Clone Name | rbart26d04 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_189497.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 759 Score = 73.8 bits (37), Expect = 4e-10 Identities = 46/49 (93%) Strand = Plus / Minus Query: 342 tcagtactcggcggtggggagctgctcgtgcgggcgctggccgatgaag 390 |||||| ||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 759 tcagtagtcggcggtgggcagctggtcgtgcgggcgctggccgatgaag 711
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 73.8 bits (37), Expect = 4e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 342 tcagtactcggcggtggggagctgctcgtgcgggcgctggccgatgaag 390 |||||| ||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 43108668 tcagtagtcggcggtgggcagctggtcgtgcgggcgctggccgatgaag 43108716 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 283 ttctcaatctctcatggcgat 303 ||||||||||||||||||||| Sbjct: 3810439 ttctcaatctctcatggcgat 3810419
>dbj|AP003627.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0459B04 Length = 142475 Score = 73.8 bits (37), Expect = 4e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 342 tcagtactcggcggtggggagctgctcgtgcgggcgctggccgatgaag 390 |||||| ||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 105697 tcagtagtcggcggtgggcagctggtcgtgcgggcgctggccgatgaag 105745
>dbj|AK111768.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023066H10, full insert sequence Length = 1346 Score = 73.8 bits (37), Expect = 4e-10 Identities = 46/49 (93%) Strand = Plus / Minus Query: 342 tcagtactcggcggtggggagctgctcgtgcgggcgctggccgatgaag 390 |||||| ||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 783 tcagtagtcggcggtgggcagctggtcgtgcgggcgctggccgatgaag 735
>dbj|AK111747.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050B20, full insert sequence Length = 1149 Score = 73.8 bits (37), Expect = 4e-10 Identities = 46/49 (93%) Strand = Plus / Minus Query: 342 tcagtactcggcggtggggagctgctcgtgcgggcgctggccgatgaag 390 |||||| ||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 832 tcagtagtcggcggtgggcagctggtcgtgcgggcgctggccgatgaag 784
>dbj|AB114829.1| Oryza sativa (japonica cultivar-group) OsTIP1 mRNA for tonoplast intrinsic protein, complete cds Length = 970 Score = 73.8 bits (37), Expect = 4e-10 Identities = 46/49 (93%) Strand = Plus / Minus Query: 342 tcagtactcggcggtggggagctgctcgtgcgggcgctggccgatgaag 390 |||||| ||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 769 tcagtagtcggcggtgggcagctggtcgtgcgggcgctggccgatgaag 721
>gb|U92651.2|BOU92651 Brassica oleracea var. botrytis tonoplast intrinsic protein bobTIP26-1 mRNA, complete cds Length = 942 Score = 46.1 bits (23), Expect = 0.085 Identities = 29/31 (93%) Strand = Plus / Minus Query: 341 ttcagtactcggcggtggggagctgctcgtg 371 ||||||| ||||||||||||||||| ||||| Sbjct: 793 ttcagtagtcggcggtggggagctgttcgtg 763
>emb|AL117340.3|HSBA192P3 Human DNA sequence from clone RP11-192P3 on chromosome 10 Contains a novel gene, the 5' end of the TCF8 gene for transcription factor 8 (represses interleukin 2 expression) (BZP,ZEB,ZEB1,AREB6,ZFHEP,NIL-2A,ZFHX1A,NIL-2-A), a pseudogene similar to part of serine palmitoyltransferase, long chain base subunit 1 (SPTLC1) (HSAN, HSN1, LBC1, LCB1, SPT1, SPTI) and two CpG islands, complete sequence Length = 187517 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 193 cacacacagtttaccctgaatt 214 |||||||||||||||||||||| Sbjct: 184855 cacacacagtttaccctgaatt 184834
>gb|AF225898.1|AF225898 Homo sapiens BAC clone 13d21, complete sequence Length = 198084 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 193 cacacacagtttaccctgaatt 214 |||||||||||||||||||||| Sbjct: 67269 cacacacagtttaccctgaatt 67248
>gb|U86762.1|TAU86762 Triticum aestivum gamma-type tonoplast intrinsic protein mRNA, complete cds Length = 1133 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Minus Query: 342 tcagtactcggcggtggggagctgctcgtg 371 |||||| |||| |||||||||||||||||| Sbjct: 847 tcagtagtcggtggtggggagctgctcgtg 818
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 307 gcatggatgatcagaagagat 327 ||||||||||||||||||||| Sbjct: 1664674 gcatggatgatcagaagagat 1664654
>dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0089K24 Length = 154137 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 283 ttctcaatctctcatggcgat 303 ||||||||||||||||||||| Sbjct: 83981 ttctcaatctctcatggcgat 83961
>ref|XM_470213.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 753 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 344 agtactcggcggtggggagctgctcgtg 371 |||| |||| |||||||||||||||||| Sbjct: 751 agtagtcggtggtggggagctgctcgtg 724
>gb|AC168309.2| Mus musculus chromosome 1, clone wi1-2866I16, complete sequence Length = 40737 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 258 gatgacacgatgacacttgcttgatttc 285 ||||||| ||||||| |||||||||||| Sbjct: 2691 gatgacatgatgacaattgcttgatttc 2664
>gb|AC145376.3| Pan troglodytes BAC clone RP43-59A12 from 7, complete sequence Length = 221727 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 gatgacacgatgacacttgc 277 |||||||||||||||||||| Sbjct: 108005 gatgacacgatgacacttgc 107986
>gb|AC102374.7| Mus musculus chromosome 1, clone RP23-278G2, complete sequence Length = 170448 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 258 gatgacacgatgacacttgcttgatttc 285 ||||||| ||||||| |||||||||||| Sbjct: 25899 gatgacatgatgacaattgcttgatttc 25926
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 344 agtactcggcggtggggagctgctcgtg 371 |||| |||| |||||||||||||||||| Sbjct: 2544731 agtagtcggtggtggggagctgctcgtg 2544758
>ref|XM_386515.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG06339.1) partial mRNA Length = 1497 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 gcatggatgatcagaagaga 326 |||||||||||||||||||| Sbjct: 773 gcatggatgatcagaagaga 792
>gb|AF521135.1| Kandelia candel tonoplast intrinsic protein (TIP) mRNA, complete cds Length = 1099 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 gcggtggggagctgctcgtg 371 |||||||||||||||||||| Sbjct: 847 gcggtggggagctgctcgtg 828
>emb|AL355472.19| Human DNA sequence from clone RP5-827C21 on chromosome 1 Contains a ribosomal protein S15 (RPS15) pseudogene, three novel genes (LOC388753), the 3' end of the TARBP1 gene for TAR (HIV) RNA binding protein 1 and a CpG island, complete sequence Length = 92628 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 acaagagattattcctgactgact 192 ||||||| |||||||||||||||| Sbjct: 68131 acaagagcttattcctgactgact 68108
>gb|AC090498.4| Homo sapiens chromosome 7 clone RP11-84E17, complete sequence Length = 188036 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 gatgacacgatgacacttgc 277 |||||||||||||||||||| Sbjct: 67930 gatgacacgatgacacttgc 67911
>gb|AC083905.20| Homo sapiens 3 BAC RP11-124N24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 109471 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 actgatgacacgatgacact 274 |||||||||||||||||||| Sbjct: 67496 actgatgacacgatgacact 67515
>emb|X80266.1|HVGTIPP H.vulgare mRNA for gamma-TIP-like protein Length = 1020 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 344 agtactcggcggtggggagctgctcgtg 371 |||| |||| |||||||||||||||||| Sbjct: 814 agtagtcggtggtggggagctgctcgtg 787
>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii Length = 2037969 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 atggatgatcagaagagatt 328 |||||||||||||||||||| Sbjct: 1044394 atggatgatcagaagagatt 1044413
>emb|AJ242805.1|SST242805 Sporobolus stapfianus mRNA for putative gamma tonoplast intrinsic protein (TIP) Length = 1146 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 344 agtactcggcggtggggagctgctcgtg 371 |||| |||| |||||||||||||||||| Sbjct: 833 agtagtcggtggtggggagctgctcgtg 806
>emb|AL954726.31| Zebrafish DNA sequence from clone CH211-274A9 in linkage group 23, complete sequence Length = 164507 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 tttgtacaaacattaatctt 125 |||||||||||||||||||| Sbjct: 115044 tttgtacaaacattaatctt 115063
>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0067N01, from chromosome 3, complete sequence Length = 159636 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 344 agtactcggcggtggggagctgctcgtg 371 |||| |||| |||||||||||||||||| Sbjct: 125363 agtagtcggtggtggggagctgctcgtg 125336
>gb|AC160030.4| Mus musculus 10 BAC RP24-311K18 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 162351 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 attgctaggacagacagcag 104 |||||||||||||||||||| Sbjct: 21479 attgctaggacagacagcag 21460
>ref|XM_624903.1| PREDICTED: Apis mellifera similar to ENSANGP00000011065 (LOC552527), mRNA Length = 2879 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 9 aagaatgcttgtcatagatattat 32 |||||||||||||| ||||||||| Sbjct: 2067 aagaatgcttgtcacagatattat 2090
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 344 agtactcggcggtggggagctgctcgtg 371 |||| |||| |||||||||||||||||| Sbjct: 2544841 agtagtcggtggtggggagctgctcgtg 2544868
>dbj|AB206104.1| Mimosa pudica tip1;1 mRNA for tonoplast intrinsic protein 1;1, complete cds Length = 1067 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 344 agtactcggcggtggggagctgctcgtg 371 |||| |||| |||||||||||||||||| Sbjct: 824 agtaatcggtggtggggagctgctcgtg 797
>dbj|D25534.1|RICYK333 Oryza sativa yk333 mRNA for gamma-Tip, complete cds Length = 1080 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 344 agtactcggcggtggggagctgctcgtg 371 |||| |||| |||||||||||||||||| Sbjct: 829 agtagtcggtggtggggagctgctcgtg 802
>dbj|AK110727.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-170-E06, full insert sequence Length = 1024 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 344 agtactcggcggtggggagctgctcgtg 371 |||| |||| |||||||||||||||||| Sbjct: 182 agtagtcggtggtggggagctgctcgtg 209
>gb|AC009999.2|T20M3 Sequence of BAC T20M3 from Arabidopsis thaliana chromosome 1, complete sequence Length = 79554 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 gtacaaacattaatcttgac 128 |||||||||||||||||||| Sbjct: 5058 gtacaaacattaatcttgac 5039
>dbj|AK104123.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C12, full insert sequence Length = 1034 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 344 agtactcggcggtggggagctgctcgtg 371 |||| |||| |||||||||||||||||| Sbjct: 838 agtagtcggtggtggggagctgctcgtg 811
>dbj|AK068986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003E16, full insert sequence Length = 1082 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 344 agtactcggcggtggggagctgctcgtg 371 |||| |||| |||||||||||||||||| Sbjct: 840 agtagtcggtggtggggagctgctcgtg 813
>dbj|AK060994.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-E02, full insert sequence Length = 870 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 344 agtactcggcggtggggagctgctcgtg 371 |||| |||| |||||||||||||||||| Sbjct: 674 agtagtcggtggtggggagctgctcgtg 647
>dbj|AK059438.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-G11, full insert sequence Length = 551 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 344 agtactcggcggtggggagctgctcgtg 371 |||| |||| |||||||||||||||||| Sbjct: 364 agtagtcggtggtggggagctgctcgtg 337
>dbj|AK058322.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B06, full insert sequence Length = 1055 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 344 agtactcggcggtggggagctgctcgtg 371 |||| |||| |||||||||||||||||| Sbjct: 836 agtagtcggtggtggggagctgctcgtg 809 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,685,866 Number of Sequences: 3902068 Number of extensions: 3685866 Number of successful extensions: 63925 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63777 Number of HSP's gapped (non-prelim): 148 length of query: 391 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 369 effective length of database: 17,147,199,772 effective search space: 6327316715868 effective search space used: 6327316715868 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)