ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart26b03 |
|---|---|
| Clone Library Name | barley_pub |
>PSB6_ARATH (Q8LD27) Proteasome subunit beta type 6 precursor (EC 3.4.25.1)| (Proteasome subunit beta type 1) (20S proteasome beta subunit A-1) (Proteasome component CD) Length = 233 Score = 85.5 bits (210), Expect = 8e-17 Identities = 41/56 (73%), Positives = 46/56 (82%) Frame = -2 Query: 510 IARDGASGGVVRTVTINEEGVKRSFHPGDILPLWHEEMKPQNSLLDILAAGSSDAM 343 IARDGASGGVVRTV IN EGV R+F+PGD L LWHEE++PQNSLLDIL A + M Sbjct: 176 IARDGASGGVVRTVIINSEGVTRNFYPGDKLQLWHEELEPQNSLLDILNAAGPEPM 231
>PSB6_TOBAC (P93395) Proteasome subunit beta type 6 precursor (EC 3.4.25.1)| (Proteasome delta chain) (Tobacco cryptogein-induced protein 7) (tcI 7) Length = 234 Score = 79.3 bits (194), Expect = 5e-15 Identities = 38/57 (66%), Positives = 45/57 (78%) Frame = -2 Query: 510 IARDGASGGVVRTVTINEEGVKRSFHPGDILPLWHEEMKPQNSLLDILAAGSSDAMV 340 IARDGASGGVVRTVTIN++G R F+ GD L LWHEE++P NSLLD++ A S MV Sbjct: 177 IARDGASGGVVRTVTINKDGATRKFYSGDSLQLWHEELEPVNSLLDVVFASSPVPMV 233
>PSB6_MOUSE (Q60692) Proteasome subunit beta type 6 precursor (EC 3.4.25.1)| (Proteasome delta chain) (Macropain delta chain) (Multicatalytic endopeptidase complex delta chain) (Proteasome subunit Y) Length = 238 Score = 35.8 bits (81), Expect = 0.069 Identities = 16/30 (53%), Positives = 20/30 (66%) Frame = -2 Query: 504 RDGASGGVVRTVTINEEGVKRSFHPGDILP 415 RDG+SGGV+R I E GV+R GD +P Sbjct: 199 RDGSSGGVIRLAAIQESGVERQVLLGDQIP 228
>PSB9_RAT (P28077) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Proteasome chain 7) (Macropain chain 7) (Multicatalytic endopeptidase complex chain 7) (RING12 protein) (Low molecular mass protein 2) Length = 219 Score = 35.8 bits (81), Expect = 0.069 Identities = 17/35 (48%), Positives = 23/35 (65%) Frame = -2 Query: 504 RDGASGGVVRTVTINEEGVKRSFHPGDILPLWHEE 400 RDG+SGGV+ VTI +GV GD LP +++E Sbjct: 185 RDGSSGGVIYLVTITADGVDHRVILGDELPKFYDE 219
>PSB6_HUMAN (P28072) Proteasome subunit beta type 6 precursor (EC 3.4.25.1)| (Proteasome delta chain) (Macropain delta chain) (Multicatalytic endopeptidase complex delta chain) (Proteasome subunit Y) Length = 239 Score = 35.0 bits (79), Expect = 0.12 Identities = 16/30 (53%), Positives = 20/30 (66%) Frame = -2 Query: 504 RDGASGGVVRTVTINEEGVKRSFHPGDILP 415 RDG+SGGV+R I E GV+R GD +P Sbjct: 200 RDGSSGGVIRLAAIAESGVERQVLLGDQIP 229
>PSB6_RAT (P28073) Proteasome subunit beta type 6 precursor (EC 3.4.25.1)| (Proteasome delta chain) (Macropain delta chain) (Multicatalytic endopeptidase complex delta chain) (Proteasome subunit Y) (Proteasome chain 5) Length = 238 Score = 34.7 bits (78), Expect = 0.15 Identities = 15/30 (50%), Positives = 20/30 (66%) Frame = -2 Query: 504 RDGASGGVVRTVTINEEGVKRSFHPGDILP 415 RDG+SGGV+R I + GV+R GD +P Sbjct: 199 RDGSSGGVIRLAAIQQSGVERQVLLGDQIP 228
>PSB9_MUSSI (O35524) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Proteasome chain 7) (Macropain chain 7) (Multicatalytic endopeptidase complex chain 7) (RING12 protein) (Low molecular mass protein 2) Length = 219 Score = 34.7 bits (78), Expect = 0.15 Identities = 17/35 (48%), Positives = 22/35 (62%) Frame = -2 Query: 504 RDGASGGVVRTVTINEEGVKRSFHPGDILPLWHEE 400 RDG+SGGV+ VTI GV GD LP +++E Sbjct: 185 RDGSSGGVIYLVTITAAGVDHRVILGDELPRFYDE 219
>PSB9_MUSMB (O35522) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Proteasome chain 7) (Macropain chain 7) (Multicatalytic endopeptidase complex chain 7) (RING12 protein) (Low molecular mass protein 2) Length = 219 Score = 34.7 bits (78), Expect = 0.15 Identities = 17/35 (48%), Positives = 22/35 (62%) Frame = -2 Query: 504 RDGASGGVVRTVTINEEGVKRSFHPGDILPLWHEE 400 RDG+SGGV+ VTI GV GD LP +++E Sbjct: 185 RDGSSGGVIYLVTITAAGVDHRVILGDELPKFYDE 219
>PSB9_MOUSE (P28076) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Proteasome chain 7) (Macropain chain 7) (Multicatalytic endopeptidase complex chain 7) (RING12 protein) (Low molecular mass protein 2) (LMP-2d) Length = 219 Score = 34.7 bits (78), Expect = 0.15 Identities = 17/35 (48%), Positives = 22/35 (62%) Frame = -2 Query: 504 RDGASGGVVRTVTINEEGVKRSFHPGDILPLWHEE 400 RDG+SGGV+ VTI GV GD LP +++E Sbjct: 185 RDGSSGGVIYLVTITAAGVDHRVILGDELPKFYDE 219
>PSB9_MUSPL (O35523) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Proteasome chain 7) (Macropain chain 7) (Multicatalytic endopeptidase complex chain 7) (RING12 protein) (Low molecular mass protein 2) Length = 219 Score = 34.3 bits (77), Expect = 0.20 Identities = 17/35 (48%), Positives = 22/35 (62%) Frame = -2 Query: 504 RDGASGGVVRTVTINEEGVKRSFHPGDILPLWHEE 400 RDG+SGGV+ VTI GV GD LP +++E Sbjct: 185 RDGSSGGVIYLVTITVAGVDHRVILGDELPKFYDE 219
>PSB9_SALSA (Q9DD33) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Low molecular mass protein 2) Length = 217 Score = 34.3 bits (77), Expect = 0.20 Identities = 15/37 (40%), Positives = 26/37 (70%) Frame = -2 Query: 510 IARDGASGGVVRTVTINEEGVKRSFHPGDILPLWHEE 400 ++RDG+SGGV VTI+E+G + G+ LP ++++ Sbjct: 181 MSRDGSSGGVAYLVTIDEKGAEEKCILGNELPTFYDQ 217
>PSB9_ONCMY (Q9PT26) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Low molecular mass protein 2) Length = 217 Score = 34.3 bits (77), Expect = 0.20 Identities = 15/37 (40%), Positives = 26/37 (70%) Frame = -2 Query: 510 IARDGASGGVVRTVTINEEGVKRSFHPGDILPLWHEE 400 ++RDG+SGGV VTI+E+G + G+ LP ++++ Sbjct: 181 MSRDGSSGGVAYLVTIDEKGAEEKCILGNELPTFYDQ 217
>PSB9_HUMAN (P28065) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Proteasome chain 7) (Macropain chain 7) (Multicatalytic endopeptidase complex chain 7) (RING12 protein) (Low molecular mass protein 2) Length = 219 Score = 33.5 bits (75), Expect = 0.34 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = -2 Query: 510 IARDGASGGVVRTVTINEEGVKRSFHPGDILPLWHEE 400 ++RDG+SGGV+ VTI GV G+ LP +++E Sbjct: 183 MSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE 219
>KTNB1_ARATH (Q8H0T9) Katanin p80 WD40-containing subunit B1 homolog 1| Length = 837 Score = 33.5 bits (75), Expect = 0.34 Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 1/66 (1%) Frame = +1 Query: 268 SAESIPS-NVRPKSRTRHRYNRISLDHRIRAPSCENVKERVLGLHLFMPQWQYVTRVEAP 444 S+ ++P+ N+RP + + R N + ++ I +PS EN+ E ++G H Q+V+ +++ Sbjct: 632 SSGNMPAPNIRPSNMFKQRGNHMPVEQGIDSPSEENIVEDIMGKHN-----QFVSSMQSR 686 Query: 445 LNTLLV 462 L L V Sbjct: 687 LAKLQV 692
>PSB6_SCHPO (O43063) Probable proteasome subunit beta type 6 precursor (EC| 3.4.25.1) Length = 226 Score = 33.1 bits (74), Expect = 0.45 Identities = 12/23 (52%), Positives = 19/23 (82%) Frame = -2 Query: 504 RDGASGGVVRTVTINEEGVKRSF 436 RDG+SGG +R V +N++G++R F Sbjct: 190 RDGSSGGTIRMVILNKDGMERKF 212
>PSB9_MUSDU (O35521) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Proteasome chain 7) (Macropain chain 7) (Multicatalytic endopeptidase complex chain 7) (RING12 protein) (Low molecular mass protein 2) Length = 219 Score = 33.1 bits (74), Expect = 0.45 Identities = 17/35 (48%), Positives = 21/35 (60%) Frame = -2 Query: 504 RDGASGGVVRTVTINEEGVKRSFHPGDILPLWHEE 400 RDG+SGGV+ VTI GV GD LP ++ E Sbjct: 185 RDGSSGGVIYLVTITAAGVDHRVILGDELPKFYGE 219
>PSB9_ORYLA (Q8UW64) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Low molecular mass protein 2) Length = 217 Score = 29.3 bits (64), Expect = 6.5 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -2 Query: 504 RDGASGGVVRTVTINEEGVKRSFHPGDILPLWHEE 400 RDG+SGGV VTI+E G+ LP + ++ Sbjct: 183 RDGSSGGVAYIVTIDEHSTDEKVILGNDLPTFFDQ 217
>EAF3_CANAL (Q59K07) Chromatin modification-related protein EAF3| Length = 369 Score = 28.9 bits (63), Expect = 8.5 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = +2 Query: 35 LFSFPGRLSTTTPGSISFSI*LSQV 109 + SFPG LSTTT IS S+ +S++ Sbjct: 314 IISFPGLLSTTTMDGISLSVLISEL 338
>APEH_MOUSE (Q8R146) Acylamino-acid-releasing enzyme (EC 3.4.19.1) (AARE)| (Acyl-peptide hydrolase) (APH) (Acylaminoacyl-peptidase) Length = 732 Score = 28.9 bits (63), Expect = 8.5 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = +2 Query: 392 GFISSCHSGSMSPGWKLLLTPSSLIVTVRTTPPLAPS 502 G ++S +G + WKLL L+V +TP L PS Sbjct: 396 GSVTSLTAGGSAGSWKLLTIDRDLMVAQFSTPNLPPS 432 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,046,188 Number of Sequences: 219361 Number of extensions: 1551524 Number of successful extensions: 4434 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4311 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4432 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
