ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart26b10 |
|---|---|
| Clone Library Name | barley_pub |
>NQR1_ORYSA (Q941Z0) Putative NADPH:quinone oxidoreductase 1 (EC 1.6.5.2)| Length = 197 Score = 151 bits (381), Expect = 1e-36 Identities = 71/97 (73%), Positives = 83/97 (85%) Frame = -3 Query: 502 NALDWASRGTHKCWADKAAAIVCAGGDFGGGRASLHLRQIGIYLDLHFINKPELHIRAYE 323 NALDWASRG + CWADK AAIV AGG FGGGR+ HLRQ+G++LDLHFINKPEL ++A+E Sbjct: 101 NALDWASRGQN-CWADKPAAIVSAGGGFGGGRSQYHLRQVGVFLDLHFINKPELAVKAFE 159 Query: 322 DPPKFDEKGNLVDAKARERLKKVLLSLQAFALRLQHK 212 PPKFD GNL+DA+ RER+K+VLLSLQAF LRLQ K Sbjct: 160 QPPKFDSDGNLIDAQIRERIKQVLLSLQAFTLRLQKK 196
>NQR_ARATH (Q9LK88) NADPH:quinone oxidoreductase (EC 1.6.5.2)| Length = 196 Score = 132 bits (333), Expect = 4e-31 Identities = 65/97 (67%), Positives = 76/97 (78%) Frame = -3 Query: 502 NALDWASRGTHKCWADKAAAIVCAGGDFGGGRASLHLRQIGIYLDLHFINKPELHIRAYE 323 NALDWASR + WADK AAI+ GG FGGGR+ HLRQIG++LDLHFINKPE + A++ Sbjct: 101 NALDWASRPPN-VWADKPAAIISTGGGFGGGRSQYHLRQIGVFLDLHFINKPEFTLNAFQ 159 Query: 322 DPPKFDEKGNLVDAKARERLKKVLLSLQAFALRLQHK 212 P KFD +GNLVD +ERLK+VLLSLQAF LRLQ K Sbjct: 160 PPQKFDAEGNLVDEVTKERLKQVLLSLQAFTLRLQGK 196
>NQR2_ORYSA (Q941Y8) Putative NADPH:quinone oxidoreductase 2 (EC 1.6.5.2)| Length = 203 Score = 127 bits (319), Expect = 2e-29 Identities = 60/97 (61%), Positives = 76/97 (78%) Frame = -3 Query: 502 NALDWASRGTHKCWADKAAAIVCAGGDFGGGRASLHLRQIGIYLDLHFINKPELHIRAYE 323 NALDW SR + CWAD+AAAIV A G GG R+ H+RQ+G++LD+HFINKPE+ I+A++ Sbjct: 100 NALDWGSRPPN-CWADRAAAIVSASGGSGGSRSMYHIRQVGVFLDIHFINKPEVFIKAHQ 158 Query: 322 DPPKFDEKGNLVDAKARERLKKVLLSLQAFALRLQHK 212 P KFD GNL+D + +E LK +LLSLQAFALRLQ K Sbjct: 159 PPKKFDSDGNLIDPEIKEELKDMLLSLQAFALRLQGK 195
>NQR_SOLTU (Q8H9D2) NAD(P)H:quinone oxidoreductase (EC 1.6.5.2) (NAD(P)H:QR)| Length = 194 Score = 126 bits (317), Expect = 3e-29 Identities = 60/97 (61%), Positives = 76/97 (78%) Frame = -3 Query: 502 NALDWASRGTHKCWADKAAAIVCAGGDFGGGRASLHLRQIGIYLDLHFINKPELHIRAYE 323 NA+DWASR + WADKAAA+V AGG FGGGR+ HLRQIG++LDLHFINKPE + A++ Sbjct: 97 NAIDWASRPPN-VWADKAAAMVSAGGGFGGGRSQYHLRQIGVFLDLHFINKPEFFLNAFQ 155 Query: 322 DPPKFDEKGNLVDAKARERLKKVLLSLQAFALRLQHK 212 PPKFD G L D + ++RL+ VLL+LQA AL+L+ K Sbjct: 156 QPPKFDSDGVLTDEETKQRLRAVLLALQALALKLKGK 192
>YIEF_SHIFL (P0AGE8) Hypothetical protein yieF| Length = 188 Score = 45.1 bits (105), Expect = 1e-04 Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 4/99 (4%) Frame = -3 Query: 502 NALDWASRGTHKCWADKAAAIVCAG-GDFGGGRASLHLRQIGIYLDLHFINKPELH---I 335 NA+DW SR + A K I + G GG R HLRQI ++LD +NKPE I Sbjct: 93 NAIDWLSRLPDQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDAMVMNKPEFMGGVI 152 Query: 334 RAYEDPPKFDEKGNLVDAKARERLKKVLLSLQAFALRLQ 218 + DP + G ++D + L L + F R++ Sbjct: 153 QNKVDP----QTGEVIDQGTLDHLTGQLTAFGEFIQRVK 187
>YIEF_ECOLI (P0AGE6) Hypothetical protein yieF| Length = 188 Score = 45.1 bits (105), Expect = 1e-04 Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 4/99 (4%) Frame = -3 Query: 502 NALDWASRGTHKCWADKAAAIVCAG-GDFGGGRASLHLRQIGIYLDLHFINKPELH---I 335 NA+DW SR + A K I + G GG R HLRQI ++LD +NKPE I Sbjct: 93 NAIDWLSRLPDQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDAMVMNKPEFMGGVI 152 Query: 334 RAYEDPPKFDEKGNLVDAKARERLKKVLLSLQAFALRLQ 218 + DP + G ++D + L L + F R++ Sbjct: 153 QNKVDP----QTGEVIDQGTLDHLTGQLTAFGEFIQRVK 187
>YIEF_ECO57 (P0AGE7) Hypothetical protein yieF| Length = 188 Score = 45.1 bits (105), Expect = 1e-04 Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 4/99 (4%) Frame = -3 Query: 502 NALDWASRGTHKCWADKAAAIVCAG-GDFGGGRASLHLRQIGIYLDLHFINKPELH---I 335 NA+DW SR + A K I + G GG R HLRQI ++LD +NKPE I Sbjct: 93 NAIDWLSRLPDQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDAMVMNKPEFMGGVI 152 Query: 334 RAYEDPPKFDEKGNLVDAKARERLKKVLLSLQAFALRLQ 218 + DP + G ++D + L L + F R++ Sbjct: 153 QNKVDP----QTGEVIDQGTLDHLTGQLTAFGEFIQRVK 187
>FABH_CLOAB (Q97DA2) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase III) (Beta-ketoacyl-ACP synthase III) (KAS III) Length = 325 Score = 30.8 bits (68), Expect = 2.2 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -3 Query: 496 LDWASRGTHKCWADKAAAIVCAGGDFGG 413 LDW RGT + D A A++ GGD G Sbjct: 146 LDWQDRGTCVLFGDGAGAVIIRGGDENG 173
>RRBP1_CANFA (Q28298) Ribosome-binding protein 1 (180 kDa ribosome receptor)| (RRp) Length = 1534 Score = 30.0 bits (66), Expect = 3.7 Identities = 18/54 (33%), Positives = 24/54 (44%) Frame = -2 Query: 347 GAPHQGV*GPAEVRREGEPRRRQSQGAAQEGAPLAAGLRAQAPTQGELSEDRTN 186 GAP+QG A + + +QG EGAP AP QG+ +E N Sbjct: 574 GAPNQGKKAEAAPNQGKKAEGAPNQGKKAEGAPNQGKKAEAAPNQGKKAEGAPN 627 Score = 29.6 bits (65), Expect = 4.8 Identities = 18/54 (33%), Positives = 24/54 (44%) Frame = -2 Query: 347 GAPHQGV*GPAEVRREGEPRRRQSQGAAQEGAPLAAGLRAQAPTQGELSEDRTN 186 GAP+QG A + + +QG EGAP AP QG+ +E N Sbjct: 604 GAPNQGKKAEAAPNQGKKAEGAPNQGKKAEGAPNQGKKAEGAPNQGKKAEGAQN 657 Score = 28.9 bits (63), Expect = 8.2 Identities = 20/54 (37%), Positives = 25/54 (46%) Frame = -2 Query: 347 GAPHQGV*GPAEVRREGEPRRRQSQGAAQEGAPLAAGLRAQAPTQGELSEDRTN 186 GAP+QG + EG P +QG EGAP AP QG+ +E N Sbjct: 554 GAPNQGK------KAEGAP----NQGKKAEGAPNQGKKAEAAPNQGKKAEGAPN 597
>ENV_FIVU1 (Q03804) Env polyprotein (GP150 polyprotein) [Contains: Major| glycoprotein GP100; Glycoprotein GP36] Length = 856 Score = 30.0 bits (66), Expect = 3.7 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Frame = +3 Query: 216 CWSLSAKACSE---RSTFLSRSLALASTRFPFSSNFGGSSYALMWSSGLLMKCRSRYIPI 386 CW+ AC + L S +++T P N+ +A ++ R R I Sbjct: 197 CWAPEEPACQDFLGAMIHLKASTNISNTEGPTLGNWAREIWATLFKKATRQCRRGR---I 253 Query: 387 WRRWSDALPPP 419 W+RW++ + P Sbjct: 254 WKRWNETITGP 264
>YIH7_YEAST (P40508) Hypothetical 36.9 kDa protein in THS1-SEC28 intergenic| region Length = 320 Score = 29.6 bits (65), Expect = 4.8 Identities = 17/47 (36%), Positives = 27/47 (57%) Frame = -3 Query: 382 GIYLDLHFINKPELHIRAYEDPPKFDEKGNLVDAKARERLKKVLLSL 242 G+ +L F+ +P +AYE+ +F EK L+DA+ R L K S+ Sbjct: 16 GMENELPFMKRPWFK-KAYENAIEFHEKDELLDARDRLELSKAYRSI 61
>NRTN_HUMAN (Q99748) Neurturin precursor| Length = 197 Score = 28.9 bits (63), Expect = 8.2 Identities = 16/25 (64%), Positives = 17/25 (68%), Gaps = 1/25 (4%) Frame = -1 Query: 501 TRWTGR-PGARTNAGPTRRRRSSAR 430 T W GR PG R AGP RRRR+ AR Sbjct: 74 TPWAGRPPGPRRRAGP-RRRRARAR 97
>KCNQ1_MOUSE (P97414) Potassium voltage-gated channel subfamily KQT member 1| (Voltage-gated potassium channel subunit Kv7.1) (IKs producing slow voltage-gated potassium channel alpha subunit KvLQT1) (KQT-like 1) Length = 668 Score = 28.9 bits (63), Expect = 8.2 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = +3 Query: 312 FGGSSYAL-MWSSGLLMKCRSRYIPIWRRWSDALPP 416 F G+ Y + +WS+G CRS+Y+ IW R A P Sbjct: 165 FFGTEYVVRLWSAG----CRSKYVGIWGRLRFARKP 196
>KCNQ1_CAVPO (O70344) Potassium voltage-gated channel subfamily KQT member 1| (Voltage-gated potassium channel subunit Kv7.1) (IKs producing slow voltage-gated potassium channel alpha subunit KvLQT1) (KQT-like 1) (Fragment) Length = 169 Score = 28.9 bits (63), Expect = 8.2 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = +3 Query: 312 FGGSSYAL-MWSSGLLMKCRSRYIPIWRRWSDALPP 416 F G+ Y + +WS+G CRS+Y+ IW R A P Sbjct: 13 FFGTEYVVRLWSAG----CRSKYVGIWGRLRFARKP 44
>KCNQ1_XENLA (P70057) Potassium voltage-gated channel subfamily KQT member 1| (Voltage-gated potassium channel subunit Kv7.1) (IKs producing slow voltage-gated potassium channel alpha subunit xKvLQT1) (KQT-like 1) (Fragment) Length = 377 Score = 28.9 bits (63), Expect = 8.2 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +3 Query: 312 FGGSSYALMWSSGLLMKCRSRYIPIWRRWSDALPP 416 FG +WS+G CRS+Y+ +W R A P Sbjct: 133 FGAEYVVRLWSAG----CRSKYVGVWGRLRFARKP 163
>KCNQ1_RAT (Q9Z0N7) Potassium voltage-gated channel subfamily KQT member 1| (Voltage-gated potassium channel subunit Kv7.1) (IKs producing slow voltage-gated potassium channel alpha subunit KvLQT1) (KQT-like 1) Length = 669 Score = 28.9 bits (63), Expect = 8.2 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = +3 Query: 312 FGGSSYAL-MWSSGLLMKCRSRYIPIWRRWSDALPP 416 F G+ Y + +WS+G CRS+Y+ IW R A P Sbjct: 166 FFGTEYVVRLWSAG----CRSKYVGIWGRLRFARKP 197
>LEXA_SILPO (Q5LRH4) LexA repressor (EC 3.4.21.88)| Length = 231 Score = 28.9 bits (63), Expect = 8.2 Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Frame = -3 Query: 367 LHFINKPELHIRAYEDPPKFDEKGNLVDAKARERLKKVLLSLQ--AFALRLQHKGN*VKI 194 L FI+K ++A PP FDE +D +++ + +++ +L+ F RL H+ ++I Sbjct: 10 LEFIHK---RLQADGVPPSFDEMKLALDLRSKSGIHRLITALEERGFIRRLAHRARAIEI 66 Query: 193 EQI 185 ++ Sbjct: 67 VKL 69 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,410,411 Number of Sequences: 219361 Number of extensions: 1416673 Number of successful extensions: 5121 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4815 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5103 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
