Clone Name | rbart26b08 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009394.1| Triticum aestivum clone wlm96.pk037.m21:fis, full insert mRNA sequence Length = 953 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 160 aataatacaattgattaagggaagcggctggtaaggaa 197 ||||||||||||||||||| ||||||||||||||||| Sbjct: 927 aataatacaattgattaagataagcggctggtaaggaa 890
>gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099O15, complete sequence Length = 137357 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Plus Query: 67 ccctctcctctcatcaaatttc 88 |||||||||||||||||||||| Sbjct: 118827 ccctctcctctcatcaaatttc 118848
>gb|AC093952.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1004_E02, complete sequence Length = 127642 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Plus Query: 67 ccctctcctctcatcaaatttc 88 |||||||||||||||||||||| Sbjct: 9747 ccctctcctctcatcaaatttc 9768
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Plus Query: 67 ccctctcctctcatcaaatttc 88 |||||||||||||||||||||| Sbjct: 23728874 ccctctcctctcatcaaatttc 23728895
>dbj|AK062452.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-C05, full insert sequence Length = 551 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Minus Query: 67 ccctctcctctcatcaaatttc 88 |||||||||||||||||||||| Sbjct: 216 ccctctcctctcatcaaatttc 195
>emb|AL138917.11| Human DNA sequence from clone RP3-354M18 on chromosome 6 Contains the 5' end of the APG5L gene for APG5 autophagy 5-like (S. cerevisiae) and a CpG island, complete sequence Length = 34768 Score = 42.1 bits (21), Expect = 0.79 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 aaaaaagtattattgaaaact 115 ||||||||||||||||||||| Sbjct: 11155 aaaaaagtattattgaaaact 11175
>gb|AC147479.17| Mus musculus chromosome 17, clone RP24-178C19, complete sequence Length = 178820 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 ccactcctccctctcctctc 78 |||||||||||||||||||| Sbjct: 73124 ccactcctccctctcctctc 73105
>gb|AC151292.2| Mus musculus BAC clone RP23-138P14 from chromosome 17, complete sequence Length = 216585 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 ccactcctccctctcctctc 78 |||||||||||||||||||| Sbjct: 160872 ccactcctccctctcctctc 160891
>gb|AC116472.14| Mus musculus chromosome 7, clone RP23-384B23, complete sequence Length = 216191 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 ggaaaaataatacaattgattaag 178 ||||||||||| |||||||||||| Sbjct: 154435 ggaaaaataatgcaattgattaag 154412
>emb|AL606500.8| Human DNA sequence from clone RP11-274N19 on chromosome 1 Contains the 3' end of the KCNN3 gene for potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3, a novel gene and the 5' end of the ADAR gene for adenosine deaminase, RNA-specific, complete sequence Length = 173014 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 actcctccctctcctctcatcaaa 84 |||||||||||||| ||||||||| Sbjct: 107848 actcctccctctcccctcatcaaa 107871
>emb|AL603964.2| Human DNA sequence from clone RP13-13L9 on chromosome 6, complete sequence Length = 26986 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 ccactcctccctctcctctcatca 82 |||||| ||||||||||||||||| Sbjct: 3590 ccactcttccctctcctctcatca 3613
>emb|AL513342.7| Human DNA sequence from clone RP11-96F14 on chromosome 1 Contains part of the FMN2 gene for formin 2, complete sequence Length = 127208 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 actcctccctctcctctcat 80 |||||||||||||||||||| Sbjct: 48178 actcctccctctcctctcat 48159
>emb|AL355674.10| Human DNA sequence from clone RP11-171A24 on chromosome 9 Contains the 5' end of the RORB gene for RAR-related orphan receptor B protein (RZRB, ROR-BETA), two novel genes and two CpG islands, complete sequence Length = 174874 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 tttaagagtacagtacataa 52 |||||||||||||||||||| Sbjct: 106430 tttaagagtacagtacataa 106411
>gb|AC116105.12| Mus musculus chromosome 1, clone RP23-23A4, complete sequence Length = 214780 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 cactcctccctctcctctca 79 |||||||||||||||||||| Sbjct: 84202 cactcctccctctcctctca 84221
>gb|AC026724.3| Homo sapiens chromosome 5 clone CTD-2229I16, complete sequence Length = 156254 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 54 taaaaccactcctccctctcctct 77 ||||||||||||||||| |||||| Sbjct: 71841 taaaaccactcctccctgtcctct 71818
>gb|AC092118.3| Homo sapiens chromosome 16 clone CTD-2600O9, complete sequence Length = 148794 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 gtttaagagtacagtacata 51 |||||||||||||||||||| Sbjct: 114656 gtttaagagtacagtacata 114637 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,433,024 Number of Sequences: 3902068 Number of extensions: 2433024 Number of successful extensions: 54910 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54861 Number of HSP's gapped (non-prelim): 49 length of query: 242 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 220 effective length of database: 17,147,199,772 effective search space: 3772383949840 effective search space used: 3772383949840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)