ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart26d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DFG16_YEAST (Q99234) Protein DFG16 (Extracellular matrix protein... 29 4.0
2LACY_KLEPN (P59832) Lactose permease (Lactose-proton symport) (F... 28 8.8

>DFG16_YEAST (Q99234) Protein DFG16 (Extracellular matrix protein 41)|
           (Zinc-regulated gene 11 protein)
          Length = 619

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 13  KNLLIMSIYMPYFAL*IYTINSTLKLPSPHIFFSSSNFAHVLLP 144
           KNL+++ ++     L IYTI       S   +F+  NFA++LLP
Sbjct: 315 KNLVVLKVFYKLIELLIYTI-----FISIICYFTWHNFAYILLP 353



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>LACY_KLEPN (P59832) Lactose permease (Lactose-proton symport) (Fragment)|
          Length = 131

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 25  IMSIYMPYFAL*IYTINSTLKLPSPHIFFSSSNFAHVLLP 144
           IMS Y P+F + +  +N   K  +  +F S S FA +  P
Sbjct: 27  IMSAYFPFFPVWLADVNHLTKTETGIVFSSISLFAIIFQP 66


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,825,483
Number of Sequences: 219361
Number of extensions: 400283
Number of successful extensions: 905
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 80,573,946
effective HSP length: 33
effective length of database: 73,335,033
effective search space used: 1760040792
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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