ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart26a09 |
|---|---|
| Clone Library Name | barley_pub |
>ACLY_MOUSE (Q91V92) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1091 Score = 88.6 bits (218), Expect = 6e-18 Identities = 44/82 (53%), Positives = 54/82 (65%) Frame = -2 Query: 435 IGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVWRGGPNYQTGLAKMRALGSELG 256 IGG IANFT+VAATF GI+RA+R+ + LK V I+V RGGPNYQ GL M +G G Sbjct: 340 IGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTG 399 Query: 255 FPIEVYGPEAPMTGICKQAIDY 190 PI V+G E MT I A+ + Sbjct: 400 IPIHVFGTETHMTAIVGMALGH 421
>ACLY_HUMAN (P53396) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1101 Score = 88.6 bits (218), Expect = 6e-18 Identities = 44/82 (53%), Positives = 54/82 (65%) Frame = -2 Query: 435 IGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVWRGGPNYQTGLAKMRALGSELG 256 IGG IANFT+VAATF GI+RA+R+ + LK V I+V RGGPNYQ GL M +G G Sbjct: 340 IGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTG 399 Query: 255 FPIEVYGPEAPMTGICKQAIDY 190 PI V+G E MT I A+ + Sbjct: 400 IPIHVFGTETHMTAIVGMALGH 421
>ACLY_RAT (P16638) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1100 Score = 87.8 bits (216), Expect = 1e-17 Identities = 44/79 (55%), Positives = 52/79 (65%) Frame = -2 Query: 435 IGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVWRGGPNYQTGLAKMRALGSELG 256 IGG IANFT+VAATF GI+RA+R+ + LK V I+V RGGPNYQ GL M +G G Sbjct: 340 IGGSIANFTNVAATFKGIVRAIRDYQGSLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTG 399 Query: 255 FPIEVYGPEAPMTGICKQA 199 PI V+G E MT I A Sbjct: 400 IPIHVFGTETHMTAIVGMA 418
>ACLY_CAEEL (P53585) Probable ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1106 Score = 85.9 bits (211), Expect = 4e-17 Identities = 43/80 (53%), Positives = 54/80 (67%) Frame = -2 Query: 435 IGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVWRGGPNYQTGLAKMRALGSELG 256 IGG IANFT+VA TF GI+RA SKLK +V I+V RGGPNYQ GL +++ ++L Sbjct: 352 IGGSIANFTNVAKTFGGIVRAFETFVSKLKEHKVTIFVRRGGPNYQEGLRRIKDAATKLE 411 Query: 255 FPIEVYGPEAPMTGICKQAI 196 PI V+GPE MT I A+ Sbjct: 412 LPIHVFGPETHMTAIVGAAL 431
>LCMT2_ASPFU (Q4WVD1) Leucine carboxyl methyltransferase 2 (EC 2.1.1.-)| Length = 1047 Score = 30.4 bits (67), Expect = 1.9 Identities = 14/29 (48%), Positives = 20/29 (68%) Frame = +1 Query: 28 LRSWVTTVVPFPHKTDLSLFASHEQFFIL 114 LR+W+ TV PF + +LFASH +F+L Sbjct: 296 LRAWLDTVEPFDEWEEFALFASH--YFLL 322
>COAT_PAVBO (P07297) Coat protein VP2 [Contains: Coat protein VP3]| Length = 673 Score = 30.4 bits (67), Expect = 1.9 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Frame = -1 Query: 433 WRGYRKLH*CRCYIQWHHSGFKREGIQIKGCKGEHLCLARWSKLPNWTR-QNASPRIRAW 257 +R Y +L R + HH + +Q G K ++L + R +K PN R QNA+ R W Sbjct: 376 YRIYIQLWRLRMDRKQHHIQHASDDVQSTGQKQKNLLIQR-TKQPNKQRFQNAALRTSNW 434 Query: 256 FSN*GLWTRGPNDWNLQ 206 S G+ RG ++ LQ Sbjct: 435 MSGPGI-ARGTHNATLQ 450
>NAC_METTM (P0C0K9) Nascent polypeptide-associated complex protein| Length = 117 Score = 30.0 bits (66), Expect = 2.5 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = -2 Query: 384 IIRALREKESKLKAARVNIYVWRGGPNYQ-TGLAKMRALGSELGFP 250 ++ L+ KE +K +VN+ + G YQ TG A+ R+L +E+ P Sbjct: 35 VVIKLKRKEIIIKNPKVNVMEFMGQKTYQVTGKARERSLEAEMEIP 80
>NAC_METTH (O26279) Nascent polypeptide-associated complex protein| Length = 117 Score = 30.0 bits (66), Expect = 2.5 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = -2 Query: 384 IIRALREKESKLKAARVNIYVWRGGPNYQ-TGLAKMRALGSELGFP 250 ++ L+ KE +K +VN+ + G YQ TG A+ R+L +E+ P Sbjct: 35 VVIKLKRKEIIIKNPKVNVMEFMGQKTYQVTGKARERSLEAEMEIP 80
>SUREJ_STRPU (Q26627) Sperm receptor for egg jelly precursor (suREJ)| Length = 1450 Score = 30.0 bits (66), Expect = 2.5 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +1 Query: 223 WGLWSINLNWKTKL*S*GSHFGESSLVVW 309 +G++S+NLN KT+L + G GE ++ W Sbjct: 549 YGIYSLNLNAKTRLKTSGEVTGEKEIISW 577
>NR1H4_MOUSE (Q60641) Bile acid receptor (Farnesoid X-activated receptor)| (Farnesol receptor HRR-1) (Retinoid X receptor-interacting protein 14) (RXR-interacting protein 14) Length = 488 Score = 29.6 bits (65), Expect = 3.3 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 17/77 (22%) Frame = -1 Query: 394 IQWHHS----GFKREGIQIKGCKG-----------EHLCLARWSKLPNWTRQNASPRIRA 260 I HHS GF +G+ +K KG ++L L +S N P+I + Sbjct: 14 ISLHHSHRLSGFVPDGMSVKPAKGMLTEHAAGPLGQNLDLESYSPYNNVPFPQVQPQISS 73 Query: 259 --WFSN*GLWTRGPNDW 215 ++SN G + + P DW Sbjct: 74 SSYYSNLGFYPQQPEDW 90
>UL76_HCMVA (P16725) Protein UL76| Length = 325 Score = 29.6 bits (65), Expect = 3.3 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = -2 Query: 405 VAATFSGIIRALREKESKLKAARVNIYVW-RGGPNYQTGLAKMRALG 268 +AAT ++R R K + L AR + RGG N + GLA+ RA G Sbjct: 201 LAATRRRLLRTARGKRAALPRARASAVAGGRGGDNARRGLARGRAHG 247
>KDSA_SYNPX (Q7U9S3) 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55)| (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS) Length = 283 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%) Frame = -2 Query: 363 KESKLKAARVNIYVWRGGPNYQTGLAKMRALGSELGFPI--EVYGPE 229 K S KA R +I+ +RG P + GL ++A+ LG P+ +V+ PE Sbjct: 55 KASYDKANRSSIHSFRG-PGLEAGLQILQAVKDTLGIPVITDVHSPE 100
>FUMH_MACFA (Q60HF9) Fumarate hydratase, mitochondrial precursor (EC 4.2.1.2)| (Fumarase) Length = 510 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/61 (29%), Positives = 30/61 (49%) Frame = -2 Query: 393 FSGIIRALREKESKLKAARVNIYVWRGGPNYQTGLAKMRALGSELGFPIEVYGPEAPMTG 214 FSG ++ ++ +++KAA IY G G A L + +GF +V A +TG Sbjct: 248 FSGYVQQVKYAVTRIKAAMPRIYELAAG-----GTAVGTGLNTRIGFAEKVAAKVAALTG 302 Query: 213 I 211 + Sbjct: 303 L 303
>FUMH_HUMAN (P07954) Fumarate hydratase, mitochondrial precursor (EC 4.2.1.2)| (Fumarase) Length = 510 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/61 (29%), Positives = 30/61 (49%) Frame = -2 Query: 393 FSGIIRALREKESKLKAARVNIYVWRGGPNYQTGLAKMRALGSELGFPIEVYGPEAPMTG 214 FSG ++ ++ +++KAA IY G G A L + +GF +V A +TG Sbjct: 248 FSGYVQQVKYAMTRIKAAMPRIYELAAG-----GTAVGTGLNTRIGFAEKVAAKVAALTG 302 Query: 213 I 211 + Sbjct: 303 L 303
>FACE2_DROME (Q9U1H8) CAAX prenyl protease 2 (EC 3.4.22.-) (Prenyl| protein-specific endoprotease 2) (Farnesylated proteins-converting enzyme 2) (FACE-2) (Protein severas) Length = 302 Score = 28.5 bits (62), Expect = 7.4 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +3 Query: 222 LGPLVHKPQLENQALILGLAFWRVQFGSLDHLAKHKCSPL 341 LGP+ Q E+ L +WR FGS+ + H +PL Sbjct: 119 LGPIFVNMQNESVRSYFDLDYWRGSFGSIIWVRNHVIAPL 158
>MASZ_BRAJA (Q89UE3) Malate synthase G (EC 2.3.3.9)| Length = 721 Score = 28.5 bits (62), Expect = 7.4 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +3 Query: 225 GPLVHKPQLENQALILGLAFWRVQFGSLDHLAKH 326 GP++ K +++ QA I W V G +D L H Sbjct: 472 GPMIRKNEMKAQAWIKAYEDWNVDMGLIDGLPGH 505
>APN2_YEAST (P38207) DNA-(apurinic or apyrimidinic site) lyase 2 (EC 4.2.99.18)| (AP endonuclease 2) (Apurinic-apyrimidinic endonuclease 2) Length = 520 Score = 28.5 bits (62), Expect = 7.4 Identities = 16/69 (23%), Positives = 33/69 (47%) Frame = -1 Query: 373 FKREGIQIKGCKGEHLCLARWSKLPNWTRQNASPRIRAWFSN*GLWTRGPNDWNLQASH* 194 F+ + I + K E L +++W ++ + + P+ R +S G W R P + +H Sbjct: 50 FRADIITFQELKTEKLSISKWGRVDGFYSFISIPQTRKGYSGVGCWIRIP-----EKNHP 104 Query: 193 LRHG*SMIR 167 L H +++ Sbjct: 105 LYHALQVVK 113
>FUMH_PIG (P10173) Fumarate hydratase, mitochondrial (EC 4.2.1.2) (Fumarase)| Length = 466 Score = 28.5 bits (62), Expect = 7.4 Identities = 18/61 (29%), Positives = 30/61 (49%) Frame = -2 Query: 393 FSGIIRALREKESKLKAARVNIYVWRGGPNYQTGLAKMRALGSELGFPIEVYGPEAPMTG 214 FSG ++ ++ +++KAA IY G G A L + +GF +V A +TG Sbjct: 204 FSGYVQQVKYAITRIKAAMPRIYELAAG-----GTAVGTGLNTRIGFAEKVAAKVAALTG 258 Query: 213 I 211 + Sbjct: 259 L 259
>YADC_ECOLI (P31058) Hypothetical fimbrial-like protein yadC precursor| Length = 412 Score = 28.1 bits (61), Expect = 9.7 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = -3 Query: 161 YSSG-VYSCVHFVPYTFSIKNCSCEANRERSVLWGKGTTVVTQLRNN 24 YSSG + + VP+ S++NC N E ++ GK T TQL N Sbjct: 274 YSSGTIKNGASPVPFDISLQNCIRVRNIETKLVTGKVGTQNTQLLGN 320
>FUMH_RAT (P14408) Fumarate hydratase, mitochondrial precursor (EC 4.2.1.2)| (Fumarase) Length = 507 Score = 28.1 bits (61), Expect = 9.7 Identities = 18/61 (29%), Positives = 29/61 (47%) Frame = -2 Query: 393 FSGIIRALREKESKLKAARVNIYVWRGGPNYQTGLAKMRALGSELGFPIEVYGPEAPMTG 214 FSG ++ ++ ++KAA IY G G A L + +GF +V A +TG Sbjct: 245 FSGYVQQVQYAMERIKAAMPRIYELAAG-----GTAVGTGLNTRIGFAEKVAAKVAALTG 299 Query: 213 I 211 + Sbjct: 300 L 300 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,824,870 Number of Sequences: 219361 Number of extensions: 1485798 Number of successful extensions: 3648 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3594 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3648 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
