ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart26d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CTRO_MOUSE (P49025) Citron Rho-interacting kinase (EC 2.7.11.1) ... 32 0.93
2LEGB_PEA (P14594) Legumin B [Contains: Legumin B alpha chain (Le... 31 2.1
3AT11C_HUMAN (Q8NB49) Probable phospholipid-transporting ATPase I... 30 2.7
4VGLM_BUNSH (P04875) M polyprotein precursor [Contains: Glycoprot... 30 3.5
5AT11C_MOUSE (Q9QZW0) Probable phospholipid-transporting ATPase 1... 30 4.6
6SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calciu... 29 6.0
7MYO5C_HUMAN (Q9NQX4) Myosin-5C (Myosin Vc) 29 7.8
8SRCH_HUMAN (P23327) Sarcoplasmic reticulum histidine-rich calciu... 29 7.8
9HMW2_MYCGE (P47460) Cytadherence high molecular weight protein 2... 29 7.8

>CTRO_MOUSE (P49025) Citron Rho-interacting kinase (EC 2.7.11.1) (CRIK)|
           (Rho-interacting, serine/threonine-protein kinase 21)
          Length = 2055

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 489 AEEEEEDAH-RQDKDEGLKMKLFRRFHRHHAHDSENEVDEVEELARK 352
           AE E E  H R+D  EG+K KL     R H+   EN+V  +E + R+
Sbjct: 668 AERELEKLHNREDSSEGIKKKLVEAEERRHS--LENKVKRLETMERR 712



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>LEGB_PEA (P14594) Legumin B [Contains: Legumin B alpha chain (Legumin B|
           acidic chain); Legumin B beta chain (Legumin B basic
           chain)] (Fragment)
          Length = 338

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -3

Query: 486 EEEEEDAHRQDKDEGLKMKLFRRFHRHHAHDSENEVDEVEELARK 352
           +EEEE +H Q K+E  + +  R  HR H+   + + DE EE  R+
Sbjct: 52  QEEEEQSHSQRKEEEEEEQEQR--HRKHSKKEDEDEDEEEEEERE 94



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>AT11C_HUMAN (Q8NB49) Probable phospholipid-transporting ATPase IG (EC 3.6.3.1)|
            (ATPase class I type 11C) (ATPase IG) (ATPase IQ) (ATPase
            class VI type 11C)
          Length = 1132

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -2

Query: 124  YFFFLRIPRYITTWVYVLLCLFVSLFARV 38
            YF F ++   ++TW+ ++L +F+SLF  +
Sbjct: 1057 YFVFAQMLSSVSTWLAIILLIFISLFPEI 1085



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>VGLM_BUNSH (P04875) M polyprotein precursor [Contains: Glycoprotein G2;|
           Nonstructural protein NS-M; Glycoprotein G1]
          Length = 1441

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
 Frame = -2

Query: 130 ISYFFFLRIPRYITTWVYVLLCLFVSL--------FARVGRLYEQQCDVF 5
           I++++F+ I  Y  TW  +++ L + L        F+ +  +Y ++CD++
Sbjct: 354 INFYYFVCIMNYAVTWGLIIIGLLIGLLFKKYQHRFSNLYAMYCEECDMY 403



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>AT11C_MOUSE (Q9QZW0) Probable phospholipid-transporting ATPase 11C (EC 3.6.3.1)|
           (Fragment)
          Length = 347

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -2

Query: 124 YFFFLRIPRYITTWVYVLLCLFVSLFARV 38
           YF F ++   ++TW+ ++L +F+SLF  +
Sbjct: 285 YFVFAQMLCSVSTWLAIILLIFISLFPEI 313



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>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding|
           protein precursor
          Length = 852

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 480 EEEDAHRQDKDEGLKMKLFR-RFHRHHAHDSENEVDEVEE 364
           EEE+    D DEG   +  R + HRH  H  E + D+ +E
Sbjct: 260 EEEEDEEDDDDEGDSTESDRHQAHRHRGHREEEDEDDDDE 299



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>MYO5C_HUMAN (Q9NQX4) Myosin-5C (Myosin Vc)|
          Length = 1742

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -3

Query: 486  EEEEEDAHRQDKDEGLKMKLFRRFHRHHAHDSENEVDEVEEL 361
            EE     HR  ++EG + K     +  H  + E  +D+++E+
Sbjct: 1244 EELSNQLHRSQEEEGTQRKALEAQNEIHTKEKEKLIDKIQEM 1285



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>SRCH_HUMAN (P23327) Sarcoplasmic reticulum histidine-rich calcium-binding|
           protein precursor
          Length = 699

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 486 EEEEEDAHRQDKDEGLKMKLFRRFHRHHAHDSENEVD 376
           +E EE+   ++++E    +   + HRH  H SE + D
Sbjct: 190 DEGEEEEEEEEEEEEASTEYGHQAHRHRGHGSEEDED 226



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>HMW2_MYCGE (P47460) Cytadherence high molecular weight protein 2 (Cytadherence|
            accessory protein 2)
          Length = 1805

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 12/49 (24%), Positives = 28/49 (57%)
 Frame = -3

Query: 480  EEEDAHRQDKDEGLKMKLFRRFHRHHAHDSENEVDEVEELARKLGEAIV 334
            +E+D  R+D++   + K F + +       + E++E+E++ R L ++ V
Sbjct: 1038 KEQDQQRKDQEINWRFKQFEKEYTDFDEAKKRELEELEKIRRSLSQSNV 1086


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,903,017
Number of Sequences: 219361
Number of extensions: 939117
Number of successful extensions: 3184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3148
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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