ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart26c09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018091.1| Zea mays clone EL01N0552D12.c mRNA sequence 232 9e-58
2gb|AY110106.1| Zea mays CL19333_1 mRNA sequence 212 8e-52
3ref|XM_480900.1| Oryza sativa (japonica cultivar-group), mRNA 176 5e-41
4gb|AY022255.1| Oryza sativa microsatellite MRG4580 containing (T... 96 1e-16
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
6dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
7dbj|AP004657.2| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
8gb|AC146743.11| Medicago truncatula clone mth2-12k22, complete s... 56 1e-04
9ref|NM_127767.1| Arabidopsis thaliana unknown protein AT2G21980 ... 52 0.002
10gb|AC007019.5| Arabidopsis thaliana chromosome 2 clone F7D8 map ... 52 0.002
11emb|AL808142.6| Mouse DNA sequence from clone RP23-84B8 on chrom... 44 0.44
12emb|AL136998.36| Mouse DNA sequence from clone RP21-509E24 on ch... 44 0.44
13gb|AY566990.1| Nicotiana clevelandii chloroplast glutamine synth... 42 1.7
14gb|AY568083.1| Nicotiana trigonophylla chloroplast glutamine syn... 42 1.7
15emb|AL162398.34| Human DNA sequence from clone RP11-29E9 on chro... 42 1.7
16gb|AC161471.3| Gallus gallus BAC clone CH261-21B3 from chromosom... 42 1.7
17gb|AC090916.3| Homo sapiens chromosome 18, clone RP11-862C6, com... 42 1.7
18gb|AC100795.2| Homo sapiens chromosome 18, clone RP11-956K8, com... 42 1.7
19gb|AC046202.5| Homo sapiens chromosome 18, clone RP11-318I15, co... 42 1.7
20ref|NM_001036447.1| Arabidopsis thaliana unknown protein AT2G413... 40 6.9
21ref|NM_129698.1| Arabidopsis thaliana unknown protein AT2G41350 ... 40 6.9
22gb|AY738117.1| Homo sapiens matrix metalloproteinase 2 (gelatina... 40 6.9
23gb|BT015461.1| Arabidopsis thaliana At2g41350 mRNA sequence 40 6.9
24gb|AC153972.6| Mus musculus 10 BAC RP24-383P4 (Roswell Park Canc... 40 6.9
25emb|AL450332.19| Human DNA sequence from clone RP11-138M12 on ch... 40 6.9
26gb|AY143923.1| Arabidopsis thaliana At2g41350/F13H10.10 mRNA, co... 40 6.9
27emb|AL355853.22| Human DNA sequence from clone RP11-36B21 on chr... 40 6.9
28emb|AL035666.7|HS730D4 Human DNA sequence from clone RP4-730D4 o... 40 6.9
29emb|CR354401.17| Zebrafish DNA sequence from clone CH211-101C7 i... 40 6.9
30emb|CR751548.7| Zebrafish DNA sequence from clone CH211-62L13 in... 40 6.9
31gb|AC024106.14| Homo sapiens 3 BAC RP11-33K7 (Roswell Park Cance... 40 6.9
32gb|AF441843.1| Plasmodium falciparum isolate 2H3 erythrocyte mem... 40 6.9
33gb|AF441842.1| Plasmodium falciparum isolate BM012 erythrocyte m... 40 6.9
34gb|AF441839.1| Plasmodium falciparum isolate BM017 erythrocyte m... 40 6.9
35gb|AF441837.1| Plasmodium falciparum isolate BM028 erythrocyte m... 40 6.9
36gb|AF441836.1| Plasmodium falciparum isolate BM034 erythrocyte m... 40 6.9
37gb|AY075602.1| Arabidopsis thaliana At2g41350/F13H10.10 mRNA, co... 40 6.9
38gb|AF458894.1| Plasmodium falciparum TM4C8 erythrocyte membrane ... 40 6.9
39gb|AF458893.1| Plasmodium falciparum M58 erythrocyte membrane pr... 40 6.9
40gb|AF458892.1| Plasmodium falciparum M57 erythrocyte membrane pr... 40 6.9
41gb|AF458891.1| Plasmodium falciparum K117 erythrocyte membrane p... 40 6.9
42gb|AF458890.1| Plasmodium falciparum M48 erythrocyte membrane pr... 40 6.9
43gb|AF458889.1| Plasmodium falciparum S120 erythrocyte membrane p... 40 6.9
44gb|AF458888.1| Plasmodium falciparum T9/96 erythrocyte membrane ... 40 6.9
45gb|AF458886.1| Plasmodium falciparum 7G8 erythrocyte membrane pr... 40 6.9
46gb|AC091198.6| Homo sapiens chromosome 18, clone RP11-258B16, co... 40 6.9
47gb|AC092352.2| Homo sapiens chromosome 16 clone RP11-2M17, compl... 40 6.9
48gb|AC128690.5| Homo sapiens 3 BAC RP11-399P20 (Roswell Park Canc... 40 6.9
49gb|AC159504.5| Mus musculus 10 BAC RP23-302J6 (Roswell Park Canc... 40 6.9
50dbj|AK047558.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 40 6.9
51gb|AC007336.6| Homo sapiens chromosome 16 clone RP11-212I21, com... 40 6.9
52gb|AC009492.4| Homo sapiens BAC clone RP11-423F9 from 2, complet... 40 6.9
53gb|AY084814.1| Arabidopsis thaliana clone 11854 mRNA, complete s... 40 6.9
54emb|CR545464.8| Zebrafish DNA sequence from clone CH211-270H14 i... 40 6.9
55emb|BX255922.4| Zebrafish DNA sequence from clone CH211-125A15 i... 40 6.9
56gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23... 40 6.9
57emb|AL607088.26| Mouse DNA sequence from clone RP23-13A13 on chr... 40 6.9
58emb|AL772261.5| Mouse DNA sequence from clone RP23-276J11 on chr... 40 6.9
59emb|AJ420411.1|PFA420411 Plasmodium falciparum partial TM180var2... 40 6.9 
>gb|BT018091.1| Zea mays clone EL01N0552D12.c mRNA sequence
          Length = 1282

 Score =  232 bits (117), Expect = 9e-58
 Identities = 186/209 (88%)
 Strand = Plus / Minus

                                                                       
Query: 299 gttaaagcagattgcaacacatcttcaaggtacttctctgcagctgtatactgcctcttt 358
           |||| ||||||||||||||||||||| |||||||||||||| |||| |||||||||||||
Sbjct: 948 gttagagcagattgcaacacatcttctaggtacttctctgcggctgcatactgcctcttt 889

                                                                       
Query: 359 ttgtcctctatagctaacgcagcgagagctttatctggaggcaaatcctggtagctacgt 418
           ||||||||||||||||  ||||| | |||||  |||||||| |||||||||||||| | |
Sbjct: 888 ttgtcctctatagctagtgcagctaaagcttattctggaggtaaatcctggtagctcctt 829

                                                                       
Query: 419 aatgtgtcggcaatgggtttagttttcctctcaagatccttcttgtgttccgccatttcc 478
           |||||||| || ||||||||||| |||||||| ||||||||||| || || |||||||||
Sbjct: 828 aatgtgtcagctatgggtttagtcttcctctcgagatccttcttatgctcagccatttcc 769

                                        
Query: 479 atcaacacacaatgattaatttctggcgt 507
           |||||||||| |||||| || ||||||||
Sbjct: 768 atcaacacaccatgattgatctctggcgt 740
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>gb|AY110106.1| Zea mays CL19333_1 mRNA sequence
          Length = 553

 Score =  212 bits (107), Expect = 8e-52
 Identities = 180/206 (87%)
 Strand = Plus / Plus

                                                                       
Query: 299 gttaaagcagattgcaacacatcttcaaggtacttctctgcagctgtatactgcctcttt 358
           |||| ||||||||||||||||||||| |||||||||||||| |||| ||||||||||   
Sbjct: 224 gttagagcagattgcaacacatcttctaggtacttctctgcggctgcatactgcctcnnn 283

                                                                       
Query: 359 ttgtcctctatagctaacgcagcgagagctttatctggaggcaaatcctggtagctacgt 418
             ||||||||||||||  ||||| | ||||||||||||||| |||||||||||||| | |
Sbjct: 284 nngtcctctatagctagtgcagctaaagctttatctggaggtaaatcctggtagctcctt 343

                                                                       
Query: 419 aatgtgtcggcaatgggtttagttttcctctcaagatccttcttgtgttccgccatttcc 478
           |||||||| || ||||||||||| |||||||| ||||||||||| || || |||||||||
Sbjct: 344 aatgtgtcagctatgggtttagtcttcctctcgagatccttcttatgctcagccatttcc 403

                                     
Query: 479 atcaacacacaatgattaatttctgg 504
           |||||||||| |||||| || |||||
Sbjct: 404 atcaacacaccatgattgatctctgg 429
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>ref|XM_480900.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1044

 Score =  176 bits (89), Expect = 5e-41
 Identities = 182/213 (85%)
 Strand = Plus / Minus

                                                                        
Query: 283  tcatagaccaggtgttgttaaagcagattgcaacacatcttcaaggtacttctctgcagc 342
            |||||| |||||||| ||||| ||||| || ||||||||||| || ||||||||||| ||
Sbjct: 1044 tcataggccaggtgtggttaatgcagactgtaacacatcttccagatacttctctgccgc 985

                                                                        
Query: 343  tgtatactgcctctttttgtcctctatagctaacgcagcgagagctttatctggaggcaa 402
             | |||||| || |||||||||||||||||||  || || |||||||| ||||| |||||
Sbjct: 984  cgcatactgtctttttttgtcctctatagctagagctgctagagctttgtctggtggcaa 925

                                                                        
Query: 403  atcctggtagctacgtaatgtgtcggcaatgggtttagttttcctctcaagatccttctt 462
             ||||||||||| |  |||||||| |||||||||||||| || ||||| |||||||||||
Sbjct: 924  gtcctggtagcttctcaatgtgtctgcaatgggtttagtctttctctctagatccttctt 865

                                             
Query: 463  gtgttccgccatttccatcaacacacaatgatt 495
             || || ||||||||||||| ||||| ||||||
Sbjct: 864  atgctctgccatttccatcagcacaccatgatt 832
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>gb|AY022255.1| Oryza sativa microsatellite MRG4580 containing (TG)X22, genomic
           sequence
          Length = 244

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                       
Query: 279 cacatcatagaccaggtgttgttaaagcagattgcaacacatcttcaaggtacttctctg 338
           |||||||||| |||||||| ||||| ||||| || ||||||||||| || ||||||||||
Sbjct: 104 cacatcataggccaggtgtggttaatgcagactgtaacacatcttccagatacttctctg 45

                                               
Query: 339 cagctgtatactgcctctttttgtcctctatagcta 374
           | || | |||||| || |||||||||||||||||||
Sbjct: 44  ccgccgcatactgtctttttttgtcctctatagcta 9
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 84/96 (87%)
 Strand = Plus / Plus

                                                                           
Query: 279     cacatcatagaccaggtgttgttaaagcagattgcaacacatcttcaaggtacttctctg 338
               |||||||||| |||||||| ||||| ||||| || ||||||||||| || ||||||||||
Sbjct: 8491324 cacatcataggccaggtgtggttaatgcagactgtaacacatcttccagatacttctctg 8491383

                                                   
Query: 339     cagctgtatactgcctctttttgtcctctatagcta 374
               | || | |||||| || |||||||||||||||||||
Sbjct: 8491384 ccgccgcatactgtctttttttgtcctctatagcta 8491419



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 89/103 (86%)
 Strand = Plus / Plus

                                                                           
Query: 393     ctggaggcaaatcctggtagctacgtaatgtgtcggcaatgggtttagttttcctctcaa 452
               |||| ||||| ||||||||||| |  |||||||| |||||||||||||| || ||||| |
Sbjct: 8491522 ctggtggcaagtcctggtagcttctcaatgtgtctgcaatgggtttagtctttctctcta 8491581

                                                          
Query: 453     gatccttcttgtgttccgccatttccatcaacacacaatgatt 495
               |||||||||| || || ||||||||||||| ||||| ||||||
Sbjct: 8491582 gatccttcttatgctctgccatttccatcagcacaccatgatt 8491624
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>dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OSJNBa0087F21
          Length = 187401

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 84/96 (87%)
 Strand = Plus / Plus

                                                                        
Query: 279  cacatcatagaccaggtgttgttaaagcagattgcaacacatcttcaaggtacttctctg 338
            |||||||||| |||||||| ||||| ||||| || ||||||||||| || ||||||||||
Sbjct: 3235 cacatcataggccaggtgtggttaatgcagactgtaacacatcttccagatacttctctg 3294

                                                
Query: 339  cagctgtatactgcctctttttgtcctctatagcta 374
            | || | |||||| || |||||||||||||||||||
Sbjct: 3295 ccgccgcatactgtctttttttgtcctctatagcta 3330



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 89/103 (86%)
 Strand = Plus / Plus

                                                                        
Query: 393  ctggaggcaaatcctggtagctacgtaatgtgtcggcaatgggtttagttttcctctcaa 452
            |||| ||||| ||||||||||| |  |||||||| |||||||||||||| || ||||| |
Sbjct: 3433 ctggtggcaagtcctggtagcttctcaatgtgtctgcaatgggtttagtctttctctcta 3492

                                                       
Query: 453  gatccttcttgtgttccgccatttccatcaacacacaatgatt 495
            |||||||||| || || ||||||||||||| ||||| ||||||
Sbjct: 3493 gatccttcttatgctctgccatttccatcagcacaccatgatt 3535
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>dbj|AP004657.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0031C02
          Length = 138843

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 84/96 (87%)
 Strand = Plus / Plus

                                                                         
Query: 279   cacatcatagaccaggtgttgttaaagcagattgcaacacatcttcaaggtacttctctg 338
             |||||||||| |||||||| ||||| ||||| || ||||||||||| || ||||||||||
Sbjct: 20867 cacatcataggccaggtgtggttaatgcagactgtaacacatcttccagatacttctctg 20926

                                                 
Query: 339   cagctgtatactgcctctttttgtcctctatagcta 374
             | || | |||||| || |||||||||||||||||||
Sbjct: 20927 ccgccgcatactgtctttttttgtcctctatagcta 20962



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 89/103 (86%)
 Strand = Plus / Plus

                                                                         
Query: 393   ctggaggcaaatcctggtagctacgtaatgtgtcggcaatgggtttagttttcctctcaa 452
             |||| ||||| ||||||||||| |  |||||||| |||||||||||||| || ||||| |
Sbjct: 21065 ctggtggcaagtcctggtagcttctcaatgtgtctgcaatgggtttagtctttctctcta 21124

                                                        
Query: 453   gatccttcttgtgttccgccatttccatcaacacacaatgatt 495
             |||||||||| || || ||||||||||||| ||||| ||||||
Sbjct: 21125 gatccttcttatgctctgccatttccatcagcacaccatgatt 21167
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>gb|AC146743.11| Medicago truncatula clone mth2-12k22, complete sequence
          Length = 116419

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 70/84 (83%)
 Strand = Plus / Minus

                                                                         
Query: 310   ttgcaacacatcttcaaggtacttctctgcagctgtatactgcctctttttgtcctctat 369
             |||||| |||||||||||   |||||| ||||| | ||||||||| ||||| || || ||
Sbjct: 91538 ttgcaatacatcttcaagacgcttctcagcagcggcatactgcctttttttatcttcaat 91479

                                     
Query: 370   agctaacgcagcgagagctttatc 393
              ||||| ||||| |||||||||||
Sbjct: 91478 tgctaaggcagccagagctttatc 91455
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>ref|NM_127767.1| Arabidopsis thaliana unknown protein AT2G21980 mRNA, complete cds
          Length = 180

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 385 agctttatctggaggcaaatcctggtagct 414
           ||||||||| ||||||||||||||||||||
Sbjct: 90  agctttatccggaggcaaatcctggtagct 61
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>gb|AC007019.5| Arabidopsis thaliana chromosome 2 clone F7D8 map mi238, complete
             sequence
          Length = 107848

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 385   agctttatctggaggcaaatcctggtagct 414
             ||||||||| ||||||||||||||||||||
Sbjct: 89895 agctttatccggaggcaaatcctggtagct 89924
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>emb|AL808142.6| Mouse DNA sequence from clone RP23-84B8 on chromosome X, complete
             sequence
          Length = 61415

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 11    catgcccattcaaaatcaaaagtgtg 36
             |||||||||||||||||| |||||||
Sbjct: 35871 catgcccattcaaaatcagaagtgtg 35896
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>emb|AL136998.36| Mouse DNA sequence from clone RP21-509E24 on chromosome X, complete
            sequence
          Length = 188218

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 11   catgcccattcaaaatcaaaagtgtg 36
            |||||||||||||||||| |||||||
Sbjct: 5074 catgcccattcaaaatcagaagtgtg 5099
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>gb|AY566990.1| Nicotiana clevelandii chloroplast glutamine synthetase 1 gene,
           partial cds; nuclear gene for chloroplast product
          Length = 625

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 178 acaacttccaagaaaatgaat 198
           |||||||||||||||||||||
Sbjct: 333 acaacttccaagaaaatgaat 353
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>gb|AY568083.1| Nicotiana trigonophylla chloroplast glutamine synthetase gene,
           partial cds; nuclear gene for chloroplast product
          Length = 862

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 178 acaacttccaagaaaatgaat 198
           |||||||||||||||||||||
Sbjct: 389 acaacttccaagaaaatgaat 409
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>emb|AL162398.34| Human DNA sequence from clone RP11-29E9 on chromosome 1, complete
             sequence
          Length = 32932

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 80    tgcctattctctctgatgata 100
             |||||||||||||||||||||
Sbjct: 10987 tgcctattctctctgatgata 10967
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>gb|AC161471.3| Gallus gallus BAC clone CH261-21B3 from chromosome ul, complete sequence
          Length = 205759

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 441    ttttcctctcaagatccttct 461
              |||||||||||||||||||||
Sbjct: 177881 ttttcctctcaagatccttct 177861
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>gb|AC090916.3| Homo sapiens chromosome 18, clone RP11-862C6, complete sequence
          Length = 197963

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 71   ctgaggaagtgcctattctct 91
            |||||||||||||||||||||
Sbjct: 3865 ctgaggaagtgcctattctct 3885
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>gb|AC100795.2| Homo sapiens chromosome 18, clone RP11-956K8, complete sequence
          Length = 193569

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 71    ctgaggaagtgcctattctct 91
             |||||||||||||||||||||
Sbjct: 28125 ctgaggaagtgcctattctct 28105
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>gb|AC046202.5| Homo sapiens chromosome 18, clone RP11-318I15, complete sequence
          Length = 179210

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 71     ctgaggaagtgcctattctct 91
              |||||||||||||||||||||
Sbjct: 118833 ctgaggaagtgcctattctct 118813
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>ref|NM_001036447.1| Arabidopsis thaliana unknown protein AT2G41350 transcript variant
            AT2G41350.2 mRNA, complete cds
          Length = 1115

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 80/100 (80%)
 Strand = Plus / Minus

                                                                        
Query: 320  tcttcaaggtacttctctgcagctgtatactgcctctttttgtcctctatagctaacgca 379
            ||||| || ||||| || || |||||| |||| || || ||||| || || ||||  |||
Sbjct: 1078 tcttctagatacttttccgcggctgtaaactgtcttttcttgtcttcgattgctagtgca 1019

                                                    
Query: 380  gcgagagctttatctggaggcaaatcctggtagctacgta 419
            || | |||||| || ||||| |||||||||||||| ||||
Sbjct: 1018 gctaaagctttgtccggaggtaaatcctggtagcttcgta 979
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>ref|NM_129698.1| Arabidopsis thaliana unknown protein AT2G41350 transcript variant
            AT2G41350.1 mRNA, complete cds
          Length = 1217

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 80/100 (80%)
 Strand = Plus / Minus

                                                                        
Query: 320  tcttcaaggtacttctctgcagctgtatactgcctctttttgtcctctatagctaacgca 379
            ||||| || ||||| || || |||||| |||| || || ||||| || || ||||  |||
Sbjct: 1084 tcttctagatacttttccgcggctgtaaactgtcttttcttgtcttcgattgctagtgca 1025

                                                    
Query: 380  gcgagagctttatctggaggcaaatcctggtagctacgta 419
            || | |||||| || ||||| |||||||||||||| ||||
Sbjct: 1024 gctaaagctttgtccggaggtaaatcctggtagcttcgta 985
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>gb|AY738117.1| Homo sapiens matrix metalloproteinase 2 (gelatinase A, 72kDa
             gelatinase, 72kDa type IV collagenase) (MMP2) gene,
             complete cds
          Length = 31017

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 327   ggtacttctctgcagctgta 346
             ||||||||||||||||||||
Sbjct: 24056 ggtacttctctgcagctgta 24037
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>gb|BT015461.1| Arabidopsis thaliana At2g41350 mRNA sequence
          Length = 897

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 80/100 (80%)
 Strand = Plus / Minus

                                                                       
Query: 320 tcttcaaggtacttctctgcagctgtatactgcctctttttgtcctctatagctaacgca 379
           ||||| || ||||| || || |||||| |||| || || ||||| || || ||||  |||
Sbjct: 860 tcttctagatacttttccgcggctgtaaactgtcttttcttgtcttcgattgctagtgca 801

                                                   
Query: 380 gcgagagctttatctggaggcaaatcctggtagctacgta 419
           || | |||||| || ||||| |||||||||||||| ||||
Sbjct: 800 gctaaagctttgtccggaggtaaatcctggtagcttcgta 761
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>gb|AC153972.6| Mus musculus 10 BAC RP24-383P4 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 182933

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    tttcaatgattaaatttgtt 125
              ||||||||||||||||||||
Sbjct: 146562 tttcaatgattaaatttgtt 146543
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>emb|AL450332.19| Human DNA sequence from clone RP11-138M12 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 174678

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 80    tgcctattctctctgatgatattt 103
             ||||||||| ||||||||||||||
Sbjct: 12389 tgcctattcactctgatgatattt 12412
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>gb|AY143923.1| Arabidopsis thaliana At2g41350/F13H10.10 mRNA, complete cds
          Length = 897

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 80/100 (80%)
 Strand = Plus / Minus

                                                                       
Query: 320 tcttcaaggtacttctctgcagctgtatactgcctctttttgtcctctatagctaacgca 379
           ||||| || ||||| || || |||||| |||| || || ||||| || || ||||  |||
Sbjct: 860 tcttctagatacttttccgcggctgtaaactgtcttttcttgtcttcgattgctagtgca 801

                                                   
Query: 380 gcgagagctttatctggaggcaaatcctggtagctacgta 419
           || | |||||| || ||||| |||||||||||||| ||||
Sbjct: 800 gctaaagctttgtccggaggtaaatcctggtagcttcgta 761
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>emb|AL355853.22| Human DNA sequence from clone RP11-36B21 on chromosome 13, complete
             sequence
          Length = 146641

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 490   atgattaatttctggcgtgt 509
             ||||||||||||||||||||
Sbjct: 59703 atgattaatttctggcgtgt 59722
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>emb|AL035666.7|HS730D4 Human DNA sequence from clone RP4-730D4 on chromosome 20q12 Contains a
             pseudogene similar to part of ATP synthase, H+
             transporting, mitochondrial F1 complex, O subunit)
             (oligomycin sensitivity conferring protein) (ATP5O),
             complete sequence
          Length = 47334

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 295   tgttgttaaagcagattgca 314
             ||||||||||||||||||||
Sbjct: 18982 tgttgttaaagcagattgca 18963
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>emb|CR354401.17| Zebrafish DNA sequence from clone CH211-101C7 in linkage group 12,
              complete sequence
          Length = 168372

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    gtttcaatgattaaatttgt 124
              ||||||||||||||||||||
Sbjct: 162115 gtttcaatgattaaatttgt 162096
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>emb|CR751548.7| Zebrafish DNA sequence from clone CH211-62L13 in linkage group 20,
             complete sequence
          Length = 64164

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   gtttcaatgattaaatttgt 124
             ||||||||||||||||||||
Sbjct: 14587 gtttcaatgattaaatttgt 14606
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>gb|AC024106.14| Homo sapiens 3 BAC RP11-33K7 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 157523

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    atagaccaggtgttgttaaa 304
              ||||||||||||||||||||
Sbjct: 123775 atagaccaggtgttgttaaa 123794
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>gb|AF441843.1| Plasmodium falciparum isolate 2H3 erythrocyte membrane protein 1
           (var) mRNA, partial cds
          Length = 564

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 aactttgcatttagtcaaac 269
           ||||||||||||||||||||
Sbjct: 72  aactttgcatttagtcaaac 53
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>gb|AF441842.1| Plasmodium falciparum isolate BM012 erythrocyte membrane protein 1
           (var) gene, partial cds
          Length = 564

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 aactttgcatttagtcaaac 269
           ||||||||||||||||||||
Sbjct: 72  aactttgcatttagtcaaac 53
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>gb|AF441839.1| Plasmodium falciparum isolate BM017 erythrocyte membrane protein 1
           (var) gene, partial cds
          Length = 564

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 aactttgcatttagtcaaac 269
           ||||||||||||||||||||
Sbjct: 72  aactttgcatttagtcaaac 53
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>gb|AF441837.1| Plasmodium falciparum isolate BM028 erythrocyte membrane protein 1
           (var) gene, partial cds
          Length = 564

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 aactttgcatttagtcaaac 269
           ||||||||||||||||||||
Sbjct: 72  aactttgcatttagtcaaac 53
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>gb|AF441836.1| Plasmodium falciparum isolate BM034 erythrocyte membrane protein 1
           (var) gene, partial cds
          Length = 564

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 aactttgcatttagtcaaac 269
           ||||||||||||||||||||
Sbjct: 72  aactttgcatttagtcaaac 53
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>gb|AY075602.1| Arabidopsis thaliana At2g41350/F13H10.10 mRNA, complete cds
          Length = 1201

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 80/100 (80%)
 Strand = Plus / Minus

                                                                        
Query: 320  tcttcaaggtacttctctgcagctgtatactgcctctttttgtcctctatagctaacgca 379
            ||||| || ||||| || || |||||| |||| || || ||||| || || ||||  |||
Sbjct: 1074 tcttctagatacttttccgcggctgtaaactgtcttttcttgtcttcgattgctagtgca 1015

                                                    
Query: 380  gcgagagctttatctggaggcaaatcctggtagctacgta 419
            || | |||||| || ||||| |||||||||||||| ||||
Sbjct: 1014 gctaaagctttgtccggaggtaaatcctggtagcttcgta 975
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>gb|AF458894.1| Plasmodium falciparum TM4C8 erythrocyte membrane protein 1 (var)
           gene, partial cds
          Length = 1281

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 aactttgcatttagtcaaac 269
           ||||||||||||||||||||
Sbjct: 453 aactttgcatttagtcaaac 434
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>gb|AF458893.1| Plasmodium falciparum M58 erythrocyte membrane protein 1 (var)
           gene, partial cds
          Length = 1385

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 aactttgcatttagtcaaac 269
           ||||||||||||||||||||
Sbjct: 444 aactttgcatttagtcaaac 425
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>gb|AF458892.1| Plasmodium falciparum M57 erythrocyte membrane protein 1 (var)
           gene, partial cds
          Length = 1396

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 aactttgcatttagtcaaac 269
           ||||||||||||||||||||
Sbjct: 453 aactttgcatttagtcaaac 434
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>gb|AF458891.1| Plasmodium falciparum K117 erythrocyte membrane protein 1 (var)
           gene, partial cds
          Length = 1482

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 aactttgcatttagtcaaac 269
           ||||||||||||||||||||
Sbjct: 459 aactttgcatttagtcaaac 440
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>gb|AF458890.1| Plasmodium falciparum M48 erythrocyte membrane protein 1 (var)
           gene, partial cds
          Length = 1476

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 aactttgcatttagtcaaac 269
           ||||||||||||||||||||
Sbjct: 453 aactttgcatttagtcaaac 434
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>gb|AF458889.1| Plasmodium falciparum S120 erythrocyte membrane protein 1 (var)
           gene, partial cds
          Length = 1482

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 aactttgcatttagtcaaac 269
           ||||||||||||||||||||
Sbjct: 450 aactttgcatttagtcaaac 431
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>gb|AF458888.1| Plasmodium falciparum T9/96 erythrocyte membrane protein 1 (var)
           gene, partial cds
          Length = 1489

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 aactttgcatttagtcaaac 269
           ||||||||||||||||||||
Sbjct: 456 aactttgcatttagtcaaac 437
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>gb|AF458886.1| Plasmodium falciparum 7G8 erythrocyte membrane protein 1 (var)
           gene, partial cds
          Length = 1530

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 aactttgcatttagtcaaac 269
           ||||||||||||||||||||
Sbjct: 456 aactttgcatttagtcaaac 437
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>gb|AC091198.6| Homo sapiens chromosome 18, clone RP11-258B16, complete sequence
          Length = 173237

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 283   tcatagaccaggtgttgtta 302
             ||||||||||||||||||||
Sbjct: 59295 tcatagaccaggtgttgtta 59314
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>gb|AC092352.2| Homo sapiens chromosome 16 clone RP11-2M17, complete sequence
          Length = 176117

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   ggtacttctctgcagctgta 346
             ||||||||||||||||||||
Sbjct: 35133 ggtacttctctgcagctgta 35152
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>gb|AC128690.5| Homo sapiens 3 BAC RP11-399P20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164809

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 285    atagaccaggtgttgttaaa 304
              ||||||||||||||||||||
Sbjct: 140917 atagaccaggtgttgttaaa 140898
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>gb|AC159504.5| Mus musculus 10 BAC RP23-302J6 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 201259

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   tttcaatgattaaatttgtt 125
             ||||||||||||||||||||
Sbjct: 36425 tttcaatgattaaatttgtt 36406
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>dbj|AK047558.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:B930088D13
            product:unclassifiable, full insert sequence
          Length = 4232

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 260  ttagtcaaacccacatggcc 279
            ||||||||||||||||||||
Sbjct: 1358 ttagtcaaacccacatggcc 1377
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>gb|AC007336.6| Homo sapiens chromosome 16 clone RP11-212I21, complete sequence
          Length = 193963

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 327    ggtacttctctgcagctgta 346
              ||||||||||||||||||||
Sbjct: 116731 ggtacttctctgcagctgta 116712
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>gb|AC009492.4| Homo sapiens BAC clone RP11-423F9 from 2, complete sequence
          Length = 212549

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    tcacaacttccaagaaaatg 195
              ||||||||||||||||||||
Sbjct: 116466 tcacaacttccaagaaaatg 116485
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>gb|AY084814.1| Arabidopsis thaliana clone 11854 mRNA, complete sequence
          Length = 1217

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 80/100 (80%)
 Strand = Plus / Minus

                                                                        
Query: 320  tcttcaaggtacttctctgcagctgtatactgcctctttttgtcctctatagctaacgca 379
            ||||| || ||||| || || |||||| |||| || || ||||| || || ||||  |||
Sbjct: 1084 tcttctagatacttttccgcggctgtaaactgtcttttcttgtcttcgattgctagtgca 1025

                                                    
Query: 380  gcgagagctttatctggaggcaaatcctggtagctacgta 419
            || | |||||| || ||||| |||||||||||||| ||||
Sbjct: 1024 gctaaagctttgtccggaggtaaatcctggtagcttcgta 985
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>emb|CR545464.8| Zebrafish DNA sequence from clone CH211-270H14 in linkage group 20,
             complete sequence
          Length = 64249

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   gtttcaatgattaaatttgt 124
             ||||||||||||||||||||
Sbjct: 14661 gtttcaatgattaaatttgt 14680
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>emb|BX255922.4| Zebrafish DNA sequence from clone CH211-125A15 in linkage group 4,
             complete sequence
          Length = 155429

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 480   tcaacacacaatgattaatt 499
             ||||||||||||||||||||
Sbjct: 95829 tcaacacacaatgattaatt 95810
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>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
              complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    atagaccaggtgttgttaaa 304
              ||||||||||||||||||||
Sbjct: 160340 atagaccaggtgttgttaaa 160359
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>emb|AL607088.26| Mouse DNA sequence from clone RP23-13A13 on chromosome 4, complete
             sequence
          Length = 103925

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   ttagtcaaacccacatggcc 279
             ||||||||||||||||||||
Sbjct: 50983 ttagtcaaacccacatggcc 50964
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>emb|AL772261.5| Mouse DNA sequence from clone RP23-276J11 on chromosome 4, complete
              sequence
          Length = 191041

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 385    agctttatctggaggcaaat 404
              ||||||||||||||||||||
Sbjct: 146354 agctttatctggaggcaaat 146335
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>emb|AJ420411.1|PFA420411 Plasmodium falciparum partial TM180var2 variant gene for PfEMP1
          Length = 10565

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 250  aactttgcatttagtcaaac 269
            ||||||||||||||||||||
Sbjct: 1826 aactttgcatttagtcaaac 1807


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,206,098
Number of Sequences: 3902068
Number of extensions: 5206098
Number of successful extensions: 92588
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92463
Number of HSP's gapped (non-prelim): 125
length of query: 509
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 487
effective length of database: 17,147,199,772
effective search space: 8350686288964
effective search space used: 8350686288964
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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