ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart26b02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_184593.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1224 Score = 129 bits (65), Expect = 9e-27 Identities = 101/113 (89%) Strand = Plus / Minus Query: 341 ggcggcgcggactttagctcctccagtgctgacttcacctcgtcctgcagcaggtcgatc 400 ||||||| |||||| ||||||||||| || | | |||||| |||||||||||||||||| Sbjct: 1211 ggcggcgtggacttgagctcctccagcgccgtcctcacctggtcctgcagcaggtcgatg 1152 Query: 401 cgccgcaggtacacctccagctccagaattcgctgctgcctccacttctcccc 453 ||||| |||||||||||||||||||| || ||||||||||||||| ||||||| Sbjct: 1151 cgccggaggtacacctccagctccaggatccgctgctgcctccacctctcccc 1099
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 129 bits (65), Expect = 9e-27 Identities = 101/113 (89%) Strand = Plus / Plus Query: 341 ggcggcgcggactttagctcctccagtgctgacttcacctcgtcctgcagcaggtcgatc 400 ||||||| |||||| ||||||||||| || | | |||||| |||||||||||||||||| Sbjct: 14376566 ggcggcgtggacttgagctcctccagcgccgtcctcacctggtcctgcagcaggtcgatg 14376625 Query: 401 cgccgcaggtacacctccagctccagaattcgctgctgcctccacttctcccc 453 ||||| |||||||||||||||||||| || ||||||||||||||| ||||||| Sbjct: 14376626 cgccggaggtacacctccagctccaggatccgctgctgcctccacctctcccc 14376678 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 gcaattttgatatatatattt 207 ||||||||||||||||||||| Sbjct: 23346526 gcaattttgatatatatattt 23346546
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 129 bits (65), Expect = 9e-27 Identities = 101/113 (89%) Strand = Plus / Plus Query: 341 ggcggcgcggactttagctcctccagtgctgacttcacctcgtcctgcagcaggtcgatc 400 ||||||| |||||| ||||||||||| || | | |||||| |||||||||||||||||| Sbjct: 125795 ggcggcgtggacttgagctcctccagcgccgtcctcacctggtcctgcagcaggtcgatg 125854 Query: 401 cgccgcaggtacacctccagctccagaattcgctgctgcctccacttctcccc 453 ||||| |||||||||||||||||||| || ||||||||||||||| ||||||| Sbjct: 125855 cgccggaggtacacctccagctccaggatccgctgctgcctccacctctcccc 125907
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 129 bits (65), Expect = 9e-27 Identities = 101/113 (89%) Strand = Plus / Plus Query: 341 ggcggcgcggactttagctcctccagtgctgacttcacctcgtcctgcagcaggtcgatc 400 ||||||| |||||| ||||||||||| || | | |||||| |||||||||||||||||| Sbjct: 14371541 ggcggcgtggacttgagctcctccagcgccgtcctcacctggtcctgcagcaggtcgatg 14371600 Query: 401 cgccgcaggtacacctccagctccagaattcgctgctgcctccacttctcccc 453 ||||| |||||||||||||||||||| || ||||||||||||||| ||||||| Sbjct: 14371601 cgccggaggtacacctccagctccaggatccgctgctgcctccacctctcccc 14371653 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 gcaattttgatatatatattt 207 ||||||||||||||||||||| Sbjct: 23339554 gcaattttgatatatatattt 23339574
>ref|XM_479250.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1297 Score = 69.9 bits (35), Expect = 8e-09 Identities = 74/87 (85%) Strand = Plus / Minus Query: 373 cttcacctcgtcctgcagcaggtcgatccgccgcaggtacacctccagctccagaattcg 432 |||||||| |||||||||||| |||||||| || ||| ||||||||||||| || || Sbjct: 947 cttcacctggtcctgcagcagctcgatccgtttcaagtatacctccagctccaatatacg 888 Query: 433 ctgctgcctccacttctccccctccat 459 ||||| |||||| |||||||| ||||| Sbjct: 887 ctgcttcctccatttctccccttccat 861
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 69.9 bits (35), Expect = 8e-09 Identities = 74/87 (85%) Strand = Plus / Minus Query: 373 cttcacctcgtcctgcagcaggtcgatccgccgcaggtacacctccagctccagaattcg 432 |||||||| |||||||||||| |||||||| || ||| ||||||||||||| || || Sbjct: 26360519 cttcacctggtcctgcagcagctcgatccgtttcaagtatacctccagctccaatatacg 26360460 Query: 433 ctgctgcctccacttctccccctccat 459 ||||| |||||| |||||||| ||||| Sbjct: 26360459 ctgcttcctccatttctccccttccat 26360433
>dbj|AP003749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_D11 Length = 109399 Score = 69.9 bits (35), Expect = 8e-09 Identities = 74/87 (85%) Strand = Plus / Minus Query: 373 cttcacctcgtcctgcagcaggtcgatccgccgcaggtacacctccagctccagaattcg 432 |||||||| |||||||||||| |||||||| || ||| ||||||||||||| || || Sbjct: 14759 cttcacctggtcctgcagcagctcgatccgtttcaagtatacctccagctccaatatacg 14700 Query: 433 ctgctgcctccacttctccccctccat 459 ||||| |||||| |||||||| ||||| Sbjct: 14699 ctgcttcctccatttctccccttccat 14673
>dbj|AK068356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146D06, full insert sequence Length = 1297 Score = 69.9 bits (35), Expect = 8e-09 Identities = 74/87 (85%) Strand = Plus / Minus Query: 373 cttcacctcgtcctgcagcaggtcgatccgccgcaggtacacctccagctccagaattcg 432 |||||||| |||||||||||| |||||||| || ||| ||||||||||||| || || Sbjct: 947 cttcacctggtcctgcagcagctcgatccgtttcaagtatacctccagctccaatatacg 888 Query: 433 ctgctgcctccacttctccccctccat 459 ||||| |||||| |||||||| ||||| Sbjct: 887 ctgcttcctccatttctccccttccat 861
>gb|AY109647.1| Zea mays CL5260_1 mRNA sequence Length = 1314 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 413 acctccagctccagaattcgctgctgcctccactt 447 ||||| ||||||||||| |||||||||||||||| Sbjct: 1230 acctcaagctccagaatctgctgctgcctccactt 1196
>gb|AC119868.2| Homo sapiens chromosome 18, clone RP11-465I4, complete sequence Length = 174780 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 186 tgcaattttgatatatatattt 207 |||||||||||||||||||||| Sbjct: 39597 tgcaattttgatatatatattt 39576
>gb|AC068254.6| Homo sapiens chromosome 18, clone RP11-543H23, complete sequence Length = 219260 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 186 tgcaattttgatatatatattt 207 |||||||||||||||||||||| Sbjct: 183417 tgcaattttgatatatatattt 183396
>gb|AC146097.4| Pan troglodytes BAC clone RP43-50K16 from 7, complete sequence Length = 183088 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 aagttccacgaacggaaggag 53 ||||||||||||||||||||| Sbjct: 178829 aagttccacgaacggaaggag 178809
>gb|AC147147.2| Pan troglodytes BAC clone CH251-230I19 from Y, complete sequence Length = 143402 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 tctgtaataaaatctttaaaa 34 ||||||||||||||||||||| Sbjct: 121559 tctgtaataaaatctttaaaa 121539
>dbj|BS000620.1| Pan troglodytes chromosome Y clone:PTB-548J12, complete sequences Length = 199682 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 tctgtaataaaatctttaaaa 34 ||||||||||||||||||||| Sbjct: 16698 tctgtaataaaatctttaaaa 16678
>dbj|BS000574.1| Pan troglodytes chromosome Y clone:PTB-031D23, complete sequences Length = 142928 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 tctgtaataaaatctttaaaa 34 ||||||||||||||||||||| Sbjct: 137101 tctgtaataaaatctttaaaa 137081
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 tctgtaataaaatctttaaaa 34 ||||||||||||||||||||| Sbjct: 16085830 tctgtaataaaatctttaaaa 16085850
>gb|AC010133.4|AC010133 Homo sapiens clone RP11-118E9, complete sequence Length = 152074 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 tctgtaataaaatctttaaaa 34 ||||||||||||||||||||| Sbjct: 129959 tctgtaataaaatctttaaaa 129939
>gb|AC097280.8| Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence Length = 129647 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 gcaattttgatatatatattt 207 ||||||||||||||||||||| Sbjct: 29182 gcaattttgatatatatattt 29202
>gb|AC115047.19| Mus musculus chromosome 10, clone RP24-330D16, complete sequence Length = 193923 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 atatatatatttgtctcctg 215 |||||||||||||||||||| Sbjct: 137384 atatatatatttgtctcctg 137365
>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence Length = 153766 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 gaacggaaggagtatatata 61 |||||||||||||||||||| Sbjct: 117116 gaacggaaggagtatatata 117097
>gb|AC005538.3| Homo sapiens BAC clone RP11-332L11 from 2, complete sequence Length = 193627 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 305 ccaaggaatggtgaagctggccag 328 |||||||||||||||||| ||||| Sbjct: 147181 ccaaggaatggtgaagcttgccag 147158
>gb|AC145377.2| Pan troglodytes BAC clone RP43-11P19 from 7, complete sequence Length = 194463 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tgtaataaaatctttaaaag 35 |||||||||||||||||||| Sbjct: 66584 tgtaataaaatctttaaaag 66565
>ref|XM_453748.1| Kluyveromyces lactis NRRL Y-1140, KLLA0D15543g predicted mRNA Length = 1620 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 acaattagtaggaacagcgt 176 |||||||||||||||||||| Sbjct: 1047 acaattagtaggaacagcgt 1066
>gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence Length = 146175 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 438 gcctccacttctccccctccattg 461 ||||||||| |||||||||||||| Sbjct: 54015 gcctccactcctccccctccattg 54038
>gb|AC105459.1| Homo sapiens BAC clone RP11-115D14 from 7, complete sequence Length = 146098 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 attttgatatatatatttgt 209 |||||||||||||||||||| Sbjct: 109489 attttgatatatatatttgt 109508
>gb|AC122279.3| Mus musculus BAC clone RP23-237J8 from chromosome 14, complete sequence Length = 203640 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 taaaatctttaaaagttcca 40 |||||||||||||||||||| Sbjct: 171409 taaaatctttaaaagttcca 171428
>gb|AC004936.2| Homo sapiens PAC clone RP5-959C21 from 7, complete sequence Length = 139949 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 tgtaataaaatctttaaaag 35 |||||||||||||||||||| Sbjct: 132673 tgtaataaaatctttaaaag 132692
>ref|XM_669755.1| Plasmodium berghei strain ANKA hypothetical protein (PB000814.01.0) partial mRNA Length = 1308 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 caattttgatatatatattt 207 |||||||||||||||||||| Sbjct: 738 caattttgatatatatattt 757
>gb|AC109214.6| Mus musculus chromosome 10, clone RP23-352E22, complete sequence Length = 175569 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 atgtagtctgtaataaaatcttta 31 ||||||||||||||||||| |||| Sbjct: 59834 atgtagtctgtaataaaattttta 59857
>gb|AC145518.1| Pan troglodytes BAC clone RP43-21J10 from 7, complete sequence Length = 178086 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 tgtaataaaatctttaaaag 35 |||||||||||||||||||| Sbjct: 19747 tgtaataaaatctttaaaag 19766
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 385 ctgcagcaggtcgatccgccgcag 408 |||||||||||||||| ||||||| Sbjct: 820582 ctgcagcaggtcgatcagccgcag 820605
>emb|AL355586.27| Human DNA sequence from clone RP11-59I9 on chromosome 6q16.3-21 Contains two novel genes, the 3' end of the C6orf210 gene for chromosome 6 open reading frame 210 and three CpG islands, complete sequence Length = 185311 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 gctgctgcctccacttctcc 451 |||||||||||||||||||| Sbjct: 181302 gctgctgcctccacttctcc 181283
>emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome D of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1715506 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 acaattagtaggaacagcgt 176 |||||||||||||||||||| Sbjct: 1314806 acaattagtaggaacagcgt 1314825
>gb|AC153615.4| Mus musculus 6 BAC RP23-24I14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 183030 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 atgtagtctgtaataaaatcttta 31 ||||||||||||||||||| |||| Sbjct: 131489 atgtagtctgtaataaaattttta 131512
>gb|AE014179.1| Mus musculus piebald deletion region section 7 of 11 of the complete sequence Length = 400029 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 taaaatctttaaaagttcca 40 |||||||||||||||||||| Sbjct: 371932 taaaatctttaaaagttcca 371913
>gb|AC061963.13| Mus musculus chromosome 9, clone RP23-23P9, complete sequence Length = 201757 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ctgtaataaaatctttaaaa 34 |||||||||||||||||||| Sbjct: 80246 ctgtaataaaatctttaaaa 80265
>gb|AC146058.2| Pan troglodytes BAC clone RP43-92A10 from chromosome 7, complete sequence Length = 165469 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 attttgatatatatatttgt 209 |||||||||||||||||||| Sbjct: 28444 attttgatatatatatttgt 28425
>gb|AC161378.2| Mus musculus BAC clone RP23-202A6 from chromosome 16, complete sequence Length = 219298 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 aattttgatatatatatttg 208 |||||||||||||||||||| Sbjct: 134916 aattttgatatatatatttg 134897
>gb|AC154429.4| Mus musculus BAC clone RP24-202G18 from chromosome 16, complete sequence Length = 170875 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 aattttgatatatatatttg 208 |||||||||||||||||||| Sbjct: 89453 aattttgatatatatatttg 89434
>dbj|AK048776.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230061I23 product:unclassifiable, full insert sequence Length = 2740 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ctgtaataaaatctttaaaa 34 |||||||||||||||||||| Sbjct: 541 ctgtaataaaatctttaaaa 522
>gb|AC105061.16| Mus musculus chromosome 19, clone RP23-117I10, complete sequence Length = 210038 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 tttgatatatatatttgtct 211 |||||||||||||||||||| Sbjct: 110753 tttgatatatatatttgtct 110734
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 438 gcctccacttctccccctccattg 461 ||||||||| |||||||||||||| Sbjct: 1836185 gcctccactcctccccctccattg 1836208
>gb|AF151663.2| Nereis virens labial homeobox protein (lab) gene, partial cds Length = 827 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 aattttgatatatatatttgtctc 212 ||||||||||||||| |||||||| Sbjct: 238 aattttgatatatatttttgtctc 261
>gb|AC079163.5| Homo sapiens BAC clone RP11-707K3 from 2, complete sequence Length = 169771 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 tgcaattttgatatatatat 205 |||||||||||||||||||| Sbjct: 3712 tgcaattttgatatatatat 3693
>gb|AC159031.1| Pan troglodytes BAC clone CH251-381B17 from chromosome unknown, complete sequence Length = 177940 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 305 ccaaggaatggtgaagctggccag 328 |||||||||||||||||| ||||| Sbjct: 92779 ccaaggaatggtgaagcttgccag 92802
>gb|AC147975.3| Pan troglodytes BAC clone CH251-510J15 from chromosome 7, complete sequence Length = 258316 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 attttgatatatatatttgt 209 |||||||||||||||||||| Sbjct: 216071 attttgatatatatatttgt 216090
>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome Length = 1308759 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 taataaaatctttaaaagtt 37 |||||||||||||||||||| Sbjct: 803580 taataaaatctttaaaagtt 803599
>gb|AC093451.25| Mus musculus strain C57BL/6J chromosome 8 clone rp23-340n2, complete sequence Length = 198760 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 taaaatctttaaaagttcca 40 |||||||||||||||||||| Sbjct: 104198 taaaatctttaaaagttcca 104179
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 438 gcctccacttctccccctccattg 461 ||||||||| |||||||||||||| Sbjct: 1833906 gcctccactcctccccctccattg 1833929
>gb|AC146601.3| Mus musculus BAC clone RP23-315I4 from 14, complete sequence Length = 172271 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 taaaatctttaaaagttcca 40 |||||||||||||||||||| Sbjct: 92813 taaaatctttaaaagttcca 92794
>gb|AC140276.3| Mus musculus BAC clone RP23-336J13 from 8, complete sequence Length = 211518 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 taaaatctttaaaagttcca 40 |||||||||||||||||||| Sbjct: 190014 taaaatctttaaaagttcca 189995
>gb|AC166048.3| Mus musculus BAC clone RP24-266C15 from chromosome 9, complete sequence Length = 144816 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ctgtaataaaatctttaaaa 34 |||||||||||||||||||| Sbjct: 135474 ctgtaataaaatctttaaaa 135455 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,388,582 Number of Sequences: 3902068 Number of extensions: 5388582 Number of successful extensions: 114036 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113483 Number of HSP's gapped (non-prelim): 553 length of query: 498 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 476 effective length of database: 17,147,199,772 effective search space: 8162067091472 effective search space used: 8162067091472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
