>gb|AY106272.1| Zea mays PCO085431 mRNA sequence
          Length = 1019

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 222 agcctgagcgcgaaggcctgcagcgagaggagcaccttcttgagccgctc 271
           |||||||||| ||||||||| || || |||||||| ||||||||||||||
Sbjct: 743 agcctgagcgtgaaggcctgaagggataggagcactttcttgagccgctc 694

>ref|XM_395212.2| PREDICTED: Apis mellifera similar to ENSANGP00000012507 (LOC411744),
            mRNA
          Length = 6855

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 289  cgaggttccccttctcgtcgaacttcggcgg 319
            ||||||||||||||||| ||||||| |||||
Sbjct: 1075 cgaggttccccttctcgacgaacttgggcgg 1045

>ref|XM_476644.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 965

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 484 acgcccagtccagcgcgttct 504
           |||||||||||||||||||||
Sbjct: 491 acgcccagtccagcgcgttct 471

>ref|XM_864979.1| PREDICTED: Bos taurus similar to Transcription elongation factor A
           protein 2 (Transcription elongation factor S-II protein
           2) (Testis-specific S-II) (Transcription elongation
           factor TFIIS.l), transcript variant 2 (LOC507729), mRNA
          Length = 1174

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 266 ccgctccctggctttggcgtc 286
           |||||||||||||||||||||
Sbjct: 359 ccgctccctggctttggcgtc 339

>ref|XM_874632.1| PREDICTED: Bos taurus similar to Transcription elongation factor A
           protein 2 (Transcription elongation factor S-II protein
           2) (Testis-specific S-II) (Transcription elongation
           factor TFIIS.l), transcript variant 7 (LOC507729), mRNA
          Length = 1349

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 266 ccgctccctggctttggcgtc 286
           |||||||||||||||||||||
Sbjct: 359 ccgctccctggctttggcgtc 339

>ref|XM_874469.1| PREDICTED: Bos taurus similar to Transcription elongation factor A
           protein 2 (Transcription elongation factor S-II protein
           2) (Testis-specific S-II) (Transcription elongation
           factor TFIIS.l), transcript variant 5 (LOC507729), mRNA
          Length = 1176

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 266 ccgctccctggctttggcgtc 286
           |||||||||||||||||||||
Sbjct: 346 ccgctccctggctttggcgtc 326

>ref|XM_874384.1| PREDICTED: Bos taurus similar to Transcription elongation factor A
           protein 2 (Transcription elongation factor S-II protein
           2) (Testis-specific S-II) (Transcription elongation
           factor TFIIS.l), transcript variant 4 (LOC507729), mRNA
          Length = 1186

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 266 ccgctccctggctttggcgtc 286
           |||||||||||||||||||||
Sbjct: 359 ccgctccctggctttggcgtc 339

>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 288     acgaggttccccttctcgtcgaact 312
               |||||||||| ||||||||||||||
Sbjct: 2136337 acgaggttccgcttctcgtcgaact 2136361

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 484     acgcccagtccagcgcgttct 504
               |||||||||||||||||||||
Sbjct: 2628573 acgcccagtccagcgcgttct 2628593

>dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1027_G06
          Length = 121885

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 484   acgcccagtccagcgcgttct 504
             |||||||||||||||||||||
Sbjct: 54291 acgcccagtccagcgcgttct 54311

>dbj|AK109055.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-E09, full
           insert sequence
          Length = 965

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 484 acgcccagtccagcgcgttct 504
           |||||||||||||||||||||
Sbjct: 491 acgcccagtccagcgcgttct 471

>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 252     agcaccttcttgagccgctcc 272
               |||||||||||||||||||||
Sbjct: 3334782 agcaccttcttgagccgctcc 3334802

>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 430     ccgcgcagacgatcgccgcc 449
               ||||||||||||||||||||
Sbjct: 2313911 ccgcgcagacgatcgccgcc 2313892

>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 121    gccacagcccgaagcgttcatcac 144
              |||||||||||| |||||||||||
Sbjct: 718580 gccacagcccgacgcgttcatcac 718603

>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 437     gacgatcgccgccgccttgtcggcccag 464
               |||||||||||| ||||| |||||||||
Sbjct: 2572863 gacgatcgccgcggccttctcggcccag 2572890

>gb|AY626777.1| Burkholderia pseudomallei clone ttss021 putative type III secretory
           pathway protein gene, complete cds
          Length = 249

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 431 cgcgcagacgatcgccgccg 450
           ||||||||||||||||||||
Sbjct: 88  cgcgcagacgatcgccgccg 69

>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 431    cgcgcagacgatcgccgccg 450
              ||||||||||||||||||||
Sbjct: 602248 cgcgcagacgatcgccgccg 602229

>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 437     gacgatcgccgccgccttgtcggcccag 464
               |||||||||||| ||||| |||||||||
Sbjct: 3785130 gacgatcgccgcggccttctcggcccag 3785157

>gb|AC140232.2| Mus musculus BAC clone RP24-498F17 from chromosome 5, complete sequence
          Length = 183612

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 263   gagccgctccctggctttgg 282
             ||||||||||||||||||||
Sbjct: 69322 gagccgctccctggctttgg 69341

>gb|AC110227.6| Mus musculus chromosome 9, clone RP24-331H14, complete sequence
          Length = 196758

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     acaaaccacatgtgtaacac 114
              ||||||||||||||||||||
Sbjct: 126858 acaaaccacatgtgtaacac 126839

>gb|AY150027.1| Bacteriophage pMLP1 att/int region
          Length = 2025

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 439 cgatcgccgccgccttgtcg 458
           ||||||||||||||||||||
Sbjct: 581 cgatcgccgccgccttgtcg 562

>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 441     atcgccgccgccttgtcggc 460
               ||||||||||||||||||||
Sbjct: 1753244 atcgccgccgccttgtcggc 1753263

>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 408    ctgccgccgccgaagtcacc 427
              ||||||||||||||||||||
Sbjct: 445503 ctgccgccgccgaagtcacc 445522

>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 431     cgcgcagacgatcgccgccg 450
               ||||||||||||||||||||
Sbjct: 1922024 cgcgcagacgatcgccgccg 1922005

>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 437     gacgatcgccgccgccttgtcggcccag 464
               |||||||||||| ||||| |||||||||
Sbjct: 3525433 gacgatcgccgcggccttctcggcccag 3525460

>emb|BX569690.1| Synechococcus sp. WH8102 complete genome; segment 2/7
          Length = 349652

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 281   ggcgtcgacgaggttcccct 300
             ||||||||||||||||||||
Sbjct: 10903 ggcgtcgacgaggttcccct 10922

>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 439   cgatcgccgccgccttgtcg 458
             ||||||||||||||||||||
Sbjct: 89125 cgatcgccgccgccttgtcg 89106

>emb|AJ431695.1|PZE431695 Paracoccus zeaxanthinifaciens phaA gene, phaB gene, ORF1 and ddsA
            gene
          Length = 4316

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 478  ccctggacgcccagtccagcgcgt 501
            |||||| |||||||||||||||||
Sbjct: 4227 ccctggccgcccagtccagcgcgt 4204

>gb|AF074878.2| Burkholderia pseudomallei putative type III secretion system-associated
             gene cluster, complete sequence
          Length = 29814

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 431   cgcgcagacgatcgccgccg 450
             ||||||||||||||||||||
Sbjct: 27678 cgcgcagacgatcgccgccg 27659

>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 434     gcagacgatcgccgccgcct 453
               ||||||||||||||||||||
Sbjct: 1207711 gcagacgatcgccgccgcct 1207692

>gb|AC005701.1|AC005701 Homo sapiens chromosome 17, clone hRPK.628_E_12, complete sequence
          Length = 197455

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 64     acgagtacaaggtaaaaaag 83
              ||||||||||||||||||||
Sbjct: 175493 acgagtacaaggtaaaaaag 175474

>emb|CT572987.3| Mouse DNA sequence from clone RP23-473B8 on chromosome X, complete
             sequence
          Length = 41948

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 350   tttgttaatgaaatgcaggt 369
             ||||||||||||||||||||
Sbjct: 18655 tttgttaatgaaatgcaggt 18636

>emb|AL833792.10| Mouse DNA sequence from clone RP23-97B23 on chromosome X, complete
             sequence
          Length = 225818

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    agtacaaggtaaaaaagagc 86
             ||||||||||||||||||||
Sbjct: 61710 agtacaaggtaaaaaagagc 61691


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,497,113
Number of Sequences: 3902068
Number of extensions: 3497113
Number of successful extensions: 61710
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60863
Number of HSP's gapped (non-prelim): 847
length of query: 504
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 482
effective length of database: 17,147,199,772
effective search space: 8264950290104
effective search space used: 8264950290104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)