ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart26d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_463924.1| Oryza sativa (japonica cultivar-group), mRNA 135 1e-28
2ref|XM_506695.1| PREDICTED Oryza sativa (japonica cultivar-group... 135 1e-28
3dbj|AB118008.1| Oryza sativa (japonica cultivar-group) bip121 mR... 135 1e-28
4dbj|AK106553.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
5dbj|AK073059.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
6gb|AY106311.1| Zea mays PCO117285 mRNA sequence 117 3e-23
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 113 5e-22
8dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic D... 113 5e-22
9ref|NM_180587.2| Arabidopsis thaliana unknown protein AT5G37475 ... 46 0.10
10gb|BT000459.1| Arabidopsis thaliana Unknown protein mRNA, comple... 46 0.10
11dbj|AK221903.1| Arabidopsis thaliana mRNA for hypothetical prote... 46 0.10
12emb|BX832550.1|CNS0A13Z Arabidopsis thaliana Full-length cDNA Co... 46 0.10
13emb|BX830736.1|CNS0A0TY Arabidopsis thaliana Full-length cDNA Co... 46 0.10
14emb|BX831991.1|CNS09YXF Arabidopsis thaliana Full-length cDNA Co... 46 0.10
15dbj|AK118365.1| Arabidopsis thaliana mRNA for (BT000459) Unknown... 46 0.10
16dbj|AP000607.2| Arabidopsis thaliana genomic DNA, chromosome 5, ... 46 0.10
17gb|BT001200.1| Arabidopsis thaliana Unknown protein mRNA, comple... 46 0.10
18ref|NM_105278.2| Arabidopsis thaliana unknown protein AT1G66070 ... 44 0.40
19gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete ... 44 0.40
20gb|AY091290.1| Arabidopsis thaliana unknown protein (At1g66070) ... 44 0.40
21gb|AY063794.1| Arabidopsis thaliana unknown protein (At1g66070) ... 44 0.40
22emb|BX088529.6| Zebrafish DNA sequence from clone CH211-286H12, ... 44 0.40
23emb|BX813540.1|CNS0ADHV Arabidopsis thaliana Full-length cDNA Co... 44 0.40
24gb|AC026480.6|AC026480 Arabidopsis thaliana chromosome 1 BAC F15... 44 0.40
25dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 44 0.40
26gb|AY089042.1| Arabidopsis thaliana clone 20812 mRNA, complete s... 44 0.40
27gb|L42023.1| Haemophilus influenzae Rd KW20, complete genome 44 0.40
28gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
29dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
30gb|AC120437.7| Mus musculus chromosome 5, clone RP24-571K14, com... 40 6.3
31gb|AC167972.3| Mus musculus BAC clone RP24-73H24 from chromosome... 40 6.3
32ref|XM_482576.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.3
33gb|AC124083.14| Mus musculus chromosome 5, clone RP24-400H4, com... 40 6.3
34gb|AC160864.9| Mus musculus 10 BAC RP23-425N2 (Roswell Park Canc... 40 6.3
35emb|CR956360.10| Pig DNA sequence from clone CH242-245E12 on chr... 40 6.3
36gb|AC126691.3| Mus musculus BAC clone RP23-221H11 from 14, compl... 40 6.3
37emb|Z99755.1|HS714B7 Human DNA sequence from clone CTA-714B7 on ... 40 6.3
38emb|AL365434.13| Human DNA sequence from clone RP11-236B18 on ch... 40 6.3
39emb|AL109936.11|HSJ1057J7 Human DNA sequence from clone RP5-1057... 40 6.3
40emb|CR388029.10| Zebrafish DNA sequence from clone CH211-214O13 ... 40 6.3
41gb|AC091158.11| Mus musculus Strain C57BL6/J chromosome 6 BAC, R... 40 6.3
42emb|BX546475.20| Zebrafish DNA sequence from clone CH211-263J13 ... 40 6.3
43emb|BX323462.11| Zebrafish DNA sequence from clone CH211-225F16 ... 40 6.3
44emb|CR381591.9| Zebrafish DNA sequence from clone CH211-177N5 in... 40 6.3
45gb|AC154413.3| Mus musculus BAC clone RP24-230J5 from chromosome... 40 6.3
46gb|AE014182.1| Mus musculus piebald deletion region section 10 o... 40 6.3
47gb|AC090014.10| Homo sapiens 12 BAC RP11-424B7 (Roswell Park Can... 40 6.3
48gb|AC079917.6| Homo sapiens chromosome 11, clone RP11-55I22, com... 40 6.3
49emb|BX572079.7| Zebrafish DNA sequence from clone DKEY-35L8 in l... 40 6.3
50emb|CR352799.1| Gallus gallus finished cDNA, clone ChEST439h6 40 6.3
51dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
52gb|AC142260.6| Mus musculus BAC clone RP24-508M8 from chromosome... 40 6.3
53gb|AY913765.1|AY913764S2 Gorilla gorilla ZFY (ZFY) gene, complet... 40 6.3
54gb|AC012361.10| Homo sapiens BAC clone RP11-348P18 from 2, compl... 40 6.3
55emb|BX571732.6| Zebrafish DNA sequence from clone DKEY-49H7 in l... 40 6.3
56emb|BX649385.8| Zebrafish DNA sequence from clone CH211-127M24 i... 40 6.3
57emb|BX324175.6| Zebrafish DNA sequence from clone DKEY-237M7 in ... 40 6.3
58dbj|AP005159.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
59dbj|AP004656.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
60emb|BX324180.4| Zebrafish DNA sequence from clone CH211-134O13 i... 40 6.3
61dbj|AK065062.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
62emb|BX255894.19| Zebrafish DNA sequence from clone CH211-251G8 i... 40 6.3
63emb|AL935049.19| Zebrafish DNA sequence from clone CH211-185K2 i... 40 6.3
64emb|AL928716.15| Zebrafish DNA sequence from clone DKEY-23K6 in ... 40 6.3
65emb|BX294165.10| Zebrafish DNA sequence from clone DKEYP-20E4 in... 40 6.3
66emb|AL845515.5| Mouse DNA sequence from clone RP23-256D19 on chr... 40 6.3
67emb|AL591606.4| Mouse DNA sequence from clone RP23-272O14 on chr... 40 6.3
68emb|AL833794.9| Mouse DNA sequence from clone RP23-401J24 on chr... 40 6.3
69gb|AC162924.5| Mus musculus BAC clone RP23-292J21 from chromosom... 40 6.3 
>ref|XM_463924.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1216

 Score =  135 bits (68), Expect = 1e-28
 Identities = 77/80 (96%)
 Strand = Plus / Minus

                                                                       
Query: 389 agctgcttcttttttgctcctcctttctttttgcctgctgcagcttctttctcagccttg 448
           ||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||
Sbjct: 825 agctgcttcttttttgccccttgtttctttttgcctgctgcagcttctttctcagccttg 766

                               
Query: 449 atcttttcattagcaattgc 468
           ||||||||||||||||||||
Sbjct: 765 atcttttcattagcaattgc 746
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>ref|XM_506695.1| PREDICTED Oryza sativa (japonica cultivar-group), P0575F10.1 mRNA
          Length = 1260

 Score =  135 bits (68), Expect = 1e-28
 Identities = 77/80 (96%)
 Strand = Plus / Minus

                                                                       
Query: 389 agctgcttcttttttgctcctcctttctttttgcctgctgcagcttctttctcagccttg 448
           ||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||
Sbjct: 853 agctgcttcttttttgccccttgtttctttttgcctgctgcagcttctttctcagccttg 794

                               
Query: 449 atcttttcattagcaattgc 468
           ||||||||||||||||||||
Sbjct: 793 atcttttcattagcaattgc 774
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>dbj|AB118008.1| Oryza sativa (japonica cultivar-group) bip121 mRNA for BRI1-KD
           interacting protein 121, partial cds
          Length = 637

 Score =  135 bits (68), Expect = 1e-28
 Identities = 77/80 (96%)
 Strand = Plus / Minus

                                                                       
Query: 389 agctgcttcttttttgctcctcctttctttttgcctgctgcagcttctttctcagccttg 448
           ||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||
Sbjct: 558 agctgcttcttttttgccccttgtttctttttgcctgctgcagcttctttctcagccttg 499

                               
Query: 449 atcttttcattagcaattgc 468
           ||||||||||||||||||||
Sbjct: 498 atcttttcattagcaattgc 479
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>dbj|AK106553.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-G08, full
           insert sequence
          Length = 1258

 Score =  135 bits (68), Expect = 1e-28
 Identities = 77/80 (96%)
 Strand = Plus / Minus

                                                                       
Query: 389 agctgcttcttttttgctcctcctttctttttgcctgctgcagcttctttctcagccttg 448
           ||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||
Sbjct: 851 agctgcttcttttttgccccttgtttctttttgcctgctgcagcttctttctcagccttg 792

                               
Query: 449 atcttttcattagcaattgc 468
           ||||||||||||||||||||
Sbjct: 791 atcttttcattagcaattgc 772
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>dbj|AK073059.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022F16, full
           insert sequence
          Length = 1216

 Score =  135 bits (68), Expect = 1e-28
 Identities = 77/80 (96%)
 Strand = Plus / Minus

                                                                       
Query: 389 agctgcttcttttttgctcctcctttctttttgcctgctgcagcttctttctcagccttg 448
           ||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||
Sbjct: 825 agctgcttcttttttgccccttgtttctttttgcctgctgcagcttctttctcagccttg 766

                               
Query: 449 atcttttcattagcaattgc 468
           ||||||||||||||||||||
Sbjct: 765 atcttttcattagcaattgc 746
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>gb|AY106311.1| Zea mays PCO117285 mRNA sequence
          Length = 897

 Score =  117 bits (59), Expect = 3e-23
 Identities = 95/107 (88%)
 Strand = Plus / Minus

                                                                       
Query: 362 aagtcctcctctcctttctctatatggagctgcttcttttttgctcctcctttctttttg 421
           ||||| || ||||||||||| || ||||| ||||||||||| ||||||  ||||||||||
Sbjct: 894 aagtcgtcgtctcctttctcgatgtggagttgcttctttttcgctccttgtttctttttg 835

                                                          
Query: 422 cctgctgcagcttctttctcagccttgatcttttcattagcaattgc 468
           ||||||||||| || ||||||||||||||||| || |||||||||||
Sbjct: 834 cctgctgcagcctccttctcagccttgatcttctcgttagcaattgc 788
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  113 bits (57), Expect = 5e-22
 Identities = 57/57 (100%)
 Strand = Plus / Plus

                                                                        
Query: 412     tttctttttgcctgctgcagcttctttctcagccttgatcttttcattagcaattgc 468
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1174433 tttctttttgcctgctgcagcttctttctcagccttgatcttttcattagcaattgc 1174489
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>dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0575F10
          Length = 150462

 Score =  113 bits (57), Expect = 5e-22
 Identities = 57/57 (100%)
 Strand = Plus / Plus

                                                                     
Query: 412  tttctttttgcctgctgcagcttctttctcagccttgatcttttcattagcaattgc 468
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5524 tttctttttgcctgctgcagcttctttctcagccttgatcttttcattagcaattgc 5580
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>ref|NM_180587.2| Arabidopsis thaliana unknown protein AT5G37475 mRNA, complete cds
          Length = 1105

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 413 ttctttttgcctgctgcagcttctttctcagcctt 447
           ||||||||||| || |||||||||||||| |||||
Sbjct: 776 ttctttttgccagcagcagcttctttctccgcctt 742
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>gb|BT000459.1| Arabidopsis thaliana Unknown protein mRNA, complete cds
          Length = 1082

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 413 ttctttttgcctgctgcagcttctttctcagcctt 447
           ||||||||||| || |||||||||||||| |||||
Sbjct: 756 ttctttttgccagcagcagcttctttctccgcctt 722
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>dbj|AK221903.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL22-33-H15
          Length = 478

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 413 ttctttttgcctgctgcagcttctttctcagcctt 447
           ||||||||||| || |||||||||||||| |||||
Sbjct: 171 ttctttttgccagcagcagcttctttctccgcctt 137
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>emb|BX832550.1|CNS0A13Z Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH7ZE06 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1012

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 413 ttctttttgcctgctgcagcttctttctcagcctt 447
           ||||||||||| || |||||||||||||| |||||
Sbjct: 747 ttctttttgccagcagcagcttctttctccgcctt 713
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>emb|BX830736.1|CNS0A0TY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS19ZB06 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1076

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 413 ttctttttgcctgctgcagcttctttctcagcctt 447
           ||||||||||| || |||||||||||||| |||||
Sbjct: 746 ttctttttgccagcagcagcttctttctccgcctt 712
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>emb|BX831991.1|CNS09YXF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH44ZF05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1018

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 413 ttctttttgcctgctgcagcttctttctcagcctt 447
           ||||||||||| || |||||||||||||| |||||
Sbjct: 746 ttctttttgccagcagcagcttctttctccgcctt 712
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>dbj|AK118365.1| Arabidopsis thaliana mRNA for (BT000459) Unknown protein
           [Arabidopsis thaliana], complete cds, clone:
           RAFL19-63-C21
          Length = 1076

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 413 ttctttttgcctgctgcagcttctttctcagcctt 447
           ||||||||||| || |||||||||||||| |||||
Sbjct: 776 ttctttttgccagcagcagcttctttctccgcctt 742
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>dbj|AP000607.2| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:T25O11
          Length = 48312

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 413   ttctttttgcctgctgcagcttctttctcagcctt 447
             ||||||||||| || |||||||||||||| |||||
Sbjct: 47030 ttctttttgccagcagcagcttctttctccgcctt 47064
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>gb|BT001200.1| Arabidopsis thaliana Unknown protein mRNA, complete cds
          Length = 854

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 413 ttctttttgcctgctgcagcttctttctcagcctt 447
           ||||||||||| || |||||||||||||| |||||
Sbjct: 584 ttctttttgccagcagcagcttctttctccgcctt 550
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>ref|NM_105278.2| Arabidopsis thaliana unknown protein AT1G66070 mRNA, complete cds
          Length = 1199

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 410 cctttctttttgcctgctgcagcttctttctcagcctt 447
           ||||||||||| || || |||||||||||||| |||||
Sbjct: 800 cctttcttttttcccgcagcagcttctttctctgcctt 763
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>gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete genome
          Length = 1913428

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 418    tttgcctgctgcagcttctttc 439
              ||||||||||||||||||||||
Sbjct: 715875 tttgcctgctgcagcttctttc 715854
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>gb|AY091290.1| Arabidopsis thaliana unknown protein (At1g66070) mRNA, complete cds
          Length = 712

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 410 cctttctttttgcctgctgcagcttctttctcagcctt 447
           ||||||||||| || || |||||||||||||| |||||
Sbjct: 590 cctttcttttttcccgcagcagcttctttctctgcctt 553
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>gb|AY063794.1| Arabidopsis thaliana unknown protein (At1g66070) mRNA, complete cds
          Length = 1175

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 410 cctttctttttgcctgctgcagcttctttctcagcctt 447
           ||||||||||| || || |||||||||||||| |||||
Sbjct: 800 cctttcttttttcccgcagcagcttctttctctgcctt 763
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>emb|BX088529.6| Zebrafish DNA sequence from clone CH211-286H12, complete sequence
          Length = 178667

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 87    aaaaacacaaacaggtcttgaacaagaaaa 116
             |||||||||||||||| | |||||||||||
Sbjct: 50231 aaaaacacaaacaggtttggaacaagaaaa 50260
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>emb|BX813540.1|CNS0ADHV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB23ZC01 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1362

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 410 cctttctttttgcctgctgcagcttctttctcagcctt 447
           ||||||||||| || || |||||||||||||| |||||
Sbjct: 975 cctttcttttttcccgcagcagcttctttctctgcctt 938
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>gb|AC026480.6|AC026480 Arabidopsis thaliana chromosome 1 BAC F15E12 genomic sequence, complete
             sequence
          Length = 90248

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 410   cctttctttttgcctgctgcagcttctttctcagcctt 447
             ||||||||||| || || |||||||||||||| |||||
Sbjct: 21953 cctttcttttttcccgcagcagcttctttctctgcctt 21990
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>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence
          Length = 3288558

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 417    ttttgcctgctgcagcttcttt 438
              ||||||||||||||||||||||
Sbjct: 851836 ttttgcctgctgcagcttcttt 851815
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>gb|AY089042.1| Arabidopsis thaliana clone 20812 mRNA, complete sequence
          Length = 1146

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 410 cctttctttttgcctgctgcagcttctttctcagcctt 447
           ||||||||||| || || |||||||||||||| |||||
Sbjct: 788 cctttcttttttcccgcagcagcttctttctctgcctt 751
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>gb|L42023.1| Haemophilus influenzae Rd KW20, complete genome
          Length = 1830138

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 418    tttgcctgctgcagcttctttc 439
              ||||||||||||||||||||||
Sbjct: 682406 tttgcctgctgcagcttctttc 682385
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>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0088M05, complete sequence
          Length = 153368

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 390   gctgcttcttttttgctcctcctttcttt 418
             ||||| ||||||||| |||||||||||||
Sbjct: 79970 gctgcctcttttttgttcctcctttcttt 79998
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 390      gctgcttcttttttgctcctcctttcttt 418
                ||||| ||||||||| |||||||||||||
Sbjct: 18286758 gctgcctcttttttgttcctcctttcttt 18286786
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>gb|AC120437.7| Mus musculus chromosome 5, clone RP24-571K14, complete sequence
          Length = 147493

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 365   tcctcctctcctttctctat 384
             ||||||||||||||||||||
Sbjct: 37847 tcctcctctcctttctctat 37866
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>gb|AC167972.3| Mus musculus BAC clone RP24-73H24 from chromosome 13, complete sequence
          Length = 224330

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 409   tcctttctttttgcctgctg 428
             ||||||||||||||||||||
Sbjct: 42284 tcctttctttttgcctgctg 42265
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>ref|XM_482576.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2052

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 387  ggagctgcttcttttttgct 406
            ||||||||||||||||||||
Sbjct: 1413 ggagctgcttcttttttgct 1432
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>gb|AC124083.14| Mus musculus chromosome 5, clone RP24-400H4, complete sequence
          Length = 172336

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     aacaagaagtaaaaaacaca 95
              ||||||||||||||||||||
Sbjct: 105451 aacaagaagtaaaaaacaca 105470
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>gb|AC160864.9| Mus musculus 10 BAC RP23-425N2 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 190336

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 402    ttgctcctcctttctttttg 421
              ||||||||||||||||||||
Sbjct: 110107 ttgctcctcctttctttttg 110088
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>emb|CR956360.10| Pig DNA sequence from clone CH242-245E12 on chromosome 7, complete
              sequence
          Length = 185507

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 359    acaaagtcctcctctccttt 378
              ||||||||||||||||||||
Sbjct: 109252 acaaagtcctcctctccttt 109271
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>gb|AC126691.3| Mus musculus BAC clone RP23-221H11 from 14, complete sequence
          Length = 208027

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 400   ttttgctcctcctttctttttgcc 423
             ||||||||||| ||||||||||||
Sbjct: 34320 ttttgctcctcttttctttttgcc 34343
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>emb|Z99755.1|HS714B7 Human DNA sequence from clone CTA-714B7 on chromosome 22q12.2-13.2,
             complete sequence
          Length = 98274

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 387   ggagctgcttcttttttgctcctcctttcttt 418
             ||||||||||| || | |||||||||||||||
Sbjct: 50035 ggagctgcttccttctggctcctcctttcttt 50004
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>emb|AL365434.13| Human DNA sequence from clone RP11-236B18 on chromosome 10 Contains
             three novel genes and a DEAD/H (Asp-Glu-Ala-Asp/His) box
             polypeptide 18 (Myc-regulated) (DDX18) pseudogene,
             complete sequence
          Length = 158357

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 384   tatggagctgcttctttttt 403
             ||||||||||||||||||||
Sbjct: 94792 tatggagctgcttctttttt 94773
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>emb|AL109936.11|HSJ1057J7 Human DNA sequence from clone RP5-1057J7 on chromosome 1 Contains a
             ribosomal protein L29 (RPL29) pseudogene, the HNRPR gene
             for heterogeneous nuclear ribonucleoprotein R, the ZNF436
             gene for zinc finger protein 436 (KIAA1710, FLJ35045), a
             novel gene (LOC148898), the 3' end of the TCEA3 gene for
             transcription elongation factor A (SII) 3 and a CpG
             island, complete sequence
          Length = 150285

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 394   cttcttttttgctcctcctttctttttg 421
             |||||||||| |||| ||||||||||||
Sbjct: 52115 cttctttttttctccccctttctttttg 52088
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>emb|CR388029.10| Zebrafish DNA sequence from clone CH211-214O13 in linkage group 14,
            complete sequence
          Length = 210704

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 360  caaagtcctcctctcctttc 379
            ||||||||||||||||||||
Sbjct: 9830 caaagtcctcctctcctttc 9811
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>gb|AC091158.11| Mus musculus Strain C57BL6/J chromosome 6 BAC, RP23-109E8, Complete
             Sequence, complete sequence
          Length = 195048

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 379   ctctatatggagctgcttcttttt 402
             |||||||||||||| |||||||||
Sbjct: 47889 ctctatatggagcttcttcttttt 47912
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>emb|BX546475.20| Zebrafish DNA sequence from clone CH211-263J13 in linkage group 14,
              complete sequence
          Length = 142158

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 360    caaagtcctcctctcctttc 379
              ||||||||||||||||||||
Sbjct: 126889 caaagtcctcctctcctttc 126908
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>emb|BX323462.11| Zebrafish DNA sequence from clone CH211-225F16 in linkage group 7,
             complete sequence
          Length = 85515

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 433   ttctttctcagccttgatct 452
             ||||||||||||||||||||
Sbjct: 31448 ttctttctcagccttgatct 31429
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>emb|CR381591.9| Zebrafish DNA sequence from clone CH211-177N5 in linkage group 20,
              complete sequence
          Length = 133452

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 80     agaagtaaaaaacacaaacaggtcttgaacaa 111
              ||||| || |||||||||||||| ||||||||
Sbjct: 120376 agaagaaagaaacacaaacaggttttgaacaa 120345
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>gb|AC154413.3| Mus musculus BAC clone RP24-230J5 from chromosome 13, complete sequence
          Length = 174730

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 409   tcctttctttttgcctgctg 428
             ||||||||||||||||||||
Sbjct: 41661 tcctttctttttgcctgctg 41680
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>gb|AE014182.1| Mus musculus piebald deletion region section 10 of 11 of the complete
              sequence
          Length = 400029

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 400    ttttgctcctcctttctttttgcc 423
              ||||||||||| ||||||||||||
Sbjct: 166456 ttttgctcctcttttctttttgcc 166479
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>gb|AC090014.10| Homo sapiens 12 BAC RP11-424B7 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 173480

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 410    cctttctttttgcctgctgc 429
              ||||||||||||||||||||
Sbjct: 144020 cctttctttttgcctgctgc 144001
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>gb|AC079917.6| Homo sapiens chromosome 11, clone RP11-55I22, complete sequence
          Length = 140542

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 382    tatatggagctgcttcttttttgc 405
              |||||||||||||||||| |||||
Sbjct: 108224 tatatggagctgcttcttctttgc 108247
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>emb|BX572079.7| Zebrafish DNA sequence from clone DKEY-35L8 in linkage group 15,
            complete sequence
          Length = 192849

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 447  tgatcttttcattagcaatt 466
            ||||||||||||||||||||
Sbjct: 5024 tgatcttttcattagcaatt 5043
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>emb|CR352799.1| Gallus gallus finished cDNA, clone ChEST439h6
          Length = 1383

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 206 gtgttcaggtgcttctcgag 225
           ||||||||||||||||||||
Sbjct: 385 gtgttcaggtgcttctcgag 366
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 387      ggagctgcttcttttttgct 406
                ||||||||||||||||||||
Sbjct: 21186246 ggagctgcttcttttttgct 21186265



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 76      aacaagaagtaaaaaacaca 95
               ||||||||||||||||||||
Sbjct: 5119907 aacaagaagtaaaaaacaca 5119926
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>gb|AC142260.6| Mus musculus BAC clone RP24-508M8 from chromosome 14, complete sequence
          Length = 148626

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 400    ttttgctcctcctttctttttgcc 423
              ||||||||||| ||||||||||||
Sbjct: 124094 ttttgctcctcttttctttttgcc 124117
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>gb|AY913765.1|AY913764S2 Gorilla gorilla ZFY (ZFY) gene, complete cds
          Length = 77986

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 387   ggagctgcttcttttttgctcctcctttcttt 418
             ||||||||||||||||| || | |||||||||
Sbjct: 51940 ggagctgcttctttttttcttcccctttcttt 51909
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>gb|AC012361.10| Homo sapiens BAC clone RP11-348P18 from 2, complete sequence
          Length = 207184

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 410    cctttctttttgcctgctgc 429
              ||||||||||||||||||||
Sbjct: 105838 cctttctttttgcctgctgc 105819
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>emb|BX571732.6| Zebrafish DNA sequence from clone DKEY-49H7 in linkage group 20,
             complete sequence
          Length = 87077

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 409   tcctttctttttgcctgctg 428
             ||||||||||||||||||||
Sbjct: 16342 tcctttctttttgcctgctg 16323
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>emb|BX649385.8| Zebrafish DNA sequence from clone CH211-127M24 in linkage group 20,
              complete sequence
          Length = 165089

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 89     aaacacaaacaggtcttgaacaag 112
              |||||||||||||| |||||||||
Sbjct: 142170 aaacacaaacaggttttgaacaag 142193
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>emb|BX324175.6| Zebrafish DNA sequence from clone DKEY-237M7 in linkage group 22,
              complete sequence
          Length = 222879

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 89     aaacacaaacaggtcttgaacaag 112
              |||||||||||||| |||||||||
Sbjct: 161427 aaacacaaacaggttttgaacaag 161450
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>dbj|AP005159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0016C11
          Length = 170723

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 387   ggagctgcttcttttttgct 406
             ||||||||||||||||||||
Sbjct: 12523 ggagctgcttcttttttgct 12542
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>dbj|AP004656.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0020B10
          Length = 136175

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    aacaagaagtaaaaaacaca 95
             ||||||||||||||||||||
Sbjct: 69671 aacaagaagtaaaaaacaca 69690
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>emb|BX324180.4| Zebrafish DNA sequence from clone CH211-134O13 in linkage group 22,
             complete sequence
          Length = 136724

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 89    aaacacaaacaggtcttgaacaag 112
             |||||||||||||| |||||||||
Sbjct: 59372 aaacacaaacaggttttgaacaag 59395
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>dbj|AK065062.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J16, full
            insert sequence
          Length = 2052

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 387  ggagctgcttcttttttgct 406
            ||||||||||||||||||||
Sbjct: 1413 ggagctgcttcttttttgct 1432
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>emb|BX255894.19| Zebrafish DNA sequence from clone CH211-251G8 in linkage group 19,
              complete sequence
          Length = 180950

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 89     aaacacaaacaggtcttgaacaag 112
              |||||||||||||| |||||||||
Sbjct: 143538 aaacacaaacaggttttgaacaag 143515
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>emb|AL935049.19| Zebrafish DNA sequence from clone CH211-185K2 in linkage group 20,
             complete sequence
          Length = 148715

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 409   tcctttctttttgcctgctg 428
             ||||||||||||||||||||
Sbjct: 73354 tcctttctttttgcctgctg 73373
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>emb|AL928716.15| Zebrafish DNA sequence from clone DKEY-23K6 in linkage group 20, complete
              sequence
          Length = 246647

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 409    tcctttctttttgcctgctg 428
              ||||||||||||||||||||
Sbjct: 137500 tcctttctttttgcctgctg 137481
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>emb|BX294165.10| Zebrafish DNA sequence from clone DKEYP-20E4 in linkage group 22,
             complete sequence
          Length = 125073

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 397   cttttttgctcctcctttcttttt 420
             |||||||| |||||||||||||||
Sbjct: 83143 cttttttgttcctcctttcttttt 83166
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>emb|AL845515.5| Mouse DNA sequence from clone RP23-256D19 on chromosome 2, complete
              sequence
          Length = 137431

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 380    tctatatggagctgcttctttttt 403
              ||||||||||||| ||||||||||
Sbjct: 133237 tctatatggagctacttctttttt 133214
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>emb|AL591606.4| Mouse DNA sequence from clone RP23-272O14 on chromosome 2, complete
            sequence
          Length = 179373

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 109  caagaaaaacgcctcacata 128
            ||||||||||||||||||||
Sbjct: 7351 caagaaaaacgcctcacata 7332
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>emb|AL833794.9| Mouse DNA sequence from clone RP23-401J24 on chromosome 2, complete
              sequence
          Length = 206549

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     ccaacccacagaacaagaag 84
              ||||||||||||||||||||
Sbjct: 156500 ccaacccacagaacaagaag 156519
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>gb|AC162924.5| Mus musculus BAC clone RP23-292J21 from chromosome 6, complete sequence
          Length = 179209

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 379    ctctatatggagctgcttcttttt 402
              |||||||||||||| |||||||||
Sbjct: 115910 ctctatatggagcttcttcttttt 115933


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,322,161
Number of Sequences: 3902068
Number of extensions: 5322161
Number of successful extensions: 190842
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 190462
Number of HSP's gapped (non-prelim): 380
length of query: 468
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 446
effective length of database: 17,147,199,772
effective search space: 7647651098312
effective search space used: 7647651098312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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