ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart26d10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 149 bits (75), Expect = 8e-33 Identities = 168/199 (84%) Strand = Plus / Minus Query: 218 agaagttctccttgtggaagacgaacttggtggtggtccggtgcgagaagtcgtgcgaca 277 |||| |||||||||||||||||||| |||||||||||| ||| |||||||| || | | Sbjct: 21687021 agaaattctccttgtggaagacgaatttggtggtggtcttgtgggagaagtcctgggcga 21686962 Query: 278 gccgcctgagctccggcgtgagcttctggtcgccgcagtagaagaccccgacgcgctgcc 337 | || | |||||||||||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct: 21686961 ggcggcggagctccggcgtgagcgcctggtcgccgcagaagaagacgccgacgcgctgcc 21686902 Query: 338 cctggtggtcgcaggcgacgcgcttgtagacgtcgcgccagcagggcctggcgaagtgcg 397 ||||||||| ||||||||||||| | ||||||||||||| || | |||||||| | Sbjct: 21686901 cctggtggttcacggcgacgcgcttgaacacgtcgcgccagctcgggcgcgcgaagtggg 21686842 Query: 398 tgcggacgcgggtcccgga 416 |||| || || |||||||| Sbjct: 21686841 tgcgcacccgcgtcccgga 21686823
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 149 bits (75), Expect = 8e-33 Identities = 168/199 (84%) Strand = Plus / Minus Query: 218 agaagttctccttgtggaagacgaacttggtggtggtccggtgcgagaagtcgtgcgaca 277 |||| |||||||||||||||||||| |||||||||||| ||| |||||||| || | | Sbjct: 21615366 agaaattctccttgtggaagacgaatttggtggtggtcttgtgggagaagtcctgggcga 21615307 Query: 278 gccgcctgagctccggcgtgagcttctggtcgccgcagtagaagaccccgacgcgctgcc 337 | || | |||||||||||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct: 21615306 ggcggcggagctccggcgtgagcgcctggtcgccgcagaagaagacgccgacgcgctgcc 21615247 Query: 338 cctggtggtcgcaggcgacgcgcttgtagacgtcgcgccagcagggcctggcgaagtgcg 397 ||||||||| ||||||||||||| | ||||||||||||| || | |||||||| | Sbjct: 21615246 cctggtggttcacggcgacgcgcttgaacacgtcgcgccagctcgggcgcgcgaagtggg 21615187 Query: 398 tgcggacgcgggtcccgga 416 |||| || || |||||||| Sbjct: 21615186 tgcgcacccgcgtcccgga 21615168
>emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa0024C08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 186030 Score = 149 bits (75), Expect = 8e-33 Identities = 168/199 (84%) Strand = Plus / Plus Query: 218 agaagttctccttgtggaagacgaacttggtggtggtccggtgcgagaagtcgtgcgaca 277 |||| |||||||||||||||||||| |||||||||||| ||| |||||||| || | | Sbjct: 125530 agaaattctccttgtggaagacgaatttggtggtggtcttgtgggagaagtcctgggcga 125589 Query: 278 gccgcctgagctccggcgtgagcttctggtcgccgcagtagaagaccccgacgcgctgcc 337 | || | |||||||||||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct: 125590 ggcggcggagctccggcgtgagcgcctggtcgccgcagaagaagacgccgacgcgctgcc 125649 Query: 338 cctggtggtcgcaggcgacgcgcttgtagacgtcgcgccagcagggcctggcgaagtgcg 397 ||||||||| ||||||||||||| | ||||||||||||| || | |||||||| | Sbjct: 125650 cctggtggttcacggcgacgcgcttgaacacgtcgcgccagctcgggcgcgcgaagtggg 125709 Query: 398 tgcggacgcgggtcccgga 416 |||| || || |||||||| Sbjct: 125710 tgcgcacccgcgtcccgga 125728
>gb|BT009119.1| Triticum aestivum clone wl1n.pk0005.c8:fis, full insert mRNA sequence Length = 543 Score = 69.9 bits (35), Expect = 6e-09 Identities = 158/199 (79%) Strand = Plus / Minus Query: 218 agaagttctccttgtggaagacgaacttggtggtggtccggtgcgagaagtcgtgcgaca 277 ||||||||||||||||||| ||||||||||| ||||| |||||||||| |||| || Sbjct: 375 agaagttctccttgtggaactcgaacttggtgttggtcttccgcgagaagtcctgcgcca 316 Query: 278 gccgcctgagctccggcgtgagcttctggtcgccgcagtagaagaccccgacgcgctgcc 337 || | |||||| || ||| | || ||||||||||||| || ||||||||||| Sbjct: 315 gctcgcgcagctccttggtcagcaccggggcgccgcagtagaacactccgacgcgctggt 256 Query: 338 cctggtggtcgcaggcgacgcgcttgtagacgtcgcgccagcagggcctggcgaagtgcg 397 |||||||| | |||| |||||||||||||| ||||||| |||||||||||||| | Sbjct: 255 tctggtggttgagcgcgatgcgcttgtagacgttgcgccagttaggcctggcgaagtggg 196 Query: 398 tgcggacgcgggtcccgga 416 | ||||||||| ||||| Sbjct: 195 tcttgacgcgggtgccgga 177
>gb|AC133248.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0080I08, complete sequence Length = 197156 Score = 48.1 bits (24), Expect = 0.023 Identities = 57/68 (83%) Strand = Plus / Plus Query: 351 ggcgacgcgcttgtagacgtcgcgccagcagggcctggcgaagtgcgtgcggacgcgggt 410 ||||| |||||||||||||| ||||||| ||| | ||||||||| || ||||||||| Sbjct: 189610 ggcgatgcgcttgtagacgttgcgccagttggggcgggcgaagtgggtcttgacgcgggt 189669 Query: 411 cccggaga 418 ||||||| Sbjct: 189670 gccggaga 189677
>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17, complete sequence Length = 148829 Score = 48.1 bits (24), Expect = 0.023 Identities = 57/68 (83%) Strand = Plus / Plus Query: 351 ggcgacgcgcttgtagacgtcgcgccagcagggcctggcgaagtgcgtgcggacgcgggt 410 ||||| |||||||||||||| ||||||| ||| | ||||||||| || ||||||||| Sbjct: 28965 ggcgatgcgcttgtagacgttgcgccagttggggcgggcgaagtgggtcttgacgcgggt 29024 Query: 411 cccggaga 418 ||||||| Sbjct: 29025 gccggaga 29032
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 48.1 bits (24), Expect = 0.023 Identities = 57/68 (83%) Strand = Plus / Plus Query: 351 ggcgacgcgcttgtagacgtcgcgccagcagggcctggcgaagtgcgtgcggacgcgggt 410 ||||| |||||||||||||| ||||||| ||| | ||||||||| || ||||||||| Sbjct: 18925594 ggcgatgcgcttgtagacgttgcgccagttggggcgggcgaagtgggtcttgacgcgggt 18925653 Query: 411 cccggaga 418 ||||||| Sbjct: 18925654 gccggaga 18925661
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 48.1 bits (24), Expect = 0.023 Identities = 57/68 (83%) Strand = Plus / Plus Query: 351 ggcgacgcgcttgtagacgtcgcgccagcagggcctggcgaagtgcgtgcggacgcgggt 410 ||||| |||||||||||||| ||||||| ||| | ||||||||| || ||||||||| Sbjct: 19084416 ggcgatgcgcttgtagacgttgcgccagttggggcgggcgaagtgggtcttgacgcgggt 19084475 Query: 411 cccggaga 418 ||||||| Sbjct: 19084476 gccggaga 19084483
>gb|AE014840.1| Plasmodium falciparum 3D7 chromosome 11 section 5 of 8 of the complete sequence Length = 249995 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 192 ttaagttaacatgtggaattta 213 |||||||||||||||||||||| Sbjct: 73667 ttaagttaacatgtggaattta 73646
>emb|AL158050.8| Human DNA sequence from clone RP3-437C15 on chromosome 6 Contains a Wilms' tumour 1-associating protein (WTAP) (KIAA0105) pseudogene, complete sequence Length = 149679 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 193 taagttaacatgtggaatttat 214 |||||||||||||||||||||| Sbjct: 69822 taagttaacatgtggaatttat 69801
>gb|AF382348.1| Cryptosporidium wrairi isolate 517 actin gene, partial cds Length = 1062 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 81 tacgaagaagaaatgaagaaat 102 |||||||||||||||||||||| Sbjct: 633 tacgaagaagaaatgaagaaat 654
>gb|AC003953.1| Homo sapiens chromosome 9, P1 clone 8660 (LBNL H105), complete sequence Length = 75871 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 gtggaatttatctcagaagtt 224 ||||||||||||||||||||| Sbjct: 57014 gtggaatttatctcagaagtt 57034
>gb|AC158918.7| Mus musculus chromosome 15, clone RP23-106N12, complete sequence Length = 209747 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 gaagaagaaatgaagaaatgt 104 ||||||||||||||||||||| Sbjct: 100926 gaagaagaaatgaagaaatgt 100906
>ref|XM_414752.1| PREDICTED: Gallus gallus similar to transformation/transcription domain-associated protein (LOC416440), mRNA Length = 12717 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 376 cagcagggcctggcgaagtgc 396 ||||||||||||||||||||| Sbjct: 11158 cagcagggcctggcgaagtgc 11178
>emb|AL391475.7| Human DNA sequence from clone RP11-33G16 on chromosome 9 Contains a novel gene, complete sequence Length = 163058 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 gtggaatttatctcagaagtt 224 ||||||||||||||||||||| Sbjct: 65306 gtggaatttatctcagaagtt 65326
>gb|AC084388.1| Mus musculus clone RP23-132G6, complete sequence Length = 208754 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 gaagaagaaatgaagaaatgt 104 ||||||||||||||||||||| Sbjct: 196759 gaagaagaaatgaagaaatgt 196739
>gb|AC121223.5| Rattus norvegicus BAC CH230-70M4 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 263147 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 78 aggtacgaagaagaaatgaagaaat 102 |||||||||||||||||||| |||| Sbjct: 219181 aggtacgaagaagaaatgaaaaaat 219157
>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete genome Length = 2516575 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 tacgaagaagaaatgaagaaa 101 ||||||||||||||||||||| Sbjct: 190589 tacgaagaagaaatgaagaaa 190609
>gb|AC107751.11| Mus musculus chromosome 15, clone RP23-244L21, complete sequence Length = 188768 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 gaagaagaaatgaagaaatgt 104 ||||||||||||||||||||| Sbjct: 52453 gaagaagaaatgaagaaatgt 52473
>gb|AC104772.3| Homo sapiens BAC clone RP11-3I22 from 2, complete sequence Length = 106526 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 gtggaatttatctcagaagtt 224 ||||||||||||||||||||| Sbjct: 99195 gtggaatttatctcagaagtt 99215
>gb|AC083910.9| Mus musculus 1 BAC RP23-337F12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 208408 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 283 ctgagctccggcgtgagcttctggt 307 ||||||||||| ||||||||||||| Sbjct: 35870 ctgagctccggggtgagcttctggt 35894
>dbj|AP001892.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-49M9, complete sequences Length = 144308 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 aagtgaataaaatgtatatgt 163 ||||||||||||||||||||| Sbjct: 12021 aagtgaataaaatgtatatgt 12001
>dbj|AP000798.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-43E2, complete sequences Length = 113054 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 aagtgaataaaatgtatatgt 163 ||||||||||||||||||||| Sbjct: 58505 aagtgaataaaatgtatatgt 58485
>gb|AC110118.8| Rattus norvegicus BAC CH230-310N6 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 175663 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 78 aggtacgaagaagaaatgaagaaat 102 |||||||||||||||||||| |||| Sbjct: 130355 aggtacgaagaagaaatgaaaaaat 130331
>gb|AC170750.2| Mus musculus BAC clone RP23-295C23 from chromosome 1, complete sequence Length = 203110 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 283 ctgagctccggcgtgagcttctggt 307 ||||||||||| ||||||||||||| Sbjct: 109168 ctgagctccggggtgagcttctggt 109192
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 agaagtcgtgcgacagccgc 282 |||||||||||||||||||| Sbjct: 657187 agaagtcgtgcgacagccgc 657168
>gb|AC123834.4| Mus musculus BAC clone RP24-132N9 from chromosome 13, complete sequence Length = 153028 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 agcaagtgaataaaatgtat 159 |||||||||||||||||||| Sbjct: 23359 agcaagtgaataaaatgtat 23340
>gb|AC116325.5| Mus musculus BAC clone RP23-295K3 from 10, complete sequence Length = 196265 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 agtgaataaaatgtatatgtactg 167 ||||||||||||| |||||||||| Sbjct: 171519 agtgaataaaatgaatatgtactg 171542
>emb|CR729258.2|CNS0GPN4 Tetraodon nigroviridis full-length cDNA Length = 1651 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 215 ctcagaagttctccttgtggaagacgaacttg 246 |||| ||||||||||||| ||||| ||||||| Sbjct: 1362 ctcaaaagttctccttgttgaagatgaacttg 1331
>emb|AL158063.12| Human DNA sequence from clone RP11-29B2 on chromosome 13 Contains the TPP2 gene for tripeptidyl peptidase II, a novel gene and 2 CpG islands, complete sequence Length = 158481 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tattttagactaaatatgct 70 |||||||||||||||||||| Sbjct: 72962 tattttagactaaatatgct 72943
>emb|AL138885.21| Human DNA sequence from clone RP1-290I10 on chromosome 6 Contains a ribosomal protein L7 (RPL7) pseudogene, the TFAP2A gene for transcription factor AP-2 alpha (activating enhancer-binding protein 2 alpha), four novel genes, a mitochondrial ribosomal protein L47 (MRPL47) pseudogene and 11 CpG islands, complete sequence Length = 180133 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 agcaagtgaataaaatgtat 159 |||||||||||||||||||| Sbjct: 85475 agcaagtgaataaaatgtat 85494
>emb|AL049774.1|HS10618B Human DNA sequence from clone RP5-1061O18 on chromosome 22q13.32-13.33 Contains an STS and GSSs, complete sequence Length = 26584 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gacgcgctgcccctggtggt 346 |||||||||||||||||||| Sbjct: 8731 gacgcgctgcccctggtggt 8712
>gb|AC155168.3| Mus musculus BAC clone RP23-208M17 from chromosome 10, complete sequence Length = 174112 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 agtgaataaaatgtatatgtactg 167 ||||||||||||| |||||||||| Sbjct: 52777 agtgaataaaatgaatatgtactg 52800
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 accccgacgcgctgcccctggtgg 345 ||||||||| |||||||||||||| Sbjct: 4460003 accccgacgtgctgcccctggtgg 4459980
>gb|AC106716.3| Homo sapiens 3 BAC RP11-202P1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152883 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 agaagaaatgaagaaatgta 105 |||||||||||||||||||| Sbjct: 104099 agaagaaatgaagaaatgta 104118
>gb|AC110053.3| Homo sapiens chromosome 8, clone CTD-3145H4, complete sequence Length = 142225 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 taacatgtggaatttatctc 217 |||||||||||||||||||| Sbjct: 117405 taacatgtggaatttatctc 117424
>gb|AC117424.6| Homo sapiens 3 BAC RP11-172I10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 136511 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 agaagaaatgaagaaatgta 105 |||||||||||||||||||| Sbjct: 98549 agaagaaatgaagaaatgta 98530
>gb|AC107904.6| Homo sapiens chromosome 8, clone RP11-644K4, complete sequence Length = 171676 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 taacatgtggaatttatctc 217 |||||||||||||||||||| Sbjct: 81988 taacatgtggaatttatctc 81969
>gb|AC068992.31| Homo sapiens 8 BAC RP11-406I9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 143611 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 aagaagaaatgaagaaatgt 104 |||||||||||||||||||| Sbjct: 70358 aagaagaaatgaagaaatgt 70377
>gb|AC090094.5| Homo sapiens chromosome 8, clone RP11-252C19, complete sequence Length = 158404 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 gaagaagaaatgaagaaatg 103 |||||||||||||||||||| Sbjct: 81391 gaagaagaaatgaagaaatg 81410
>gb|AC090518.2|AC090518 Homo sapiens chromosome 15 clone RP11-566D24 map 15q21.3, complete sequence Length = 188644 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 gaagaagaaatgaagaaatg 103 |||||||||||||||||||| Sbjct: 138966 gaagaagaaatgaagaaatg 138985
>gb|AC128656.9| Homo sapiens 3 BAC RP13-651H24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 80993 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 aagaagaaatgaagaaatgt 104 |||||||||||||||||||| Sbjct: 28731 aagaagaaatgaagaaatgt 28750
>emb|AL929502.10| Zebrafish DNA sequence from clone CH211-69G19 in linkage group 16, complete sequence Length = 165617 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 gtgaataaaatgtatatgta 164 |||||||||||||||||||| Sbjct: 11899 gtgaataaaatgtatatgta 11880
>dbj|AP003120.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-657K20, complete sequence Length = 189499 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 agtaaacagcaagtgaataaaatg 156 ||||||||||| |||||||||||| Sbjct: 80028 agtaaacagcaggtgaataaaatg 80005
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 tccggtgcgagaagtcgtgc 273 |||||||||||||||||||| Sbjct: 3187958 tccggtgcgagaagtcgtgc 3187977
>gb|AC140933.1| Gallus gallus BAC clone TAM31-60P10 from chromosome ul, complete sequence Length = 119242 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 agcaagtgaataaaatgtat 159 |||||||||||||||||||| Sbjct: 90860 agcaagtgaataaaatgtat 90879
>emb|BX465849.10| Zebrafish DNA sequence from clone DKEY-263L8 in linkage group 1, complete sequence Length = 136195 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 87 gaagaaatgaagaaatgtacatgc 110 |||||||||||||||||| ||||| Sbjct: 22721 gaagaaatgaagaaatgttcatgc 22744 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,475,480 Number of Sequences: 3902068 Number of extensions: 4475480 Number of successful extensions: 90233 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89874 Number of HSP's gapped (non-prelim): 352 length of query: 418 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 396 effective length of database: 17,147,199,772 effective search space: 6790291109712 effective search space used: 6790291109712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
