ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart26a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LGT_BDEBA (P60967) Prolipoprotein diacylglyceryl transferase (EC... 32 0.82
2OTC_ARCFU (O29013) Ornithine carbamoyltransferase (EC 2.1.3.3) (... 31 1.8
3PDR1_NICPL (Q949G3) Pleiotropic drug resistance protein 1 (NpPDR1) 30 2.4
4PDR7_ORYSA (Q8GU88) Putative pleiotropic drug resistance protein 7 30 2.4
5PDR1_TOBAC (Q76CU2) Pleiotropic drug resistance protein 1 (NtPDR1) 29 5.3
6GWT1_CRYNV (Q873N0) GPI-anchored wall transfer protein 1 (EC 2.3... 29 5.3
7PDR12_ORYSA (Q5Z9S8) Pleiotropic drug resistance protein 12 29 5.3
8SCRT_DROME (P45843) Protein scarlet 29 5.3
9PDR2_NICPL (Q2PCF1) Pleiotropic drug resistance protein 2 (NpPDR2) 29 6.9
10CPB2_CAEJA (Q6E3F0) Cytoplasmic polyadenylation element-binding ... 28 9.1

>LGT_BDEBA (P60967) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)|
          Length = 352

 Score = 32.0 bits (71), Expect = 0.82
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 314 DEGMRWVNVGVMMGFFLAYRIMCWAVLVRRA 222
           D G+RW  +  MMGF  AY ++ W    +RA
Sbjct: 15  DFGIRWYGLSYMMGFICAYILITWLAKRQRA 45



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>OTC_ARCFU (O29013) Ornithine carbamoyltransferase (EC 2.1.3.3) (OTCase)|
          Length = 307

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -2

Query: 446 DLLLINEYGGSARDRCVAWMGGDAMNGNGVCLS 348
           DLL I EY G  +D  +AW+G    +GN VC S
Sbjct: 136 DLLTIYEYRGDFKDVTLAWVG----DGNNVCNS 164



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>PDR1_NICPL (Q949G3) Pleiotropic drug resistance protein 1 (NpPDR1)|
          Length = 1436

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = -2

Query: 455 YPLDLLLINEYGGSARDRCVAWMGGDAMNGNGVCLSTGGDVLRGRGV--DEGMRWVNVGV 282
           Y ++ +L+NE+ G      VA          G     G  V+R RG   D    W+ VG 
Sbjct: 719 YSVNAILVNEFDGQKWKHIVA----------GGTEPLGAAVVRARGFFPDAYWYWIGVGA 768

Query: 281 MMGFFLAYRI 252
           + GF + + I
Sbjct: 769 LAGFIVMFNI 778



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>PDR7_ORYSA (Q8GU88) Putative pleiotropic drug resistance protein 7|
          Length = 1444

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = -2

Query: 455 YPLDLLLINEYGGSARDRCVAWMGGDAMNGNGVCLSTGGDVLRGRG--VDEGMRWVNVGV 282
           Y  + + +NE+ G + ++ V     D    N    + G  VL+ RG  VD    W+ VG 
Sbjct: 707 YAQNAIAVNEFLGHSWNKVV-----DPTQSND---TLGVQVLKVRGIFVDANWYWIGVGA 758

Query: 281 MMGFFLAYRIM 249
           ++G+ + + I+
Sbjct: 759 LLGYIMLFNIL 769



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>PDR1_TOBAC (Q76CU2) Pleiotropic drug resistance protein 1 (NtPDR1)|
          Length = 1434

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 20/78 (25%), Positives = 38/78 (48%)
 Frame = -2

Query: 470 VSMYRYPLDLLLINEYGGSARDRCVAWMGGDAMNGNGVCLSTGGDVLRGRGVDEGMRWVN 291
           +S   Y ++ +L+NE+ G   +  V   GG+   G+ V  S      RG   +    W+ 
Sbjct: 710 ISPMMYSVNSILVNEFDGKKWNHIVP--GGNETLGSTVVKS------RGFFPEAYWYWIG 761

Query: 290 VGVMMGFFLAYRIMCWAV 237
           VG ++GF + +   C+++
Sbjct: 762 VGALVGFTVVFN-FCYSL 778



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>GWT1_CRYNV (Q873N0) GPI-anchored wall transfer protein 1 (EC 2.3.-.-)|
           (Inositol acyltransferase GWT1)
          Length = 598

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
 Frame = -2

Query: 380 DAMNGNGVCLSTGGDVLRGRGVDEGMR------WVNVGVMMGFFLAYRIMCWAVLVRR 225
           DAMN NG+ +    ++L G  V+  M+      W+++GV+M + L    + W +  RR
Sbjct: 539 DAMNKNGLAIFLAANLLTGL-VNVSMKTMYAPAWLSMGVLMLYTLTISCVGWILKGRR 595



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>PDR12_ORYSA (Q5Z9S8) Pleiotropic drug resistance protein 12|
          Length = 1500

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
 Frame = -2

Query: 470 VSMYRYPLDLLLINEYGGSARDRCVAWMGGDAMNGNGVCLSTGGDVLRGRGV--DEGMRW 297
           VS   Y  + L +NE+          WM    ++ NGV    G  ++ G  +  D+   W
Sbjct: 731 VSPLMYGYNALAVNEFYSPR------WMNKFVLDNNGVPKRLGIALMEGANIFTDKNWFW 784

Query: 296 VNVGVMMGFFLAYRIMCWAVLV 231
           +    ++GF + + ++    LV
Sbjct: 785 IGAAGLLGFTMFFNVLFTLSLV 806



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>SCRT_DROME (P45843) Protein scarlet|
          Length = 666

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 356 CLSTGGDVLRGRGVDEGMRWVNVGVMMGFFLAYRIMCWAVLVRRASK 216
           C  TG DVL     +E   + N+  M+G +  + ++ +  L RRA K
Sbjct: 619 CFHTGQDVLDKYSFNESNVYRNLLAMVGLYFGFHLLGYYCLWRRARK 665



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>PDR2_NICPL (Q2PCF1) Pleiotropic drug resistance protein 2 (NpPDR2)|
          Length = 1461

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 365 NGVCLSTGGDVLRGRGV--DEGMRWVNVGVMMGFFLAYRIMCWAVL 234
           NG   + G  +L  RG+   E   W+++G + GF L + ++  A L
Sbjct: 746 NGSQPTVGKTLLHARGLFTTESWYWISIGALFGFSLLFNVLFIAAL 791



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>CPB2_CAEJA (Q6E3F0) Cytoplasmic polyadenylation element-binding protein 2|
          Length = 594

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 379 SPPIHATHLSLALPPYSLMSSRSSGYL 459
           +PP   +HLS+A PP+  ++   SGY+
Sbjct: 309 TPPAPLSHLSMASPPFGQINPFMSGYV 335


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,780,512
Number of Sequences: 219361
Number of extensions: 943925
Number of successful extensions: 3146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3144
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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