ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart26b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009394.1| Triticum aestivum clone wlm96.pk037.m21:fis, full... 60 3e-06
2gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.20
3gb|AC093952.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.20
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.20
5dbj|AK062452.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.20
6emb|AL138917.11| Human DNA sequence from clone RP3-354M18 on chr... 42 0.79
7gb|AC147479.17| Mus musculus chromosome 17, clone RP24-178C19, c... 40 3.1
8gb|AC151292.2| Mus musculus BAC clone RP23-138P14 from chromosom... 40 3.1
9gb|AC116472.14| Mus musculus chromosome 7, clone RP23-384B23, co... 40 3.1
10emb|AL606500.8| Human DNA sequence from clone RP11-274N19 on chr... 40 3.1
11emb|AL603964.2| Human DNA sequence from clone RP13-13L9 on chrom... 40 3.1
12emb|AL513342.7| Human DNA sequence from clone RP11-96F14 on chro... 40 3.1
13emb|AL355674.10| Human DNA sequence from clone RP11-171A24 on ch... 40 3.1
14gb|AC116105.12| Mus musculus chromosome 1, clone RP23-23A4, comp... 40 3.1
15gb|AC026724.3| Homo sapiens chromosome 5 clone CTD-2229I16, comp... 40 3.1
16gb|AC092118.3| Homo sapiens chromosome 16 clone CTD-2600O9, comp... 40 3.1

>gb|BT009394.1| Triticum aestivum clone wlm96.pk037.m21:fis, full insert mRNA
           sequence
          Length = 953

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                 
Query: 160 aataatacaattgattaagggaagcggctggtaaggaa 197
           |||||||||||||||||||  |||||||||||||||||
Sbjct: 927 aataatacaattgattaagataagcggctggtaaggaa 890



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>gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099O15,
              complete sequence
          Length = 137357

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 67     ccctctcctctcatcaaatttc 88
              ||||||||||||||||||||||
Sbjct: 118827 ccctctcctctcatcaaatttc 118848



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>gb|AC093952.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1004_E02,
            complete sequence
          Length = 127642

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 67   ccctctcctctcatcaaatttc 88
            ||||||||||||||||||||||
Sbjct: 9747 ccctctcctctcatcaaatttc 9768



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 67       ccctctcctctcatcaaatttc 88
                ||||||||||||||||||||||
Sbjct: 23728874 ccctctcctctcatcaaatttc 23728895



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>dbj|AK062452.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-C05, full
           insert sequence
          Length = 551

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 67  ccctctcctctcatcaaatttc 88
           ||||||||||||||||||||||
Sbjct: 216 ccctctcctctcatcaaatttc 195



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>emb|AL138917.11| Human DNA sequence from clone RP3-354M18 on chromosome 6 Contains the
             5' end of the APG5L gene for APG5 autophagy 5-like (S.
             cerevisiae) and a CpG island, complete sequence
          Length = 34768

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 95    aaaaaagtattattgaaaact 115
             |||||||||||||||||||||
Sbjct: 11155 aaaaaagtattattgaaaact 11175



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>gb|AC147479.17| Mus musculus chromosome 17, clone RP24-178C19, complete sequence
          Length = 178820

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    ccactcctccctctcctctc 78
             ||||||||||||||||||||
Sbjct: 73124 ccactcctccctctcctctc 73105



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>gb|AC151292.2| Mus musculus BAC clone RP23-138P14 from chromosome 17, complete sequence
          Length = 216585

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     ccactcctccctctcctctc 78
              ||||||||||||||||||||
Sbjct: 160872 ccactcctccctctcctctc 160891



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>gb|AC116472.14| Mus musculus chromosome 7, clone RP23-384B23, complete sequence
          Length = 216191

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 155    ggaaaaataatacaattgattaag 178
              ||||||||||| ||||||||||||
Sbjct: 154435 ggaaaaataatgcaattgattaag 154412



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>emb|AL606500.8| Human DNA sequence from clone RP11-274N19 on chromosome 1 Contains the 3'
              end of the KCNN3 gene for potassium intermediate/small
              conductance calcium-activated channel, subfamily N, member
              3, a novel gene and the 5' end of the ADAR gene for
              adenosine deaminase, RNA-specific, complete sequence
          Length = 173014

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 61     actcctccctctcctctcatcaaa 84
              |||||||||||||| |||||||||
Sbjct: 107848 actcctccctctcccctcatcaaa 107871



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>emb|AL603964.2| Human DNA sequence from clone RP13-13L9 on chromosome 6, complete
            sequence
          Length = 26986

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 59   ccactcctccctctcctctcatca 82
            |||||| |||||||||||||||||
Sbjct: 3590 ccactcttccctctcctctcatca 3613



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>emb|AL513342.7| Human DNA sequence from clone RP11-96F14 on chromosome 1 Contains part
             of the FMN2 gene for formin 2, complete sequence
          Length = 127208

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    actcctccctctcctctcat 80
             ||||||||||||||||||||
Sbjct: 48178 actcctccctctcctctcat 48159



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>emb|AL355674.10| Human DNA sequence from clone RP11-171A24 on chromosome 9 Contains the 5'
              end of the RORB gene for RAR-related orphan receptor B
              protein (RZRB, ROR-BETA), two novel genes and two CpG
              islands, complete sequence
          Length = 174874

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     tttaagagtacagtacataa 52
              ||||||||||||||||||||
Sbjct: 106430 tttaagagtacagtacataa 106411



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>gb|AC116105.12| Mus musculus chromosome 1, clone RP23-23A4, complete sequence
          Length = 214780

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    cactcctccctctcctctca 79
             ||||||||||||||||||||
Sbjct: 84202 cactcctccctctcctctca 84221



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>gb|AC026724.3| Homo sapiens chromosome 5 clone CTD-2229I16, complete sequence
          Length = 156254

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 54    taaaaccactcctccctctcctct 77
             ||||||||||||||||| ||||||
Sbjct: 71841 taaaaccactcctccctgtcctct 71818



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>gb|AC092118.3| Homo sapiens chromosome 16 clone CTD-2600O9, complete sequence
          Length = 148794

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     gtttaagagtacagtacata 51
              ||||||||||||||||||||
Sbjct: 114656 gtttaagagtacagtacata 114637


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,433,024
Number of Sequences: 3902068
Number of extensions: 2433024
Number of successful extensions: 54910
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54861
Number of HSP's gapped (non-prelim): 49
length of query: 242
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 220
effective length of database: 17,147,199,772
effective search space: 3772383949840
effective search space used: 3772383949840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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