ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart26c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF099914.1| Caenorhabditis elegans cosmid C40A11, complete se... 46 0.091
2gb|AC055845.15| Homo sapiens chromosome 11, clone RP11-682B13, c... 44 0.36
3gb|BC086300.1| Xenopus laevis cDNA clone IMAGE:3399754 40 5.6
4emb|AL606686.3|OSJN00084 Oryza sativa genomic DNA, chromosome 4,... 40 5.6
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
6emb|AL732347.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 5.6
7emb|AL355835.3|CNS05TCP Human chromosome 14 DNA sequence BAC R-1... 40 5.6
8emb|AL161751.3|CNS01RHG Human chromosome 14 DNA sequence BAC R-9... 40 5.6

>gb|AF099914.1| Caenorhabditis elegans cosmid C40A11, complete sequence
          Length = 29575

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 220  acatgcaaatgtaacttgaaatg 242
            |||||||||||||||||||||||
Sbjct: 1140 acatgcaaatgtaacttgaaatg 1118



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>gb|AC055845.15| Homo sapiens chromosome 11, clone RP11-682B13, complete sequence
          Length = 155304

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 95     ttcccttggcgaggtttacctagagg 120
              ||||||||| ||||||||||||||||
Sbjct: 143654 ttcccttggggaggtttacctagagg 143629



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>gb|BC086300.1| Xenopus laevis cDNA clone IMAGE:3399754
          Length = 1446

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 223 tgcaaatgtaacttgaaatggatc 246
           ||||||||| ||||||||||||||
Sbjct: 775 tgcaaatgttacttgaaatggatc 752



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>emb|AL606686.3|OSJN00084 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070M12,
             complete sequence
          Length = 144670

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 268   aattaactagtgtggtcaaagatg 291
             ||||||| ||||||||||||||||
Sbjct: 29076 aattaacaagtgtggtcaaagatg 29053



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 268      aattaactagtgtggtcaaagatg 291
                ||||||| ||||||||||||||||
Sbjct: 35092573 aattaacaagtgtggtcaaagatg 35092550



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>emb|AL732347.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0723C07, complete
             sequence
          Length = 112897

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 268   aattaactagtgtggtcaaagatg 291
             ||||||| ||||||||||||||||
Sbjct: 47662 aattaacaagtgtggtcaaagatg 47639



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>emb|AL355835.3|CNS05TCP Human chromosome 14 DNA sequence BAC R-196N22 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 172374

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   aactagtgtggtcaaagatg 291
             ||||||||||||||||||||
Sbjct: 57911 aactagtgtggtcaaagatg 57930



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>emb|AL161751.3|CNS01RHG Human chromosome 14 DNA sequence BAC R-96D24 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 184692

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   aactagtgtggtcaaagatg 291
             ||||||||||||||||||||
Sbjct: 94075 aactagtgtggtcaaagatg 94094


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,660,837
Number of Sequences: 3902068
Number of extensions: 2660837
Number of successful extensions: 49424
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49411
Number of HSP's gapped (non-prelim): 13
length of query: 418
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 396
effective length of database: 17,147,199,772
effective search space: 6790291109712
effective search space used: 6790291109712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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