>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor|
            with BRCT domains 1)
          Length = 2089

 Score = 32.7 bits (73), Expect = 0.47
 Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
 Frame = +3

Query: 63   PQPTEQEVK-NTNRS*TRKTPHIAAGVLLILRASKSTSNRLDMFPRSSKCSGASRGNTDR 239
            P+PT Q  +  TNRS + KTP         L+ S ST   +   P S     A+RG TDR
Sbjct: 1426 PEPTSQATRGRTNRS-SVKTPETVVPTAPELQPSTSTDQPVTPEPTSQ----ATRGRTDR 1480

Query: 240  ---RKP*SLLCLKGITRKRLFPSQPIT---*SRTHRGRQKTHPV 353
               + P +++      +      QP+T    SRT RGR+    V
Sbjct: 1481 SSVKTPETVVPTAPELQASASTDQPVTSEPTSRTTRGRKNRSSV 1524

>MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1|
          Length = 2171

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
 Frame = +3

Query: 63   PQPTEQEVK-NTNRS*TRKTPHIAAGVLLILRASKSTSNRLDMFPRSSKCSGASRGNTDR 239
            P+PT Q  +  TNRS + KTP         L+ S ST   +   P S      +RG TDR
Sbjct: 1508 PEPTSQATRGRTNRS-SVKTPETVVPTAPELQPSTSTDQPVTPEPTSQ----VTRGRTDR 1562

Query: 240  ---RKP*SLLCLKGITRKRLFPSQPIT---*SRTHRGRQKTHPV 353
               + P +++      +      QP+T    SRT RGR+    V
Sbjct: 1563 SSVKTPETVVPTAPELQASASTDQPVTSEPTSRTTRGRKNRSSV 1606

>WDR20_HUMAN (Q8TBZ3) WD-repeat protein 20 (DMR protein)|
          Length = 569

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 258 LCLKGITRKRLFPSQPIT*SRTHRGRQKTHPVGPQSPP 371
           LCL  +T   LFP QP++ +RTH     T+ +   SPP
Sbjct: 378 LCLWDLTEDILFPHQPLSRARTH-----TNVMNATSPP 410

>MUP1_YEAST (P50276) High-affinity methionine permease|
          Length = 574

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 91  FFTSCSVGWGLFLFGQLYYNVFLVIW 14
           ++  C + WG+F FG +YY    V+W
Sbjct: 490 YWIHCVIAWGIFFFGGVYY----VVW 511

>DMRT1_HUMAN (Q9Y5R6) Doublesex- and mab-3-related transcription factor 1 (DM|
           domain expressed in testis protein 1)
          Length = 373

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +2

Query: 230 YRPPQTLISALPQRYYTEEAIPLPANHMKSNSSGSSKDAPGRATKSSSPFS 382
           Y PP  L  ++PQ +  E+A   P       S  SS+D+   +  SSSP S
Sbjct: 294 YPPPSYLGQSVPQFFTFEDAPSYPEARASVFSPPSSQDSGLVSLSSSSPIS 344

>DAPA_YERPS (Q668F7) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)|
          Length = 293

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 393 QLHIEKGEEDFVARPGASFDDPDEFDFM*LAGRGIASSV*YL*GKAEIRVC 241
           Q+ +   +EDF+   G   DD    DFM L G+G+ S    +  +  + +C
Sbjct: 172 QIQVLVDDEDFILLSG---DDASGLDFMQLGGKGVISVTANIAAREMVELC 219

>DAPA_YERPE (Q8ZCD0) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)|
          Length = 293

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 393 QLHIEKGEEDFVARPGASFDDPDEFDFM*LAGRGIASSV*YL*GKAEIRVC 241
           Q+ +   +EDF+   G   DD    DFM L G+G+ S    +  +  + +C
Sbjct: 172 QIQVLVDDEDFILLSG---DDASGLDFMQLGGKGVISVTANIAAREMVELC 219


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,076,767
Number of Sequences: 219361
Number of extensions: 1095550
Number of successful extensions: 3330
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3328
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)