>POL1_TORVR (P29150) RNA1 polyprotein (P1) [Contains: X1 protein; X2 protein;|
            Putative ATP-dependent helicase (EC 3.6.1.-) (NTP-binding
            protein) (NTB) (Membrane-binding protein); Viral
            genome-linked protein (VPg); Picornain 3C-like protease
            (EC 3.4.22.-)
          Length = 2197

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 58   GSLYLATNPSLHCSLVENEQITHFKPWNPSHIYNITKP 171
            G  +L+     HC+   +EQ + +KPW+P     +  P
Sbjct: 1996 GGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLEVDVP 2033


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,288,740
Number of Sequences: 219361
Number of extensions: 1571226
Number of successful extensions: 3208
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3208
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)