ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart26e01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467446.1| Oryza sativa (japonica cultivar-group), mRNA 127 4e-26
2ref|XM_506936.1| PREDICTED Oryza sativa (japonica cultivar-group... 127 4e-26
3dbj|AK104317.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 4e-26
4dbj|AK071251.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 4e-26
5gb|AY104846.1| Zea mays PCO061833 mRNA sequence 111 2e-21
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
7dbj|AP004165.3| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
8emb|AJ421947.1|TAE421947 Triticum aestivum mRNA for NADPH-thiore... 96 1e-16
9gb|AY105128.1| Zea mays PCO155238 mRNA sequence 90 8e-15
10dbj|AK106368.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 5e-07
11ref|NM_129731.3| Arabidopsis thaliana disulfide oxidoreductase/ ... 50 0.007
12gb|BT000516.1| Arabidopsis thaliana putative thioredoxin reducta... 50 0.007
13gb|AY093250.1| Arabidopsis thaliana putative thioredoxin reducta... 50 0.007
14gb|AC002510.3| Arabidopsis thaliana chromosome 2 clone T32G6 map... 50 0.007
15gb|AY062479.1| Arabidopsis thaliana putative thioredoxin reducta... 50 0.007
16gb|AY056394.1| Arabidopsis thaliana At2g41680/T32G6.20 mRNA, com... 50 0.007
17emb|BX821094.1|CNS0A9Z3 Arabidopsis thaliana Full-length cDNA Co... 50 0.007
18emb|BX820757.1|CNS0A9JK Arabidopsis thaliana Full-length cDNA Co... 50 0.007
19emb|BX819883.1|CNS0A9GU Arabidopsis thaliana Full-length cDNA Co... 50 0.007
20emb|BX820128.1|CNS0A9G2 Arabidopsis thaliana Full-length cDNA Co... 50 0.007
21emb|BX248585.1| Blochmannia floridanus complete genome; segment 2/3 48 0.027
22dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.027
23dbj|AP005477.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.027
24gb|CP000016.1| Candidatus Blochmannia pennsylvanicus str. BPEN, ... 48 0.027
25gb|AC091230.23| Homo sapiens chromosome 15, clone RP11-414J4, co... 46 0.11
26gb|AC102274.20| Mus musculus chromosome 3, clone RP24-286L19, co... 44 0.42
27emb|CR543861.1| Acinetobacter sp. ADP1 complete genome 44 0.42
28gb|AC162300.3| Mus musculus chromosome 3, clone RP23-224F23, com... 44 0.42
29emb|AL672056.4| Mouse DNA sequence from clone RP23-467O2 on chro... 44 0.42
30gb|AC117787.8| Mus musculus chromosome 1, clone RP24-546N2, comp... 42 1.7
31gb|AY504728.1| Barnadesia caryophylla NADH dehydrogenase (ndhF) ... 42 1.7
32gb|AY504727.1| Dasyphyllum reticulatum NADH dehydrogenase (ndhF)... 42 1.7
33gb|AC115860.9| Mus musculus chromosome 1, clone RP24-290C11, com... 42 1.7
34gb|AC116404.12| Mus musculus chromosome 5, clone RP23-143M9, com... 42 1.7
35gb|AC121878.1| Mus musculus BAC clone RP24-131C8 from 5, complet... 42 1.7
36dbj|AP000942.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 1.7
37dbj|AP002777.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 1.7
38gb|AC109143.19| Mus musculus chromosome 1, clone RP23-105D15, co... 42 1.7
39gb|L39392.1|DPUCPNDHF Dasyphyllum argenteum chloroplast NADH deh... 42 1.7
40gb|L39396.1|DOICPNDHF Doniophyton anomalum chloroplast NADH dehy... 42 1.7
41gb|L39393.1|CQRCPNDHF Chuquiraga jussieui chloroplast NADH dehyd... 42 1.7
42gb|L39394.1|BRICPNDHF Barnadesia caryophylla chloroplast NADH de... 42 1.7
43gb|AC090121.37| Mus musculus strain C57BL/6J chromosome 16 clone... 42 1.7
44gb|AY728222.1| Plethodon petraeus mitochondrion, complete genome 40 6.6
45gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 6.6
46gb|AC007558.3| Homo sapiens BAC clone RP11-148A10 from 7, comple... 40 6.6
47gb|AC159873.11| Medicago truncatula clone mth2-46p15, complete s... 40 6.6
48gb|AC125475.11| Medicago truncatula clone mth2-5j2, complete seq... 40 6.6
49gb|AY029520.1| Fiji disease virus RNA-dependent RNA polymerase g... 40 6.6
50gb|AC100729.21| Mus musculus chromosome 19, clone RP24-286E16, c... 40 6.6
51emb|AL512635.8| Human DNA sequence from clone RP11-15P13 on chro... 40 6.6
52emb|AL353629.22| Human DNA sequence from clone RP11-30L4 on chro... 40 6.6
53gb|AC157550.3| Mus musculus chromosome 15, clone RP24-263A11, co... 40 6.6
54gb|AC158149.3| Mus musculus chromosome 5, clone RP24-296L6, comp... 40 6.6
55emb|CR762445.5| Zebrafish DNA sequence from clone DKEY-11C9 in l... 40 6.6
56dbj|AK126368.1| Homo sapiens cDNA FLJ44404 fis, clone TUTER2001387 40 6.6
57dbj|AK158687.1| Mus musculus visual cortex cDNA, RIKEN full-leng... 40 6.6
58emb|BX255951.13| Zebrafish DNA sequence from clone DKEYP-31E5 in... 40 6.6
59gb|AC002050.8| Homo sapiens Chromosome 9p22 Cosmid Clone 213a7, ... 40 6.6
60gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 6.6
61dbj|AP001724.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 6.6
62dbj|BS000201.1| Pan troglodytes chromosome 22 clone:PTB-047A24, ... 40 6.6
63gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 6.6
64gb|AC021008.10| Mus musculus chromosome 15, clone RP23-59C1, com... 40 6.6
65gb|AC111039.13| Mus musculus chromosome 5, clone RP24-463M5, com... 40 6.6
66gb|AC100745.8| Mus musculus chromosome 15, clone RP24-372F6, com... 40 6.6
67gb|U91640.1|HSU91640 Human survival motor neuron pseudogene 40 6.6
68gb|AC122329.4| Mus musculus BAC clone RP23-341A12 from 19, compl... 40 6.6
69dbj|AP000688.1| Homo sapiens genomic DNA, chromosome 21q22.2, PA... 40 6.6
70dbj|AB003151.1| Homo sapiens DNA, chromosome 21q22.2, PAC clone ... 40 6.6
71dbj|AP005204.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 6.6
72emb|AL513498.2|HS336O12 Homo sapiens chromosome 9 BAC RP11-336O1... 40 6.6 
>ref|XM_467446.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1389

 Score =  127 bits (64), Expect = 4e-26
 Identities = 85/92 (92%)
 Strand = Plus / Minus

                                                                        
Query: 398  agtcaatcagacttgcccacctgtgcacccacctcctgcagatagtgctcggcgtccaaa 457
            |||||||| | ||||||| |||||||||| |||||||||||||||||||| |||||||||
Sbjct: 1105 agtcaatcggccttgccctcctgtgcaccgacctcctgcagatagtgctccgcgtccaaa 1046

                                            
Query: 458  gcagccatgcaacctgatccagcagcagtaat 489
            ||||||||||| ||||||||||| ||||||||
Sbjct: 1045 gcagccatgcaccctgatccagcggcagtaat 1014
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>ref|XM_506936.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1479_B12.9 mRNA
          Length = 1503

 Score =  127 bits (64), Expect = 4e-26
 Identities = 85/92 (92%)
 Strand = Plus / Minus

                                                                        
Query: 398  agtcaatcagacttgcccacctgtgcacccacctcctgcagatagtgctcggcgtccaaa 457
            |||||||| | ||||||| |||||||||| |||||||||||||||||||| |||||||||
Sbjct: 1122 agtcaatcggccttgccctcctgtgcaccgacctcctgcagatagtgctccgcgtccaaa 1063

                                            
Query: 458  gcagccatgcaacctgatccagcagcagtaat 489
            ||||||||||| ||||||||||| ||||||||
Sbjct: 1062 gcagccatgcaccctgatccagcggcagtaat 1031
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>dbj|AK104317.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-C03, full
            insert sequence
          Length = 1389

 Score =  127 bits (64), Expect = 4e-26
 Identities = 85/92 (92%)
 Strand = Plus / Minus

                                                                        
Query: 398  agtcaatcagacttgcccacctgtgcacccacctcctgcagatagtgctcggcgtccaaa 457
            |||||||| | ||||||| |||||||||| |||||||||||||||||||| |||||||||
Sbjct: 1105 agtcaatcggccttgccctcctgtgcaccgacctcctgcagatagtgctccgcgtccaaa 1046

                                            
Query: 458  gcagccatgcaacctgatccagcagcagtaat 489
            ||||||||||| ||||||||||| ||||||||
Sbjct: 1045 gcagccatgcaccctgatccagcggcagtaat 1014
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>dbj|AK071251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087H21, full
            insert sequence
          Length = 1502

 Score =  127 bits (64), Expect = 4e-26
 Identities = 85/92 (92%)
 Strand = Plus / Minus

                                                                        
Query: 398  agtcaatcagacttgcccacctgtgcacccacctcctgcagatagtgctcggcgtccaaa 457
            |||||||| | ||||||| |||||||||| |||||||||||||||||||| |||||||||
Sbjct: 1121 agtcaatcggccttgccctcctgtgcaccgacctcctgcagatagtgctccgcgtccaaa 1062

                                            
Query: 458  gcagccatgcaacctgatccagcagcagtaat 489
            ||||||||||| ||||||||||| ||||||||
Sbjct: 1061 gcagccatgcaccctgatccagcggcagtaat 1030
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>gb|AY104846.1| Zea mays PCO061833 mRNA sequence
          Length = 1380

 Score =  111 bits (56), Expect = 2e-21
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                        
Query: 398  agtcaatcagacttgcccacctgtgcacccacctcctgcagatagtgctcggcgtccaaa 457
            |||||||||||||| ||| |||||||||| | ||||||||| |||||||| |||||||| 
Sbjct: 1120 agtcaatcagactttccctcctgtgcaccgatctcctgcaggtagtgctcagcgtccaat 1061

                                            
Query: 458  gcagccatgcaacctgatccagcagcagtaat 489
            ||||||||||| ||||||||||| ||||||||
Sbjct: 1060 gcagccatgcaccctgatccagcggcagtaat 1029
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  103 bits (52), Expect = 5e-19
 Identities = 70/76 (92%)
 Strand = Plus / Minus

                                                                            
Query: 398      agtcaatcagacttgcccacctgtgcacccacctcctgcagatagtgctcggcgtccaaa 457
                |||||||| | ||||||| |||||||||| |||||||||||||||||||| |||||||||
Sbjct: 29572359 agtcaatcggccttgccctcctgtgcaccgacctcctgcagatagtgctccgcgtccaaa 29572300

                                
Query: 458      gcagccatgcaacctg 473
                ||||||||||| ||||
Sbjct: 29572299 gcagccatgcaccctg 29572284
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>dbj|AP004165.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1479_B12
          Length = 127089

 Score =  103 bits (52), Expect = 5e-19
 Identities = 70/76 (92%)
 Strand = Plus / Minus

                                                                         
Query: 398   agtcaatcagacttgcccacctgtgcacccacctcctgcagatagtgctcggcgtccaaa 457
             |||||||| | ||||||| |||||||||| |||||||||||||||||||| |||||||||
Sbjct: 30080 agtcaatcggccttgccctcctgtgcaccgacctcctgcagatagtgctccgcgtccaaa 30021

                             
Query: 458   gcagccatgcaacctg 473
             ||||||||||| ||||
Sbjct: 30020 gcagccatgcaccctg 30005
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>emb|AJ421947.1|TAE421947 Triticum aestivum mRNA for NADPH-thioredoxin reductase (ntr gene)
          Length = 1045

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 81/92 (88%)
 Strand = Plus / Minus

                                                                        
Query: 398  agtcaatcagacttgcccacctgtgcacccacctcctgcagatagtgctcggcgtccaaa 457
            |||||||||| ||| ||  ||||||| || ||||||||||| |||||||| |||||||||
Sbjct: 1035 agtcaatcagtcttcccttcctgtgcgccaacctcctgcaggtagtgctccgcgtccaaa 976

                                            
Query: 458  gcagccatgcaacctgatccagcagcagtaat 489
            |||||||| ||||||||||| || ||||||||
Sbjct: 975  gcagccatacaacctgatcctgcggcagtaat 944
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>gb|AY105128.1| Zea mays PCO155238 mRNA sequence
          Length = 958

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 66/73 (90%)
 Strand = Plus / Minus

                                                                       
Query: 417 cctgtgcacccacctcctgcagatagtgctcggcgtccaaagcagccatgcaacctgatc 476
           ||||||| || ||||||||||| |||||||| || |||| ||||||||||||||||||||
Sbjct: 720 cctgtgctccaacctcctgcaggtagtgctctgcatccagagcagccatgcaacctgatc 661

                        
Query: 477 cagcagcagtaat 489
           |||| ||||||||
Sbjct: 660 cagctgcagtaat 648
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>dbj|AK106368.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-C03, full
            insert sequence
          Length = 1383

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                        
Query: 398  agtcaatcagacttgcccacctgtgcacccacctcctgcagatagtgctcggcgtccaaa 457
            |||||||||| |||| |  ||||||| || | |||||| || |||||||| || ||||| 
Sbjct: 1161 agtcaatcagtcttgtcttcctgtgctccaatctcctgtaggtagtgctccgcatccaac 1102

                                            
Query: 458  gcagccatgcaacctgatccagcagcagtaat 489
            || ||||||||||||||||| || ||||||||
Sbjct: 1101 gccgccatgcaacctgatcccgcggcagtaat 1070
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>ref|NM_129731.3| Arabidopsis thaliana disulfide oxidoreductase/ electron transporter/
            oxidoreductase/ thioredoxin-disulfide reductase AT2G41680
            mRNA, complete cds
          Length = 1800

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 454  caaagcagccatgcaacctgatccagcagcagt 486
            ||||||||| ||||| |||||||||||||||||
Sbjct: 1171 caaagcagctatgcatcctgatccagcagcagt 1139
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>gb|BT000516.1| Arabidopsis thaliana putative thioredoxin reductase
            (At2g41680/T32G6.20) mRNA, complete cds
          Length = 1590

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 454  caaagcagccatgcaacctgatccagcagcagt 486
            ||||||||| ||||| |||||||||||||||||
Sbjct: 1155 caaagcagctatgcatcctgatccagcagcagt 1123
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>gb|AY093250.1| Arabidopsis thaliana putative thioredoxin reductase (At2g41680)
           mRNA, complete cds
          Length = 803

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 454 caaagcagccatgcaacctgatccagcagcagt 486
           ||||||||| ||||| |||||||||||||||||
Sbjct: 261 caaagcagctatgcatcctgatccagcagcagt 229
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>gb|AC002510.3| Arabidopsis thaliana chromosome 2 clone T32G6 map CIC11C08, complete
             sequence
          Length = 91979

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 454   caaagcagccatgcaacctgatccagcagcagt 486
             ||||||||| ||||| |||||||||||||||||
Sbjct: 78015 caaagcagctatgcatcctgatccagcagcagt 78047
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>gb|AY062479.1| Arabidopsis thaliana putative thioredoxin reductase (At2g41680;
            T32G6.20) mRNA, complete cds
          Length = 1802

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 454  caaagcagccatgcaacctgatccagcagcagt 486
            ||||||||| ||||| |||||||||||||||||
Sbjct: 1188 caaagcagctatgcatcctgatccagcagcagt 1156
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>gb|AY056394.1| Arabidopsis thaliana At2g41680/T32G6.20 mRNA, complete cds
          Length = 1783

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 454  caaagcagccatgcaacctgatccagcagcagt 486
            ||||||||| ||||| |||||||||||||||||
Sbjct: 1168 caaagcagctatgcatcctgatccagcagcagt 1136
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>emb|BX821094.1|CNS0A9Z3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL14ZD09 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 644

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 454 caaagcagccatgcaacctgatccagcagcagt 486
           ||||||||| ||||| |||||||||||||||||
Sbjct: 42  caaagcagctatgcatcctgatccagcagcagt 10
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>emb|BX820757.1|CNS0A9JK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH67ZD05 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1726

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 454  caaagcagccatgcaacctgatccagcagcagt 486
            ||||||||| ||||| |||||||||||||||||
Sbjct: 1161 caaagcagctatgcatcctgatccagcagcagt 1129
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>emb|BX819883.1|CNS0A9GU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS42ZF11 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1356

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 454 caaagcagccatgcaacctgatccagcagcagt 486
           ||||||||| ||||| |||||||||||||||||
Sbjct: 798 caaagcagctatgcatcctgatccagcagcagt 766
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>emb|BX820128.1|CNS0A9G2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS78ZB05 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1730

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 454  caaagcagccatgcaacctgatccagcagcagt 486
            ||||||||| ||||| |||||||||||||||||
Sbjct: 1171 caaagcagctatgcatcctgatccagcagcagt 1139
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>emb|BX248585.1| Blochmannia floridanus complete genome; segment 2/3
          Length = 267050

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 458    gcagccatgcaacctgatccagcagcagtaat 489
              |||||||| ||||| |||||||||||||||||
Sbjct: 178485 gcagccatacaaccggatccagcagcagtaat 178454
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 63/76 (82%)
 Strand = Plus / Plus

                                                                            
Query: 398      agtcaatcagacttgcccacctgtgcacccacctcctgcagatagtgctcggcgtccaaa 457
                |||||||||| |||| |  ||||||| || | |||||| || |||||||| || ||||| 
Sbjct: 12691717 agtcaatcagtcttgtcttcctgtgctccaatctcctgtaggtagtgctccgcatccaac 12691776

                                
Query: 458      gcagccatgcaacctg 473
                || |||||||||||||
Sbjct: 12691777 gccgccatgcaacctg 12691792
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>dbj|AP005477.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0039F24
          Length = 132107

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 63/76 (82%)
 Strand = Plus / Plus

                                                                         
Query: 398   agtcaatcagacttgcccacctgtgcacccacctcctgcagatagtgctcggcgtccaaa 457
             |||||||||| |||| |  ||||||| || | |||||| || |||||||| || ||||| 
Sbjct: 45238 agtcaatcagtcttgtcttcctgtgctccaatctcctgtaggtagtgctccgcatccaac 45297

                             
Query: 458   gcagccatgcaacctg 473
             || |||||||||||||
Sbjct: 45298 gccgccatgcaacctg 45313
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>gb|CP000016.1| Candidatus Blochmannia pennsylvanicus str. BPEN, complete genome
          Length = 791654

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 458    gcagccatgcaacctgatccagcagcagtaat 489
              |||||||| |||||||||||||| ||||||||
Sbjct: 471980 gcagccatacaacctgatccagctgcagtaat 471949
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>gb|AC091230.23| Homo sapiens chromosome 15, clone RP11-414J4, complete sequence
          Length = 206482

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 151    ttccaccaatgataaatatgaat 173
              |||||||||||||||||||||||
Sbjct: 108155 ttccaccaatgataaatatgaat 108177
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>gb|AC102274.20| Mus musculus chromosome 3, clone RP24-286L19, complete sequence
          Length = 183113

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 157 caatgataaatatgaatcattt 178
           ||||||||||||||||||||||
Sbjct: 590 caatgataaatatgaatcattt 569
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>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 449    gcgtccaaagcagccatgcaacctgatccagcag 482
              ||||||||||| ||||| |||||||| |||||||
Sbjct: 872910 gcgtccaaagctgccatacaacctgaaccagcag 872943
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>gb|AC162300.3| Mus musculus chromosome 3, clone RP23-224F23, complete sequence
          Length = 162774

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 157    caatgataaatatgaatcattt 178
              ||||||||||||||||||||||
Sbjct: 102148 caatgataaatatgaatcattt 102169
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>emb|AL672056.4| Mouse DNA sequence from clone RP23-467O2 on chromosome X, complete
              sequence
          Length = 150695

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 159    atgataaatatgaatcatttcc 180
              ||||||||||||||||||||||
Sbjct: 126180 atgataaatatgaatcatttcc 126201
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>gb|AC117787.8| Mus musculus chromosome 1, clone RP24-546N2, complete sequence
          Length = 203962

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 106    aataataatgtgatttcccca 126
              |||||||||||||||||||||
Sbjct: 154707 aataataatgtgatttcccca 154727
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>gb|AY504728.1| Barnadesia caryophylla NADH dehydrogenase (ndhF) gene, partial cds;
           chloroplast
          Length = 664

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  agaaaaatacaagaacatata 76
           |||||||||||||||||||||
Sbjct: 530 agaaaaatacaagaacatata 510
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>gb|AY504727.1| Dasyphyllum reticulatum NADH dehydrogenase (ndhF) gene, partial
           cds; chloroplast
          Length = 641

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  agaaaaatacaagaacatata 76
           |||||||||||||||||||||
Sbjct: 536 agaaaaatacaagaacatata 516
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>gb|AC115860.9| Mus musculus chromosome 1, clone RP24-290C11, complete sequence
          Length = 240785

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 106    aataataatgtgatttcccca 126
              |||||||||||||||||||||
Sbjct: 203942 aataataatgtgatttcccca 203922
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>gb|AC116404.12| Mus musculus chromosome 5, clone RP23-143M9, complete sequence
          Length = 211381

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 106   aataataatgtgatttcccca 126
             |||||||||||||||||||||
Sbjct: 11866 aataataatgtgatttcccca 11886
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>gb|AC121878.1| Mus musculus BAC clone RP24-131C8 from 5, complete sequence
          Length = 163985

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 106    aataataatgtgatttcccca 126
              |||||||||||||||||||||
Sbjct: 143591 aataataatgtgatttcccca 143611
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>dbj|AP000942.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-864G5, complete
             sequence
          Length = 185984

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 409   cttgcccacctgtgcacccacctcctgca 437
             ||||||||||||  |||||||||||||||
Sbjct: 66965 cttgcccacctgcccacccacctcctgca 66993
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>dbj|AP002777.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-640G3, complete
              sequence
          Length = 169515

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 409    cttgcccacctgtgcacccacctcctgca 437
              ||||||||||||  |||||||||||||||
Sbjct: 149742 cttgcccacctgcccacccacctcctgca 149770
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>gb|AC109143.19| Mus musculus chromosome 1, clone RP23-105D15, complete sequence
          Length = 211924

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 106   aataataatgtgatttcccca 126
             |||||||||||||||||||||
Sbjct: 44716 aataataatgtgatttcccca 44696
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>gb|L39392.1|DPUCPNDHF Dasyphyllum argenteum chloroplast NADH dehydrogenase (ndhF) gene,
            complete cds
          Length = 2235

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 56   agaaaaatacaagaacatata 76
            |||||||||||||||||||||
Sbjct: 2190 agaaaaatacaagaacatata 2170
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>gb|L39396.1|DOICPNDHF Doniophyton anomalum chloroplast NADH dehydrogenase (ndhF) gene,
            complete cds
          Length = 2235

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 56   agaaaaatacaagaacatata 76
            |||||||||||||||||||||
Sbjct: 2190 agaaaaatacaagaacatata 2170
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>gb|L39393.1|CQRCPNDHF Chuquiraga jussieui chloroplast NADH dehydrogenase (ndhF) gene,
            complete cds
          Length = 2235

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 56   agaaaaatacaagaacatata 76
            |||||||||||||||||||||
Sbjct: 2190 agaaaaatacaagaacatata 2170
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>gb|L39394.1|BRICPNDHF Barnadesia caryophylla chloroplast NADH dehydrogenase (ndhF) gene,
            complete cds
          Length = 2235

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 56   agaaaaatacaagaacatata 76
            |||||||||||||||||||||
Sbjct: 2190 agaaaaatacaagaacatata 2170
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>gb|AC090121.37| Mus musculus strain C57BL/6J chromosome 16 clone rp23-141k23, complete
              sequence
          Length = 188804

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 414    ccacctgtgcacccacctcctgcag 438
              ||||||||||| |||||||||||||
Sbjct: 129083 ccacctgtgcagccacctcctgcag 129059
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>gb|AY728222.1| Plethodon petraeus mitochondrion, complete genome
          Length = 19235

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 44   cactccaaacatagaaaaat 63
            ||||||||||||||||||||
Sbjct: 9388 cactccaaacatagaaaaat 9407
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 436    cagatagtgctcggcgtccaaagcagccatgcaacc 471
              ||||||| |||||||||| |  ||||||||||||||
Sbjct: 519711 cagatagcgctcggcgtcgagggcagccatgcaacc 519676
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>gb|AC007558.3| Homo sapiens BAC clone RP11-148A10 from 7, complete sequence
          Length = 120141

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 411   tgcccacctgtgcacccacc 430
             ||||||||||||||||||||
Sbjct: 42071 tgcccacctgtgcacccacc 42090
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>gb|AC159873.11| Medicago truncatula clone mth2-46p15, complete sequence
          Length = 129948

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    aaaatacaagaacatatatt 78
             ||||||||||||||||||||
Sbjct: 94973 aaaatacaagaacatatatt 94954
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>gb|AC125475.11| Medicago truncatula clone mth2-5j2, complete sequence
          Length = 165679

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    aaaatacaagaacatatatt 78
             ||||||||||||||||||||
Sbjct: 99870 aaaatacaagaacatatatt 99889
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>gb|AY029520.1| Fiji disease virus RNA-dependent RNA polymerase gene, complete
          cds
          Length = 4532

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 55 tagaaaaatacaagaacata 74
          ||||||||||||||||||||
Sbjct: 78 tagaaaaatacaagaacata 97
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>gb|AC100729.21| Mus musculus chromosome 19, clone RP24-286E16, complete sequence
          Length = 167242

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 118    atttccccaatgatacataagaat 141
              ||||||||||||||| ||||||||
Sbjct: 130177 atttccccaatgatagataagaat 130200
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>emb|AL512635.8| Human DNA sequence from clone RP11-15P13 on chromosome 9 Contains a
              survival of motor neuron 1, telomeric (SMN1) pseudogene and
              the 3' end of the MLLT3 gene for myeloid/lymphoid or
              mixed-lineage leukemia (trithorax homolog, Drosophila);
              translocated to, 3 (AF9), complete sequence
          Length = 178631

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     tcagaaaaaacagacatgtt 41
              ||||||||||||||||||||
Sbjct: 150083 tcagaaaaaacagacatgtt 150102
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>emb|AL353629.22| Human DNA sequence from clone RP11-30L4 on chromosome 9q22.1-22.33
             Contains the 5' end of a novel gene, two novel genes, the
             C9orf10 gene for chromosome 9 open reading frame 10, the
             5' end of the PHF2 gene for PHD finger protein 2 and three
             CpG islands, complete sequence
          Length = 170845

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 418   ctgtgcacccacctcctgca 437
             ||||||||||||||||||||
Sbjct: 61161 ctgtgcacccacctcctgca 61142
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>gb|AC157550.3| Mus musculus chromosome 15, clone RP24-263A11, complete sequence
          Length = 198532

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 58    aaaaatacaagaacatatatttct 81
             ||||||||||||||||||| ||||
Sbjct: 54494 aaaaatacaagaacatataattct 54471
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>gb|AC158149.3| Mus musculus chromosome 5, clone RP24-296L6, complete sequence
          Length = 155517

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    aacatagaaaaatacaagaa 70
             ||||||||||||||||||||
Sbjct: 62066 aacatagaaaaatacaagaa 62085
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>emb|CR762445.5| Zebrafish DNA sequence from clone DKEY-11C9 in linkage group 5, complete
              sequence
          Length = 119683

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     aaaacagacatgttctcact 47
              ||||||||||||||||||||
Sbjct: 105521 aaaacagacatgttctcact 105502
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>dbj|AK126368.1| Homo sapiens cDNA FLJ44404 fis, clone TUTER2001387
          Length = 3359

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 103 cagaataataatgtgatttc 122
           ||||||||||||||||||||
Sbjct: 795 cagaataataatgtgatttc 814
to top
>dbj|AK158687.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched library,
            clone:K230054D19 product:unclassifiable, full insert
            sequence
          Length = 1229

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 51   aacatagaaaaatacaagaa 70
            ||||||||||||||||||||
Sbjct: 1071 aacatagaaaaatacaagaa 1090
to top
>emb|BX255951.13| Zebrafish DNA sequence from clone DKEYP-31E5 in linkage group 5, complete
              sequence
          Length = 171425

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     aaaacagacatgttctcact 47
              ||||||||||||||||||||
Sbjct: 103758 aaaacagacatgttctcact 103739
to top
>gb|AC002050.8| Homo sapiens Chromosome 9p22 Cosmid Clone 213a7, complete sequence
          Length = 42210

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    tcagaaaaaacagacatgtt 41
             ||||||||||||||||||||
Sbjct: 25648 tcagaaaaaacagacatgtt 25667
to top
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 356    gcggctttcggcgagctgat 375
              ||||||||||||||||||||
Sbjct: 346110 gcggctttcggcgagctgat 346091
to top
>dbj|AP001724.1| Homo sapiens genomic DNA, chromosome 21q, section 68/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    cagaataataatgtgatttc 122
              ||||||||||||||||||||
Sbjct: 278628 cagaataataatgtgatttc 278609
to top
>dbj|BS000201.1| Pan troglodytes chromosome 22 clone:PTB-047A24, map 22, complete
             sequences
          Length = 165662

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   cagaataataatgtgatttc 122
             ||||||||||||||||||||
Sbjct: 37031 cagaataataatgtgatttc 37012
to top
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     aacatatatttctggtggag 88
              ||||||||||||||||||||
Sbjct: 465795 aacatatatttctggtggag 465814
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>gb|AC021008.10| Mus musculus chromosome 15, clone RP23-59C1, complete sequence
          Length = 188952

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 58     aaaaatacaagaacatatatttct 81
              ||||||||||||||||||| ||||
Sbjct: 105588 aaaaatacaagaacatataattct 105565
to top
>gb|AC111039.13| Mus musculus chromosome 5, clone RP24-463M5, complete sequence
          Length = 141949

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     aacatagaaaaatacaagaa 70
              ||||||||||||||||||||
Sbjct: 100985 aacatagaaaaatacaagaa 101004
to top
>gb|AC100745.8| Mus musculus chromosome 15, clone RP24-372F6, complete sequence
          Length = 168891

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 58     aaaaatacaagaacatatatttct 81
              ||||||||||||||||||| ||||
Sbjct: 147216 aaaaatacaagaacatataattct 147193
to top
>gb|U91640.1|HSU91640 Human survival motor neuron pseudogene
          Length = 1643

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 22   tcagaaaaaacagacatgtt 41
            ||||||||||||||||||||
Sbjct: 1209 tcagaaaaaacagacatgtt 1228
to top
>gb|AC122329.4| Mus musculus BAC clone RP23-341A12 from 19, complete sequence
          Length = 192481

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 118   atttccccaatgatacataagaat 141
             ||||||||||||||| ||||||||
Sbjct: 35971 atttccccaatgatagataagaat 35994
to top
>dbj|AP000688.1| Homo sapiens genomic DNA, chromosome 21q22.2, PAC clone:P27A22,
             CBR1-HLCS region
          Length = 171703

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   cagaataataatgtgatttc 122
             ||||||||||||||||||||
Sbjct: 93814 cagaataataatgtgatttc 93795
to top
>dbj|AB003151.1| Homo sapiens DNA, chromosome 21q22.2, PAC clone 25P16 complete
             sequence, encoding carbonyl reductase and carbonyl
             reductase 3 (complete cds)
          Length = 170529

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   cagaataataatgtgatttc 122
             ||||||||||||||||||||
Sbjct: 28636 cagaataataatgtgatttc 28617
to top
>dbj|AP005204.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-340P19, complete
             sequence
          Length = 157244

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    tccaaacatagaaaaataca 66
             ||||||||||||||||||||
Sbjct: 70005 tccaaacatagaaaaataca 69986
to top
>emb|AL513498.2|HS336O12 Homo sapiens chromosome 9 BAC RP11-336O12, complete sequence
          Length = 155780

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 22  tcagaaaaaacagacatgtt 41
           ||||||||||||||||||||
Sbjct: 578 tcagaaaaaacagacatgtt 597


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,333,531
Number of Sequences: 3902068
Number of extensions: 5333531
Number of successful extensions: 119313
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119067
Number of HSP's gapped (non-prelim): 246
length of query: 489
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 467
effective length of database: 17,147,199,772
effective search space: 8007742293524
effective search space used: 8007742293524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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