ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart26e01 |
|---|---|
| Clone Library Name | barley_pub |
>TRXB2_ARATH (Q39242) Thioredoxin reductase 2 (EC 1.8.1.9) (NADPH-dependent| thioredoxin reductase 2) (NTR 2) Length = 383 Score = 56.2 bits (134), Expect = 5e-08 Identities = 25/29 (86%), Positives = 28/29 (96%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQEVGAQVGKSD 403 ITAAG+GCMAALDAEHYLQE+G+Q GKSD Sbjct: 355 ITAAGTGCMAALDAEHYLQEIGSQEGKSD 383
>TRXB1_ARATH (Q39243) Thioredoxin reductase 1 (EC 1.8.1.9) (NADPH-dependent| thioredoxin reductase 1) (NTR 1) Length = 333 Score = 56.2 bits (134), Expect = 5e-08 Identities = 25/29 (86%), Positives = 28/29 (96%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQEVGAQVGKSD 403 ITAAG+GCMAALDAEHYLQE+G+Q GKSD Sbjct: 305 ITAAGTGCMAALDAEHYLQEIGSQQGKSD 333
>TRXB_KLULA (Q6HA24) Thioredoxin reductase, mitochondrial precursor (EC| 1.8.1.9) Length = 349 Score = 37.0 bits (84), Expect = 0.028 Identities = 16/21 (76%), Positives = 19/21 (90%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQEV 427 IT+AGSGCMAALDAE Y+ E+ Sbjct: 328 ITSAGSGCMAALDAEKYITEL 348
>TRXB_VIBCH (Q9KSS4) Thioredoxin reductase (EC 1.8.1.9) (TRXR)| Length = 318 Score = 36.6 bits (83), Expect = 0.037 Identities = 16/22 (72%), Positives = 18/22 (81%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQEVG 424 IT+AG+GCMAALDAE YL G Sbjct: 296 ITSAGTGCMAALDAERYLDSQG 317
>TRXB_CANGA (Q6FR39) Thioredoxin reductase (EC 1.8.1.9)| Length = 319 Score = 36.2 bits (82), Expect = 0.048 Identities = 16/21 (76%), Positives = 18/21 (85%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQEV 427 IT+AGSGCMA LDAE YL E+ Sbjct: 298 ITSAGSGCMAGLDAEKYLTEL 318
>TRXB_ASHGO (Q75CM8) Thioredoxin reductase (EC 1.8.1.9)| Length = 319 Score = 36.2 bits (82), Expect = 0.048 Identities = 15/21 (71%), Positives = 19/21 (90%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQEV 427 +T+AGSGCMAALDAE +L E+ Sbjct: 298 VTSAGSGCMAALDAEKFLSEL 318
>TRXB_CHLMU (Q9PKT7) Thioredoxin reductase (EC 1.8.1.9) (TRXR)| Length = 312 Score = 35.8 bits (81), Expect = 0.063 Identities = 15/20 (75%), Positives = 19/20 (95%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQE 430 IT+AGSGCMAALDAE +L++ Sbjct: 293 ITSAGSGCMAALDAERFLEK 312
>TRXB1_YEAST (P29509) Thioredoxin reductase 1 (EC 1.8.1.9)| Length = 318 Score = 35.8 bits (81), Expect = 0.063 Identities = 16/18 (88%), Positives = 17/18 (94%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYL 436 IT+AGSGCMAALDAE YL Sbjct: 297 ITSAGSGCMAALDAEKYL 314
>TRXB_COXBU (P39916) Thioredoxin reductase (EC 1.8.1.9) (TRXR)| Length = 320 Score = 35.8 bits (81), Expect = 0.063 Identities = 16/21 (76%), Positives = 17/21 (80%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQEV 427 ITAAG GCMAALDAE YL + Sbjct: 297 ITAAGMGCMAALDAERYLDSL 317
>TRXB_CHLTR (O84101) Thioredoxin reductase (EC 1.8.1.9) (TRXR)| Length = 312 Score = 35.4 bits (80), Expect = 0.082 Identities = 15/19 (78%), Positives = 18/19 (94%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQ 433 IT+AGSGCMAALDAE +L+ Sbjct: 293 ITSAGSGCMAALDAERFLE 311
>TRXB_HAEIN (P43788) Thioredoxin reductase (EC 1.8.1.9) (TRXR)| Length = 318 Score = 35.0 bits (79), Expect = 0.11 Identities = 15/18 (83%), Positives = 17/18 (94%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYL 436 IT+AG+GCMAALDAE YL Sbjct: 296 ITSAGTGCMAALDAERYL 313
>TRXB_ECOLI (P0A9P4) Thioredoxin reductase (EC 1.8.1.9) (TRXR)| Length = 320 Score = 35.0 bits (79), Expect = 0.11 Identities = 15/18 (83%), Positives = 17/18 (94%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYL 436 IT+AG+GCMAALDAE YL Sbjct: 296 ITSAGTGCMAALDAERYL 313
>TRXB_ECO57 (P0A9P5) Thioredoxin reductase (EC 1.8.1.9) (TRXR)| Length = 320 Score = 35.0 bits (79), Expect = 0.11 Identities = 15/18 (83%), Positives = 17/18 (94%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYL 436 IT+AG+GCMAALDAE YL Sbjct: 296 ITSAGTGCMAALDAERYL 313
>TRXB_NEUCR (P51978) Thioredoxin reductase (EC 1.8.1.9)| Length = 334 Score = 35.0 bits (79), Expect = 0.11 Identities = 15/20 (75%), Positives = 18/20 (90%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQE 430 IT+AG+GCMAALDAE +L E Sbjct: 297 ITSAGTGCMAALDAEKFLSE 316
>TRXB_MYCTU (P52214) Thioredoxin reductase (EC 1.8.1.9) (TRXR) (TR)| Length = 335 Score = 34.7 bits (78), Expect = 0.14 Identities = 17/29 (58%), Positives = 22/29 (75%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQEVGAQVGKSD 403 +TAAGSGC AA+DAE +L E A G++D Sbjct: 298 VTAAGSGCAAAIDAERWLAE-HAATGEAD 325
>TRXB2_YEAST (P38816) Thioredoxin reductase 2, mitochondrial precursor (EC| 1.8.1.9) Length = 342 Score = 34.3 bits (77), Expect = 0.18 Identities = 14/18 (77%), Positives = 17/18 (94%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYL 436 +T+AGSGC+AALDAE YL Sbjct: 321 VTSAGSGCIAALDAERYL 338
>TRXB_STRCL (Q05741) Thioredoxin reductase (EC 1.8.1.9) (TRXR)| Length = 321 Score = 33.9 bits (76), Expect = 0.24 Identities = 15/18 (83%), Positives = 16/18 (88%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYL 436 ITAAG+GC AALDAE YL Sbjct: 288 ITAAGTGCSAALDAERYL 305
>TRXB_DEBHA (Q6BIS1) Thioredoxin reductase (EC 1.8.1.9)| Length = 321 Score = 33.9 bits (76), Expect = 0.24 Identities = 15/24 (62%), Positives = 19/24 (79%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQEVGAQ 418 IT+AG+GCMAALD E +L E A+ Sbjct: 298 ITSAGTGCMAALDCEKFLSEEEAK 321
>TRXB_MYCLE (P46843) Bifunctional thioredoxin reductase/thioredoxin [Includes:| Thioredoxin reductase (EC 1.8.1.9) (TRXR); Thioredoxin] Length = 458 Score = 33.9 bits (76), Expect = 0.24 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQE 430 ITAAGSGC AA+DAE +L E Sbjct: 295 ITAAGSGCAAAIDAERWLAE 314
>TRXB_SCHPO (Q92375) Thioredoxin reductase (EC 1.8.1.9) (Caffeine resistance| protein 4) Length = 322 Score = 33.9 bits (76), Expect = 0.24 Identities = 15/21 (71%), Positives = 18/21 (85%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQEV 427 IT+AGSGC AAL A HYL+E+ Sbjct: 298 ITSAGSGCQAALLAMHYLEEL 318
>TRXB_MYCSM (O30973) Thioredoxin reductase (EC 1.8.1.9) (TRXR)| Length = 311 Score = 32.7 bits (73), Expect = 0.53 Identities = 14/20 (70%), Positives = 17/20 (85%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQE 430 ITAAGSGC A++DAE +L E Sbjct: 290 ITAAGSGCAASIDAERWLAE 309
>TRXB_CHLPN (Q9Z8M4) Thioredoxin reductase (EC 1.8.1.9) (TRXR)| Length = 311 Score = 32.7 bits (73), Expect = 0.53 Identities = 13/18 (72%), Positives = 17/18 (94%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYL 436 +T+AGSGC+AALDAE +L Sbjct: 293 VTSAGSGCIAALDAERFL 310
>TRXB_RICCN (Q92I02) Thioredoxin reductase (EC 1.8.1.9) (TRXR)| Length = 310 Score = 32.7 bits (73), Expect = 0.53 Identities = 13/20 (65%), Positives = 18/20 (90%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQE 430 +TAAG+GCMAAL+AE +L + Sbjct: 291 VTAAGTGCMAALEAEKFLNK 310
>TRXB_BUCBP (Q89AJ2) Thioredoxin reductase (EC 1.8.1.9) (TRXR)| Length = 326 Score = 32.3 bits (72), Expect = 0.70 Identities = 13/20 (65%), Positives = 17/20 (85%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQE 430 IT++ SGCMAALDAE Y+ + Sbjct: 301 ITSSASGCMAALDAEKYIDQ 320
>TRXB_BUCAP (P81433) Thioredoxin reductase (EC 1.8.1.9) (TRXR)| Length = 319 Score = 32.0 bits (71), Expect = 0.91 Identities = 13/21 (61%), Positives = 17/21 (80%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQEV 427 IT++ SGCMAALD+E YL + Sbjct: 298 ITSSASGCMAALDSERYLNSL 318
>TRXB_PENCH (P43496) Thioredoxin reductase (EC 1.8.1.9)| Length = 333 Score = 32.0 bits (71), Expect = 0.91 Identities = 13/20 (65%), Positives = 18/20 (90%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQE 430 IT+AGSGC+AAL+AE ++ E Sbjct: 303 ITSAGSGCVAALEAEKFIAE 322
>TRXB_SPIBA (Q8T6Z1) Thioredoxin reductase (EC 1.8.1.9) (L-TrxR) (Fragment)| Length = 305 Score = 32.0 bits (71), Expect = 0.91 Identities = 15/22 (68%), Positives = 16/22 (72%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQEVG 424 I AAGSGC AALDAE +L G Sbjct: 282 IVAAGSGCKAALDAERWLASNG 303
>TRXB_YARLI (Q6C7L4) Thioredoxin reductase (EC 1.8.1.9)| Length = 319 Score = 31.6 bits (70), Expect = 1.2 Identities = 14/20 (70%), Positives = 16/20 (80%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQE 430 IT+AG+GCMAALD E L E Sbjct: 298 ITSAGTGCMAALDCEKLLAE 317
>GIDA_BUCAI (P57117) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 628 Score = 31.2 bits (69), Expect = 1.6 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Frame = -1 Query: 339 GWLSNSSTVSXCGEPH--SELDEVGCPILQLFHYAALQHRIILLSLGPR*TSIGAGNDSY 166 G LS + + G+ H E+D +G + + Y+ +Q RI+ S GP S A D Sbjct: 43 GALSCNPAIGGIGKSHLVKEIDALGGMMAKAIDYSGIQFRILNSSKGPAVRSTRAQADKI 102 Query: 165 LSLVELKLILMYHWGNHIIIL 103 L +K IL N+++IL Sbjct: 103 LYHETVKKILKKQ--NNLLIL 121
>TRXB_BUCAI (P57399) Thioredoxin reductase (EC 1.8.1.9) (TRXR)| Length = 319 Score = 31.2 bits (69), Expect = 1.6 Identities = 12/21 (57%), Positives = 17/21 (80%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQEV 427 IT++ SGCMAALD+E Y+ + Sbjct: 298 ITSSASGCMAALDSERYINSL 318
>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.8 bits (68), Expect = 2.0 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Frame = +2 Query: 275 TSSSSECGSPXNETVEELDNQPHQAQSAAFGELMTVA*PEXSQSDLPTCA---PTSCR*C 445 +SSSS S +E EE +P +Q+AA + S D P P SCR Sbjct: 208 SSSSSSDDSDSDEGGEEETPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267 Query: 446 SASKAAMQPDPAA 484 +AS A P PA+ Sbjct: 268 AASPGAPAPAPAS 280
>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.8 bits (68), Expect = 2.0 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Frame = +2 Query: 275 TSSSSECGSPXNETVEELDNQPHQAQSAAFGELMTVA*PEXSQSDLPTCA---PTSCR*C 445 +SSSS S +E EE +P +Q+AA + S D P P SCR Sbjct: 208 SSSSSSDDSDSDEGGEEETPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267 Query: 446 SASKAAMQPDPAA 484 +AS A P PA+ Sbjct: 268 AASPGAPAPAPAS 280
>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.8 bits (68), Expect = 2.0 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Frame = +2 Query: 275 TSSSSECGSPXNETVEELDNQPHQAQSAAFGELMTVA*PEXSQSDLPTCA---PTSCR*C 445 +SSSS S +E EE +P +Q+AA + S D P P SCR Sbjct: 208 SSSSSSDDSDSDEGGEEETPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267 Query: 446 SASKAAMQPDPAA 484 +AS A P PA+ Sbjct: 268 AASPGAPAPAPAS 280
>TRXB_STRCO (P52215) Thioredoxin reductase (EC 1.8.1.9) (TRXR)| Length = 321 Score = 30.4 bits (67), Expect = 2.7 Identities = 13/18 (72%), Positives = 16/18 (88%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYL 436 ITAAG+GC AA+DAE +L Sbjct: 288 ITAAGTGCSAAVDAEPFL 305
>TRXB_PNEJI (Q8J0U0) Thioredoxin reductase (EC 1.8.1.9)| Length = 327 Score = 29.6 bits (65), Expect = 4.5 Identities = 13/20 (65%), Positives = 15/20 (75%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQE 430 +T+AGSGCMA L AE L E Sbjct: 296 VTSAGSGCMAGLAAERLLAE 315
>TRXB_PNECA (Q7Z7S3) Thioredoxin reductase (EC 1.8.1.9)| Length = 325 Score = 29.6 bits (65), Expect = 4.5 Identities = 13/20 (65%), Positives = 15/20 (75%) Frame = -1 Query: 489 ITAAGSGCMAALDAEHYLQE 430 +T+AGSGCMA L AE L E Sbjct: 296 VTSAGSGCMAGLAAERLLAE 315
>TBC10_HUMAN (Q9BXI6) TBC1 domain family member 10A (EBP50-PDX interactor of 64| kDa) (EPI64 protein) Length = 508 Score = 29.6 bits (65), Expect = 4.5 Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 4/73 (5%) Frame = +3 Query: 276 PHQAQSAARRXMKQLKNWTTNLIKLRVRLSAS**PSLDQXRV----NQTCPPVHPPPADS 443 P QAQ R+ MK R +L P+ +Q V CPP H PP DS Sbjct: 428 PKQAQKEQRKQMKG-----------RGQLEKP--PAPNQAMVVAAAGDACPPQHVPPKDS 474 Query: 444 ARRPKQPCNLIQQ 482 A + P +L Q Sbjct: 475 APKDSAPQDLAPQ 487
>YKD0_YEAST (P36099) Hypothetical 23.0 kDa protein in IXR1-TFA1 intergenic| region Length = 201 Score = 29.3 bits (64), Expect = 5.9 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = -3 Query: 112 YYSEISVLLHQKYMFLYFSMFGVRTCLFFLR 20 YY I +LL+ Y + Y+ +G+ + +FFL+ Sbjct: 13 YYCIIVLLLYYYYYYYYYYYYGMSSIIFFLK 43
>TTLL4_HUMAN (Q14679) Tubulin--tyrosine ligase-like protein 4| Length = 1199 Score = 29.3 bits (64), Expect = 5.9 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 13/49 (26%) Frame = -2 Query: 449 PSTICRR-------------WVHRWASLIDSXLVKRRSSARRKPHSELD 342 PST+C ++H L +S L+ RRSS R+KP+ +L+ Sbjct: 84 PSTLCSSGTTAVIAGHSSSCYLHSLPDLFNSTLLYRRSSYRQKPYQQLE 132
>CI007_HUMAN (Q9UGQ2) Protein C9orf7| Length = 172 Score = 28.9 bits (63), Expect = 7.7 Identities = 22/72 (30%), Positives = 29/72 (40%) Frame = -2 Query: 347 LDEVGCPILQLFHXAASRTLSLMRLVVQFFNCFIMLLCSTALFSCH*ALDELPLVLEMIH 168 L V C I LF+ L++ V N FI+LLC A F C ++ V E + Sbjct: 37 LGAVSCAISGLFNCITIHPLNIAAGVWMIMNAFILLLCE-APFCCQ-FIEFANTVAEKVD 94 Query: 167 IYHWWNSN*FLC 132 W F C Sbjct: 95 RLRSWQKAVFYC 106
>CI007_MOUSE (Q8BG21) Protein C9orf7 homolog| Length = 171 Score = 28.9 bits (63), Expect = 7.7 Identities = 22/72 (30%), Positives = 29/72 (40%) Frame = -2 Query: 347 LDEVGCPILQLFHXAASRTLSLMRLVVQFFNCFIMLLCSTALFSCH*ALDELPLVLEMIH 168 L V C I LF+ L++ V N FI+LLC A F C ++ V E + Sbjct: 36 LGAVSCAISGLFNCVTIHPLNIAAGVWMIMNAFILLLCE-APFCCQ-FVEFANTVAEKVD 93 Query: 167 IYHWWNSN*FLC 132 W F C Sbjct: 94 RLRSWQKAVFYC 105 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,845,937 Number of Sequences: 219361 Number of extensions: 1392659 Number of successful extensions: 4150 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 3888 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4135 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
