bits (47), Expect = 4e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 331 gaggggagcgcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcg 390 |||||||||||||| |||| || | ||||||||||||||||| ||| |||||||||||| Sbjct: 7153158 gaggggagcgcgtcgagctggtacatcaccttctcgatgtcgaggacgaggcgctcggcg 7153099 Query: 391 aaggtgcggctgaagtcctcccg 413 | |||||||||||| |||||||| Sbjct: 7153098 agggtgcggctgaactcctcccg 7153076 Score = 91.7 bits (46), Expect = 2e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 333 ggggagcgcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcgaa 392 |||||||||||| |||||||| ||||||||||||| ||||| || ||||||||||||| Sbjct: 28914582 ggggagcgcgtcgagctcgtgcagcaccttctcgacgtcgagcacgaggcgctcggcgag 28914523 Query: 393 ggtgcggctgaagtcctc 410 ||||||||||||||||| Sbjct: 28914522 cgtgcggctgaagtcctc 28914505 Score = 58.0 bits (29), Expect = 2e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 197 agcagacgccctgggtcttcttcctggcggcgacggccctcttccagacggacaccacct 256 |||||||||| | |||||||||| |||| |||||||||||||||| ||| | ||||| Sbjct: 28914715 agcagacgccgttggtcttcttcttggccagcacggccctcttccagagggagatcacct 28914656 Query: 257 cgcgctgcctcgccaggtccttctcgctc 285 |||||||| || ||| ||| |||||||| Sbjct: 28914655 cgcgctgcttctccatctccctctcgctc 28914627
>gb|AY318775.1| Oryza sativa glutamate decarboxylase (GAD) gene, GAD-3 allele, complete cds Length = 2441 Score = 93.7 bits (47), Expect = 4e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 331 gaggggagcgcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcg 390 |||||||||||||| |||| || | ||||||||||||||||| ||| |||||||||||| Sbjct: 2305 gaggggagcgcgtcgagctggtacatcaccttctcgatgtcgaggacgaggcgctcggcg 2246 Query: 391 aaggtgcggctgaagtcctcccg 413 | |||||||||||| |||||||| Sbjct: 2245 agggtgcggctgaactcctcccg 2223
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 93.7 bits (47), Expect = 4e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 331 gaggggagcgcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcg 390 |||||||||||||| |||| || | ||||||||||||||||| ||| |||||||||||| Sbjct: 7151053 gaggggagcgcgtcgagctggtacatcaccttctcgatgtcgaggacgaggcgctcggcg 7150994 Query: 391 aaggtgcggctgaagtcctcccg 413 | |||||||||||| |||||||| Sbjct: 7150993 agggtgcggctgaactcctcccg 7150971 Score = 91.7 bits (46), Expect = 2e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 333 ggggagcgcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcgaa 392 |||||||||||| |||||||| ||||||||||||| ||||| || ||||||||||||| Sbjct: 29006004 ggggagcgcgtcgagctcgtgcagcaccttctcgacgtcgagcacgaggcgctcggcgag 29005945 Query: 393 ggtgcggctgaagtcctc 410 ||||||||||||||||| Sbjct: 29005944 cgtgcggctgaagtcctc 29005927 Score = 58.0 bits (29), Expect = 2e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 197 agcagacgccctgggtcttcttcctggcggcgacggccctcttccagacggacaccacct 256 |||||||||| | |||||||||| |||| |||||||||||||||| ||| | ||||| Sbjct: 29006137 agcagacgccgttggtcttcttcttggccagcacggccctcttccagagggagatcacct 29006078 Query: 257 cgcgctgcctcgccaggtccttctcgctc 285 |||||||| || ||| ||| |||||||| Sbjct: 29006077 cgcgctgcttctccatctccctctcgctc 29006049
>gb|AY187941.1| Oryza sativa (japonica cultivar-group) glutamate decarboxylase (GAD3) mRNA, complete cds Length = 1502 Score = 93.7 bits (47), Expect = 4e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 331 gaggggagcgcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcg 390 |||||||||||||| |||| || | ||||||||||||||||| ||| |||||||||||| Sbjct: 1366 gaggggagcgcgtcgagctggtacatcaccttctcgatgtcgaggacgaggcgctcggcg 1307 Query: 391 aaggtgcggctgaagtcctcccg 413 | |||||||||||| |||||||| Sbjct: 1306 agggtgcggctgaactcctcccg 1284
>gb|AC137696.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0049C20, from chromosome 3, complete sequence Length = 136098 Score = 93.7 bits (47), Expect = 4e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 331 gaggggagcgcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcg 390 |||||||||||||| |||| || | ||||||||||||||||| ||| |||||||||||| Sbjct: 41180 gaggggagcgcgtcgagctggtacatcaccttctcgatgtcgaggacgaggcgctcggcg 41239 Query: 391 aaggtgcggctgaagtcctcccg 413 | |||||||||||| |||||||| Sbjct: 41240 agggtgcggctgaactcctcccg 41262
>dbj|AK071556.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101A16, full insert sequence Length = 2018 Score = 93.7 bits (47), Expect = 4e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 331 gaggggagcgcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcg 390 |||||||||||||| |||| || | ||||||||||||||||| ||| |||||||||||| Sbjct: 1543 gaggggagcgcgtcgagctggtacatcaccttctcgatgtcgaggacgaggcgctcggcg 1484 Query: 391 aaggtgcggctgaagtcctcccg 413 | |||||||||||| |||||||| Sbjct: 1483 agggtgcggctgaactcctcccg 1461
>gb|AF377946.3| Oryza sativa (japonica cultivar-group) chromosome 3, BAC clone OSJNBa0031O09, complete sequence Length = 161339 Score = 91.7 bits (46), Expect = 2e-15 Identities = 70/78 (89%) Strand = Plus / Plus Query: 333 ggggagcgcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcgaa 392 |||||||||||| |||||||| ||||||||||||| ||||| || ||||||||||||| Sbjct: 89794 ggggagcgcgtcgagctcgtgcagcaccttctcgacgtcgagcacgaggcgctcggcgag 89853 Query: 393 ggtgcggctgaagtcctc 410 ||||||||||||||||| Sbjct: 89854 cgtgcggctgaagtcctc 89871 Score = 58.0 bits (29), Expect = 2e-05 Identities = 74/89 (83%) Strand = Plus / Plus Query: 197 agcagacgccctgggtcttcttcctggcggcgacggccctcttccagacggacaccacct 256 |||||||||| | |||||||||| |||| |||||||||||||||| ||| | ||||| Sbjct: 89661 agcagacgccgttggtcttcttcttggccagcacggccctcttccagagggagatcacct 89720 Query: 257 cgcgctgcctcgccaggtccttctcgctc 285 |||||||| || ||| ||| |||||||| Sbjct: 89721 cgcgctgcttctccatctccctctcgctc 89749
>gb|AC147426.2| Oryza sativa chromosome 3 B1377B10 genomic sequence, complete sequence Length = 184366 Score = 91.7 bits (46), Expect = 2e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 333 ggggagcgcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcgaa 392 |||||||||||| |||||||| ||||||||||||| ||||| || ||||||||||||| Sbjct: 97877 ggggagcgcgtcgagctcgtgcagcaccttctcgacgtcgagcacgaggcgctcggcgag 97818 Query: 393 ggtgcggctgaagtcctc 410 ||||||||||||||||| Sbjct: 97817 cgtgcggctgaagtcctc 97800 Score = 58.0 bits (29), Expect = 2e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 197 agcagacgccctgggtcttcttcctggcggcgacggccctcttccagacggacaccacct 256 |||||||||| | |||||||||| |||| |||||||||||||||| ||| | ||||| Sbjct: 98010 agcagacgccgttggtcttcttcttggccagcacggccctcttccagagggagatcacct 97951 Query: 257 cgcgctgcctcgccaggtccttctcgctc 285 |||||||| || ||| ||| |||||||| Sbjct: 97950 cgcgctgcttctccatctccctctcgctc 97922
>dbj|AK120961.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039L12, full insert sequence Length = 720 Score = 91.7 bits (46), Expect = 2e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 333 ggggagcgcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcgaa 392 |||||||||||| |||||||| ||||||||||||| ||||| || ||||||||||||| Sbjct: 256 ggggagcgcgtcgagctcgtgcagcaccttctcgacgtcgagcacgaggcgctcggcgag 197 Query: 393 ggtgcggctgaagtcctc 410 ||||||||||||||||| Sbjct: 196 cgtgcggctgaagtcctc 179 Score = 58.0 bits (29), Expect = 2e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 197 agcagacgccctgggtcttcttcctggcggcgacggccctcttccagacggacaccacct 256 |||||||||| | |||||||||| |||| |||||||||||||||| ||| | ||||| Sbjct: 389 agcagacgccgttggtcttcttcttggccagcacggccctcttccagagggagatcacct 330 Query: 257 cgcgctgcctcgccaggtccttctcgctc 285 |||||||| || ||| ||| |||||||| Sbjct: 329 cgcgctgcttctccatctccctctcgctc 301
>dbj|AK101171.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028M11, full insert sequence Length = 2064 Score = 91.7 bits (46), Expect = 2e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 333 ggggagcgcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcgaa 392 |||||||||||| |||||||| ||||||||||||| ||||| || ||||||||||||| Sbjct: 1645 ggggagcgcgtcgagctcgtgcagcaccttctcgacgtcgagcacgaggcgctcggcgag 1586 Query: 393 ggtgcggctgaagtcctc 410 ||||||||||||||||| Sbjct: 1585 cgtgcggctgaagtcctc 1568 Score = 65.9 bits (33), Expect = 1e-07 Identities = 76/89 (85%), Gaps = 1/89 (1%) Strand = Plus / Minus Query: 197 agcagacgccctgggtcttcttcctggcggcgacggccctcttccagacggacaccacct 256 |||||||||| | |||||||||| |||| || |||||||||||||||| ||| | ||||| Sbjct: 1777 agcagacgccgttggtcttcttcttggcagc-acggccctcttccagagggagatcacct 1719 Query: 257 cgcgctgcctcgccaggtccttctcgctc 285 |||||||| || ||| ||| |||||||| Sbjct: 1718 cgcgctgcttctccatctccctctcgctc 1690
>ref|XM_475239.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 684 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Minus Query: 331 gaggggagcgcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcg 390 |||||||||||||| |||| | | ||||||||||||||||| ||| |||||||||||| Sbjct: 365 gaggggagcgcgtcgagctggcacatcaccttctcgatgtcgaggacgaggcgctcggcg 306 Query: 391 aaggtgcggctgaagtcctcccg 413 | |||||||||||| |||||||| Sbjct: 305 agggtgcggctgaactcctcccg 283
>gb|AC124836.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092E21, complete sequence Length = 132649 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 331 gaggggagcgcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcg 390 |||||||||||||| |||| | | ||||||||||||||||| ||| |||||||||||| Sbjct: 83103 gaggggagcgcgtcgagctggcacatcaccttctcgatgtcgaggacgaggcgctcggcg 83162 Query: 391 aaggtgcggctgaagtcctcccg 413 | |||||||||||| |||||||| Sbjct: 83163 agggtgcggctgaactcctcccg 83185
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 331 gaggggagcgcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcg 390 |||||||||||||| |||| | | ||||||||||||||||| ||| |||||||||||| Sbjct: 20539624 gaggggagcgcgtcgagctggcacatcaccttctcgatgtcgaggacgaggcgctcggcg 20539683 Query: 391 aaggtgcggctgaagtcctcccg 413 | |||||||||||| |||||||| Sbjct: 20539684 agggtgcggctgaactcctcccg 20539706
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 67.9 bits (34), Expect = 2e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 357 caccttctcgatgtcgatgaccaggcgctcggcgaaggtgcggctgaagtcctc 410 ||||||||||||||||| ||| ||||||||||||| ||||||||||| ||||| Sbjct: 35454909 caccttctcgatgtcgaggacgaggcgctcggcgagagtgcggctgaactcctc 35454856
>dbj|AP003989.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1063_D06 Length = 102439 Score = 67.9 bits (34), Expect = 2e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 357 caccttctcgatgtcgatgaccaggcgctcggcgaaggtgcggctgaagtcctc 410 ||||||||||||||||| ||| ||||||||||||| ||||||||||| ||||| Sbjct: 66430 caccttctcgatgtcgaggacgaggcgctcggcgagagtgcggctgaactcctc 66377
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 358 accttctcgatgtcgatgaccaggcgctcggcgaaggtgcggctgaagtcctcccg 413 |||||||||||||||| ||| |||||||| |||| ||||||||||| |||||||| Sbjct: 25315033 accttctcgatgtcgaggacgaggcgctcagcgagagtgcggctgaactcctcccg 25314978
>dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0616D06 Length = 153800 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 358 accttctcgatgtcgatgaccaggcgctcggcgaaggtgcggctgaagtcctcccg 413 |||||||||||||||| ||| |||||||| |||| ||||||||||| |||||||| Sbjct: 131704 accttctcgatgtcgaggacgaggcgctcagcgagagtgcggctgaactcctcccg 131649
>dbj|AP004988.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1056G08 Length = 168173 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 358 accttctcgatgtcgatgaccaggcgctcggcgaaggtgcggctgaagtcctcccg 413 |||||||||||||||| ||| |||||||| |||| ||||||||||| |||||||| Sbjct: 8123 accttctcgatgtcgaggacgaggcgctcagcgagagtgcggctgaactcctcccg 8068
>emb|AJ417688.1|DRA417688 Deinococcus radiodurans smc gene Length = 3303 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 313 gacggcccgctgctgcgcgagg 334 |||||||||||||||||||||| Sbjct: 1660 gacggcccgctgctgcgcgagg 1681
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 313 gacggcccgctgctgcgcgagg 334 |||||||||||||||||||||| Sbjct: 1482343 gacggcccgctgctgcgcgagg 1482364
>ref|XM_482841.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1732 Score = 42.1 bits (21), Expect = 1.4 Identities = 60/73 (82%) Strand = Plus / Minus Query: 340 gcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcgaaggtgcgg 399 |||||||||||||| || | ||| ||||||| ||| || |||||||||| | | ||| Sbjct: 1444 gcgtccagctcgtgcaggatcttgacgatgtccgagacgagccgctcggcgaggctccgg 1385 Query: 400 ctgaagtcctccc 412 ||||||||||||| Sbjct: 1384 ctgaagtcctccc 1372
>ref|XM_507262.1| PREDICTED Oryza sativa (japonica cultivar-group), P0104B02.16-1 mRNA Length = 1978 Score = 42.1 bits (21), Expect = 1.4 Identities = 60/73 (82%) Strand = Plus / Minus Query: 340 gcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcgaaggtgcgg 399 |||||||||||||| || | ||| ||||||| ||| || |||||||||| | | ||| Sbjct: 1560 gcgtccagctcgtgcaggatcttgacgatgtccgagacgagccgctcggcgaggctccgg 1501 Query: 400 ctgaagtcctccc 412 ||||||||||||| Sbjct: 1500 ctgaagtcctccc 1488
>ref|XM_482840.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1506 Score = 42.1 bits (21), Expect = 1.4 Identities = 60/73 (82%) Strand = Plus / Minus Query: 340 gcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcgaaggtgcgg 399 |||||||||||||| || | ||| ||||||| ||| || |||||||||| | | ||| Sbjct: 1349 gcgtccagctcgtgcaggatcttgacgatgtccgagacgagccgctcggcgaggctccgg 1290 Query: 400 ctgaagtcctccc 412 ||||||||||||| Sbjct: 1289 ctgaagtcctccc 1277
>gb|AY428025.2| Oryza sativa glutamate decarboxylase (GAD) mRNA, complete cds Length = 1518 Score = 42.1 bits (21), Expect = 1.4 Identities = 60/73 (82%) Strand = Plus / Minus Query: 340 gcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcgaaggtgcgg 399 |||||||||||||| || | ||| ||||||| ||| || |||||||||| | | ||| Sbjct: 1284 gcgtccagctcgtgcaggatcttgacgatgtccgagacgagccgctcggcgaggctccgg 1225 Query: 400 ctgaagtcctccc 412 ||||||||||||| Sbjct: 1224 ctgaagtcctccc 1212
>ref|XM_813754.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053510643.10) partial mRNA Length = 10476 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 cgctgctgcgcgaggggagcg 340 ||||||||||||||||||||| Sbjct: 10262 cgctgctgcgcgaggggagcg 10282
>emb|AL035451.6|HS145B8 Human DNA sequence from clone RP6-145B8 on chromosome Xq21.2-22.3 Contains a thiopurine S-methyltransferase (TPMT) pseudogene, a stress-induced-phosphoprotein 1 (STIP1) pseudogene, a NADH dehydrogenase (ubiquinone) 1 alpha subcomplex (NDUFA5) pseudogene and the 5' end of the CHM gene for choroideremia (Rab escort protein 1), complete sequence Length = 115039 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 caagagaagcatagcataaaa 136 ||||||||||||||||||||| Sbjct: 33987 caagagaagcatagcataaaa 34007
>gb|AF358767.1| Oryza sativa clone Osl9 glutamate decarboxylase mRNA, partial cds Length = 906 Score = 42.1 bits (21), Expect = 1.4 Identities = 60/73 (82%) Strand = Plus / Minus Query: 340 gcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcgaaggtgcgg 399 |||||||||||||| || | ||| ||||||| ||| || |||||||||| | | ||| Sbjct: 692 gcgtccagctcgtgcaggatcttgacgatgtccgagacgagccgctcggcgaggctccgg 633 Query: 400 ctgaagtcctccc 412 ||||||||||||| Sbjct: 632 ctgaagtcctccc 620
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.4 Identities = 60/73 (82%) Strand = Plus / Plus Query: 340 gcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcgaaggtgcgg 399 |||||||||||||| || | ||| ||||||| ||| || |||||||||| | | ||| Sbjct: 22871910 gcgtccagctcgtgcaggatcttgacgatgtccgagacgagccgctcggcgaggctccgg 22871969 Query: 400 ctgaagtcctccc 412 ||||||||||||| Sbjct: 22871970 ctgaagtcctccc 22871982
>gb|AE004455.1| Pseudomonas aeruginosa PAO1, section 16 of 529 of the complete genome Length = 10882 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 377 ccaggcgctcggcgaaggtgcggctgaag 405 ||||||||||||||||| ||||| ||||| Sbjct: 3749 ccaggcgctcggcgaagctgcgggtgaag 3777
>dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0104B02 Length = 169588 Score = 42.1 bits (21), Expect = 1.4 Identities = 60/73 (82%) Strand = Plus / Plus Query: 340 gcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcgaaggtgcgg 399 |||||||||||||| || | ||| ||||||| ||| || |||||||||| | | ||| Sbjct: 45748 gcgtccagctcgtgcaggatcttgacgatgtccgagacgagccgctcggcgaggctccgg 45807 Query: 400 ctgaagtcctccc 412 ||||||||||||| Sbjct: 45808 ctgaagtcctccc 45820
>dbj|AK121088.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065G12, full insert sequence Length = 1978 Score = 42.1 bits (21), Expect = 1.4 Identities = 60/73 (82%) Strand = Plus / Minus Query: 340 gcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcgaaggtgcgg 399 |||||||||||||| || | ||| ||||||| ||| || |||||||||| | | ||| Sbjct: 1560 gcgtccagctcgtgcaggatcttgacgatgtccgagacgagccgctcggcgaggctccgg 1501 Query: 400 ctgaagtcctccc 412 ||||||||||||| Sbjct: 1500 ctgaagtcctccc 1488
>dbj|AK061977.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-A04, full insert sequence Length = 1732 Score = 42.1 bits (21), Expect = 1.4 Identities = 60/73 (82%) Strand = Plus / Minus Query: 340 gcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcgaaggtgcgg 399 |||||||||||||| || | ||| ||||||| ||| || |||||||||| | | ||| Sbjct: 1444 gcgtccagctcgtgcaggatcttgacgatgtccgagacgagccgctcggcgaggctccgg 1385 Query: 400 ctgaagtcctccc 412 ||||||||||||| Sbjct: 1384 ctgaagtcctccc 1372
>dbj|AB056062.1| Oryza sativa (japonica cultivar-group) GAD gene for glutamate decarboxylase, complete cds Length = 5701 Score = 42.1 bits (21), Expect = 1.4 Identities = 60/73 (82%) Strand = Plus / Minus Query: 340 gcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcgaaggtgcgg 399 |||||||||||||| || | ||| ||||||| ||| || |||||||||| | | ||| Sbjct: 5230 gcgtccagctcgtgcaggatcttgacgatgtccgagacgagccgctcggcgaggctccgg 5171 Query: 400 ctgaagtcctccc 412 ||||||||||||| Sbjct: 5170 ctgaagtcctccc 5158
>dbj|AB056060.1| Oryza sativa (japonica cultivar-group) GAD mRNA for glutamate decarboxylase, complete cds, clone:OsGAD1 Length = 1779 Score = 42.1 bits (21), Expect = 1.4 Identities = 60/73 (82%) Strand = Plus / Minus Query: 340 gcgtccagctcgtggagcaccttctcgatgtcgatgaccaggcgctcggcgaaggtgcgg 399 |||||||||||||| || | ||| ||||||| ||| || |||||||||| | | ||| Sbjct: 1472 gcgtccagctcgtgcaggatcttgacgatgtccgagacgagccgctcggcgaggctccgg 1413 Query: 400 ctgaagtcctccc 412 ||||||||||||| Sbjct: 1412 ctgaagtcctccc 1400
>gb|AC154043.1| Drosophila melanogaster clone BACR39O11, complete sequence Length = 182468 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 245 cggacaccacctcgcgctgcctcgccag 272 ||||||||||||||||||| | |||||| Sbjct: 40025 cggacaccacctcgcgctgtcccgccag 39998
>ref|NM_104543.2| Arabidopsis thaliana carboxylic ester hydrolase/ hydrolase, acting on ester bonds AT1G56670 mRNA, complete cds Length = 1207 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 aaattattacggaaataaaa 153 |||||||||||||||||||| Sbjct: 596 aaattattacggaaataaaa 615
>ref|XM_462650.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1455 Score = 40.1 bits (20), Expect = 5.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 379 aggcgctcggcgaaggtgcggctgaagtcctc 410 ||||||||||||| | ||||||||||||||| Sbjct: 1295 aggcgctcggcgaggccgcggctgaagtcctc 1264
>ref|XM_715656.1| Candida albicans SC5314 hypothetical protein (CaO19_11790), mRNA Length = 2289 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ataaaattattacggaaata 150 |||||||||||||||||||| Sbjct: 595 ataaaattattacggaaata 614
>ref|XM_715529.1| Candida albicans SC5314 hypothetical protein (CaO19_4315), mRNA Length = 2283 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ataaaattattacggaaata 150 |||||||||||||||||||| Sbjct: 586 ataaaattattacggaaata 605
>ref|XM_536927.2| PREDICTED: Canis familiaris similar to K04F10.2 (LOC479799), mRNA Length = 5066 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 gatgtcgatgaccaggcgct 385 |||||||||||||||||||| Sbjct: 2883 gatgtcgatgaccaggcgct 2864
>emb|AL391417.7| Human DNA sequence from clone RP11-15J23 on chromosome 6 Contains a novel pseudogene, complete sequence Length = 91355 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 aagagaagcatagcataaaa 136 |||||||||||||||||||| Sbjct: 6130 aagagaagcatagcataaaa 6111
>gb|AY071355.1| Drosophila melanogaster RE39037 full insert cDNA Length = 2561 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 245 cggacaccacctcgcgctgcctcgccag 272 ||||||||||||||||||| | |||||| Sbjct: 478 cggacaccacctcgcgctgtcccgccag 451
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 364 tcgatgtcgatgaccaggcgctcggcga 391 |||||||||||| |||||||| |||||| Sbjct: 583860 tcgatgtcgatgcccaggcgcccggcga 583833
>emb|Y14687.1|RSY14687 Rhodobacter sphaeroides fliC gene Length = 2026 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 gctcaccgtgtcgcccttgg 301 |||||||||||||||||||| Sbjct: 993 gctcaccgtgtcgcccttgg 974
>emb|BX572606.1| Rhodopseudomonas palustris CGA009 complete genome; segment 14/16 Length = 349841 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 cgatgtcgatgaccaggcgc 384 |||||||||||||||||||| Sbjct: 138049 cgatgtcgatgaccaggcgc 138030
>emb|AL049862.1|ATF18B3 Arabidopsis thaliana DNA chromosome 3, BAC clone F18B3 Length = 89469 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 gttgttcaacacatacatgaaaat 50 |||| ||||||||||||||||||| Sbjct: 55901 gttgatcaacacatacatgaaaat 55878
>gb|AC093689.4| Homo sapiens BAC clone RP11-725M22 from 4, complete sequence Length = 167590 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tatgcaagtactttactgtt 29 |||||||||||||||||||| Sbjct: 16164 tatgcaagtactttactgtt 16183
>ref|NM_139636.2| Drosophila melanogaster Cip4 CG15015-RA (Cip4), mRNA Length = 2539 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 245 cggacaccacctcgcgctgcctcgccag 272 ||||||||||||||||||| | |||||| Sbjct: 478 cggacaccacctcgcgctgtcccgccag 451
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 379 aggcgctcggcgaaggtgcggctgaagtcctc 410 ||||||||||||| | ||||||||||||||| Sbjct: 22289238 aggcgctcggcgaggccgcggctgaagtcctc 22289269
>emb|BX813398.1|CNS0AC29 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB15ZC05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1207 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 aaattattacggaaataaaa 153 |||||||||||||||||||| Sbjct: 596 aaattattacggaaataaaa 615
>gb|AC093771.3| Homo sapiens BAC clone RP11-121I23 from 4, complete sequence Length = 165420 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tatgcaagtactttactgtt 29 |||||||||||||||||||| Sbjct: 63219 tatgcaagtactttactgtt 63238
>emb|BX841928.1|CNS09Y4F Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL47ZA02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1146 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 aaattattacggaaataaaa 153 |||||||||||||||||||| Sbjct: 596 aaattattacggaaataaaa 615
>gb|AC009323.4|AC009323 Arabidopsis thaliana chromosome I BAC F25P12 genomic sequence, complete sequence Length = 141748 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 aaattattacggaaataaaa 153 |||||||||||||||||||| Sbjct: 74065 aaattattacggaaataaaa 74046
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 gcgaggggagcgcgtccagc 348 |||||||||||||||||||| Sbjct: 4831282 gcgaggggagcgcgtccagc 4831263
>dbj|AK070858.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023068K15, full insert sequence Length = 1917 Score = 40.1 bits (20), Expect = 5.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 379 aggcgctcggcgaaggtgcggctgaagtcctc 410 ||||||||||||| | ||||||||||||||| Sbjct: 1411 aggcgctcggcgaggccgcggctgaagtcctc 1380
>gb|AC024558.21| Homo sapiens 3 BAC RP11-390G14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 216161 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 cttccagacggacaccacct 256 |||||||||||||||||||| Sbjct: 82374 cttccagacggacaccacct 82393
>gb|AE003481.3| Drosophila melanogaster chromosome 3L, section 15 of 83 of the complete sequence Length = 315988 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 245 cggacaccacctcgcgctgcctcgccag 272 ||||||||||||||||||| | |||||| Sbjct: 20090 cggacaccacctcgcgctgtcccgccag 20117
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 aaattattacggaaataaaa 153 |||||||||||||||||||| Sbjct: 1279630 aaattattacggaaataaaa 1279611 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 cggcccgctgctgcgcgagg 334 |||||||||||||||||||| Sbjct: 719249 cggcccgctgctgcgcgagg 719268
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence Length = 147214 Score = 40.1 bits (20), Expect = 5.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 379 aggcgctcggcgaaggtgcggctgaagtcctc 410 ||||||||||||| | ||||||||||||||| Sbjct: 40140 aggcgctcggcgaggccgcggctgaagtcctc 40171 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,343,733 Number of Sequences: 3902068 Number of extensions: 3343733 Number of successful extensions: 68914 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 68283 Number of HSP's gapped (non-prelim): 628 length of query: 413 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 391 effective length of database: 17,147,199,772 effective search space: 6704555110852 effective search space used: 6704555110852 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
