ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart26a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC108501.2| Oryza sativa (japonica cultivar-group) chromosome... 135 1e-28
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
3dbj|AK120526.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
4dbj|AK107169.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
5dbj|AK111176.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 1e-22
6gb|CP000088.1| Thermobifida fusca YX, complete genome 48 0.026
7gb|AC100491.9| Mus musculus chromosome 9, clone RP23-142M14, com... 46 0.10
8gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 1.6
9ref|NM_021789.2| Mus musculus trafficking protein particle compl... 40 6.4
10gb|BT018856.1| Zea mays clone EL01N0556E05.d mRNA sequence 40 6.4
11gb|BC038898.1| Mus musculus trafficking protein particle complex... 40 6.4
12gb|AF426907.1| Anolis terraealtae isolate marm-Sts cytochrome b ... 40 6.4
13gb|AC140884.2| Homo sapiens chromosome 16 clone RP11-1353K19, co... 40 6.4
14gb|AC145889.4| Pan troglodytes BAC clone RP43-8B7 from 7, comple... 40 6.4
15gb|AF231654.1| Strongylura timucu clone STRI-4308 cytochrome b o... 40 6.4
16gb|AF231653.1| Strongylura senegalensis cytochrome b oxidase (Cy... 40 6.4
17gb|AY334395.1| Camponotus americanus isolate Camer00 cytochrome ... 40 6.4
18gb|AY334385.1| Camponotus sayi isolate Csayi13 cytochrome oxidas... 40 6.4
19gb|AY327320.1| Noturus stigmosus specimen-voucher INHS88906 cyto... 40 6.4
20gb|AY327319.1| Noturus stigmosus specimen-voucher INHS45557 cyto... 40 6.4
21gb|AY327318.1| Noturus placidus isolate B specimen-voucher INHS9... 40 6.4
22gb|AY327317.1| Noturus placidus isolate A specimen-voucher INHS9... 40 6.4
23gb|AY327310.1| Noturus munitus isolate B specimen-voucher UAIC11... 40 6.4
24gb|AY327309.1| Noturus munitus isolate A specimen-voucher UAIC11... 40 6.4
25gb|AY327283.1| Noturus flavater specimen-voucher UAIC11868.02 cy... 40 6.4
26gb|AC142381.2| Homo sapiens chromosome 16 clone RP11-1166P10, co... 40 6.4
27gb|AC142086.3| Homo sapiens chromosome 16 clone RP11-989E6, comp... 40 6.4
28gb|AC122428.4| Mus musculus BAC clone RP24-175C20 from chromosom... 40 6.4
29gb|AC115119.5| Mus musculus BAC clone RP23-87M19 from 18, comple... 40 6.4
30gb|AC163161.4| Mus musculus BAC clone RP23-103A23 from chromosom... 40 6.4
31gb|BC025433.1| Mus musculus cDNA clone IMAGE:5006134, **** WARNI... 40 6.4
32emb|Z84468.1|HS299D3 Human DNA sequence from clone CTA-299D3 on ... 40 6.4
33gb|AC115090.8| Homo sapiens chromosome 17, clone CTC-861O14, com... 40 6.4
34gb|AC159300.3| Mus musculus BAC clone RP23-242D23 from chromosom... 40 6.4
35emb|AL606998.3|OSJN00125 Oryza sativa genomic DNA, chromosome 4,... 40 6.4
36emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4,... 40 6.4
37gb|AF186101.1| Strongylura senegalensis isolate 39b cytochrome b... 40 6.4
38gb|AF186100.1| Strongylura senegalensis isolate 39a cytochrome b... 40 6.4
39gb|AF186098.1| Strongylura timucu isolate 4a cytochrome b gene, ... 40 6.4
40gb|AF243913.1| Strongylura senegalensis isolate N39b cytochrome ... 40 6.4
41gb|AF243912.1| Strongylura senegalensis isolate N39a cytochrome ... 40 6.4
42gb|AF243862.1| Strongylura timucu isolate N4a cytochrome b (cytb... 40 6.4
43dbj|AK032168.1| Mus musculus adult male olfactory brain cDNA, RI... 40 6.4
44dbj|AK005276.1| Mus musculus adult male cerebellum cDNA, RIKEN f... 40 6.4
45dbj|AK053710.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 40 6.4
46dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
47gb|AC092144.4| Homo sapiens chromosome 16 clone RP11-572L10, com... 40 6.4
48gb|AC138801.2| Homo sapiens chromosome 16 clone CTD-3129O20, com... 40 6.4
49gb|AF233340.1|AF233340 Mus musculus synbindin mRNA, complete cds 40 6.4
50gb|AC129916.6| Homo sapiens chromosome 17, clone RP11-2L19, comp... 40 6.4
51gb|AC006433.18|AC006433 Homo sapiens, clone RP11-6A1, complete s... 40 6.4
52gb|AC157891.3| Medicago truncatula chromosome 7 BAC clone mte1-1... 40 6.4
53gb|AC147219.5| Mus musculus BAC clone RP23-37K18 from 18, comple... 40 6.4
54emb|BX465184.7| Zebrafish DNA sequence from clone DKEY-20N10 in ... 40 6.4
55emb|BX279523.5| Zebrafish DNA sequence from clone CH211-63O20 in... 40 6.4
56gb|AY104810.1| Zea mays PCO125164 mRNA sequence 40 6.4
57gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 6.4
58gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 6.4
59gb|DQ119472.1| Bagre marinus cytochrome b and tRNA-Thr genes, pa... 40 6.4 
>gb|AC108501.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1354_D07,
             complete sequence
          Length = 156163

 Score =  135 bits (68), Expect = 1e-28
 Identities = 131/152 (86%)
 Strand = Plus / Plus

                                                                         
Query: 211   gtggtcttggaggccctcctcaccagcacagcccagcacatgatcctgtacgccaggaag 270
             ||||||||||  |||||||| |||||||||||||||||||||| |||||||   | ||||
Sbjct: 72379 gtggtcttggctgccctcctgaccagcacagcccagcacatgaccctgtacaagacgaag 72438

                                                                         
Query: 271   aagcccatcatgacccccacattgacccacctcatgccctcgtccacccctctccccctc 330
             || || | ||||||||| ||||||||||||||||| |||||||| | |||||||||||||
Sbjct: 72439 aaccctagcatgaccccgacattgacccacctcatcccctcgtcgatccctctccccctc 72498

                                             
Query: 331   agcacgtcgcctccggtgctcaagcacacgcc 362
             ||||| || || ||  | ||||||||||||||
Sbjct: 72499 agcacatcaccccccttcctcaagcacacgcc 72530



 Score =  115 bits (58), Expect = 1e-22
 Identities = 76/82 (92%)
 Strand = Plus / Plus

                                                                         
Query: 390   ccacgccacgcacctgtccctggcgctgcccccgtactcgttgatgagcagcaggtccag 449
             |||||||||||||||| | |||  |||||| |||||||||||||| ||||||||||||||
Sbjct: 72537 ccacgccacgcacctgccgctgctgctgccgccgtactcgttgatcagcagcaggtccag 72596

                                   
Query: 450   cgggtacctgtacatggacacg 471
             ||||||||||||||||||||||
Sbjct: 72597 cgggtacctgtacatggacacg 72618
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  135 bits (68), Expect = 1e-28
 Identities = 131/152 (86%)
 Strand = Plus / Plus

                                                                            
Query: 211      gtggtcttggaggccctcctcaccagcacagcccagcacatgatcctgtacgccaggaag 270
                ||||||||||  |||||||| |||||||||||||||||||||| |||||||   | ||||
Sbjct: 18432542 gtggtcttggctgccctcctgaccagcacagcccagcacatgaccctgtacaagacgaag 18432601

                                                                            
Query: 271      aagcccatcatgacccccacattgacccacctcatgccctcgtccacccctctccccctc 330
                || || | ||||||||| ||||||||||||||||| |||||||| | |||||||||||||
Sbjct: 18432602 aaccctagcatgaccccgacattgacccacctcatcccctcgtcgatccctctccccctc 18432661

                                                
Query: 331      agcacgtcgcctccggtgctcaagcacacgcc 362
                ||||| || || ||  | ||||||||||||||
Sbjct: 18432662 agcacatcaccccccttcctcaagcacacgcc 18432693



 Score =  115 bits (58), Expect = 1e-22
 Identities = 76/82 (92%)
 Strand = Plus / Plus

                                                                            
Query: 390      ccacgccacgcacctgtccctggcgctgcccccgtactcgttgatgagcagcaggtccag 449
                |||||||||||||||| | |||  |||||| |||||||||||||| ||||||||||||||
Sbjct: 18432700 ccacgccacgcacctgccgctgctgctgccgccgtactcgttgatcagcagcaggtccag 18432759

                                      
Query: 450      cgggtacctgtacatggacacg 471
                ||||||||||||||||||||||
Sbjct: 18432760 cgggtacctgtacatggacacg 18432781
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>dbj|AK120526.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013127B22, full
            insert sequence
          Length = 2156

 Score =  135 bits (68), Expect = 1e-28
 Identities = 131/152 (86%)
 Strand = Plus / Minus

                                                                        
Query: 211  gtggtcttggaggccctcctcaccagcacagcccagcacatgatcctgtacgccaggaag 270
            ||||||||||  |||||||| |||||||||||||||||||||| |||||||   | ||||
Sbjct: 2044 gtggtcttggctgccctcctgaccagcacagcccagcacatgaccctgtacaagacgaag 1985

                                                                        
Query: 271  aagcccatcatgacccccacattgacccacctcatgccctcgtccacccctctccccctc 330
            || || | ||||||||| ||||||||||||||||| |||||||| | |||||||||||||
Sbjct: 1984 aaccctagcatgaccccgacattgacccacctcatcccctcgtcgatccctctccccctc 1925

                                            
Query: 331  agcacgtcgcctccggtgctcaagcacacgcc 362
            ||||| || || ||  | ||||||||||||||
Sbjct: 1924 agcacatcaccccccttcctcaagcacacgcc 1893



 Score =  115 bits (58), Expect = 1e-22
 Identities = 76/82 (92%)
 Strand = Plus / Minus

                                                                        
Query: 390  ccacgccacgcacctgtccctggcgctgcccccgtactcgttgatgagcagcaggtccag 449
            |||||||||||||||| | |||  |||||| |||||||||||||| ||||||||||||||
Sbjct: 1886 ccacgccacgcacctgccgctgctgctgccgccgtactcgttgatcagcagcaggtccag 1827

                                  
Query: 450  cgggtacctgtacatggacacg 471
            ||||||||||||||||||||||
Sbjct: 1826 cgggtacctgtacatggacacg 1805
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>dbj|AK107169.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-F12, full
            insert sequence
          Length = 2424

 Score =  135 bits (68), Expect = 1e-28
 Identities = 131/152 (86%)
 Strand = Plus / Minus

                                                                        
Query: 211  gtggtcttggaggccctcctcaccagcacagcccagcacatgatcctgtacgccaggaag 270
            ||||||||||  |||||||| |||||||||||||||||||||| |||||||   | ||||
Sbjct: 2214 gtggtcttggctgccctcctgaccagcacagcccagcacatgaccctgtacaagacgaag 2155

                                                                        
Query: 271  aagcccatcatgacccccacattgacccacctcatgccctcgtccacccctctccccctc 330
            || || | ||||||||| ||||||||||||||||| |||||||| | |||||||||||||
Sbjct: 2154 aaccctagcatgaccccgacattgacccacctcatcccctcgtcgatccctctccccctc 2095

                                            
Query: 331  agcacgtcgcctccggtgctcaagcacacgcc 362
            ||||| || || ||  | ||||||||||||||
Sbjct: 2094 agcacatcaccccccttcctcaagcacacgcc 2063



 Score =  115 bits (58), Expect = 1e-22
 Identities = 76/82 (92%)
 Strand = Plus / Minus

                                                                        
Query: 390  ccacgccacgcacctgtccctggcgctgcccccgtactcgttgatgagcagcaggtccag 449
            |||||||||||||||| | |||  |||||| |||||||||||||| ||||||||||||||
Sbjct: 2056 ccacgccacgcacctgccgctgctgctgccgccgtactcgttgatcagcagcaggtccag 1997

                                  
Query: 450  cgggtacctgtacatggacacg 471
            ||||||||||||||||||||||
Sbjct: 1996 cgggtacctgtacatggacacg 1975
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>dbj|AK111176.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-F03, full
            insert sequence
          Length = 2733

 Score =  115 bits (58), Expect = 1e-22
 Identities = 76/82 (92%)
 Strand = Plus / Minus

                                                                        
Query: 390  ccacgccacgcacctgtccctggcgctgcccccgtactcgttgatgagcagcaggtccag 449
            |||||||||||||||| | |||  |||||| |||||||||||||| ||||||||||||||
Sbjct: 1921 ccacgccacgcacctgccgctgctgctgccgccgtactcgttgatcagcagcaggtccag 1862

                                  
Query: 450  cgggtacctgtacatggacacg 471
            ||||||||||||||||||||||
Sbjct: 1861 cgggtacctgtacatggacacg 1840



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 301  ctcatgccctcgtccacccctctccccctcagcacgtcgcctccggtgctcaagcacacg 360
            ||||| |||||||| | |||||||||||||||||| || || ||  | ||||||||||||
Sbjct: 1989 ctcatcccctcgtcgatccctctccccctcagcacatcaccccccttcctcaagcacacg 1930

              
Query: 361  cc 362
            ||
Sbjct: 1929 cc 1928
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 362     cgttgccgttcatggcgtcccctc 385
               ||||||||||||||||||||||||
Sbjct: 2423010 cgttgccgttcatggcgtcccctc 2423033
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>gb|AC100491.9| Mus musculus chromosome 9, clone RP23-142M14, complete sequence
          Length = 222845

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 89    tcttaagaaatagcaaactacag 111
             |||||||||||||||||||||||
Sbjct: 44277 tcttaagaaatagcaaactacag 44299
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 346    gtgctcaagcacacgccgttg 366
              |||||||||||||||||||||
Sbjct: 557245 gtgctcaagcacacgccgttg 557225
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>ref|NM_021789.2| Mus musculus trafficking protein particle complex 4 (Trappc4), mRNA
          Length = 1196

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 436 agcagcaggtccagcgggta 455
           ||||||||||||||||||||
Sbjct: 366 agcagcaggtccagcgggta 347
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>gb|BT018856.1| Zea mays clone EL01N0556E05.d mRNA sequence
          Length = 2119

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 319  cctctccccctcagcacgtc 338
            ||||||||||||||||||||
Sbjct: 1963 cctctccccctcagcacgtc 1944
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>gb|BC038898.1| Mus musculus trafficking protein particle complex 4, mRNA (cDNA
           clone MGC:49061 IMAGE:5401311), complete cds
          Length = 1196

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 436 agcagcaggtccagcgggta 455
           ||||||||||||||||||||
Sbjct: 366 agcagcaggtccagcgggta 347
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>gb|AF426907.1| Anolis terraealtae isolate marm-Sts cytochrome b gene, partial cds;
           mitochondrial gene for mitochondrial product
          Length = 517

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  ttgcattccacttcttactc 82
           ||||||||||||||||||||
Sbjct: 440 ttgcattccacttcttactc 459
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>gb|AC140884.2| Homo sapiens chromosome 16 clone RP11-1353K19, complete sequence
          Length = 203870

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    agcaaactacagcagaaaat 119
              ||||||||||||||||||||
Sbjct: 201150 agcaaactacagcagaaaat 201169
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>gb|AC145889.4| Pan troglodytes BAC clone RP43-8B7 from 7, complete sequence
          Length = 174930

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    agcaaactacagcagaaaat 119
              ||||||||||||||||||||
Sbjct: 101530 agcaaactacagcagaaaat 101511
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>gb|AF231654.1| Strongylura timucu clone STRI-4308 cytochrome b oxidase (Cytb)
           gene, partial cds; mitochondrial gene for mitochondrial
           product
          Length = 800

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  ttgcattccacttcttactc 82
           ||||||||||||||||||||
Sbjct: 536 ttgcattccacttcttactc 555
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>gb|AF231653.1| Strongylura senegalensis cytochrome b oxidase (Cytb) gene, partial
           cds; mitochondrial gene for mitochondrial product
          Length = 800

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  ttgcattccacttcttactc 82
           ||||||||||||||||||||
Sbjct: 536 ttgcattccacttcttactc 555
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>gb|AY334395.1| Camponotus americanus isolate Camer00 cytochrome oxidase subunit I
            (COI) gene, partial cds; tRNA-Leu gene, complete
            sequence; cytochrome oxidase subunit II (COII) gene,
            partial cds; tRNA-Lys and tRNA-Asx genes, complete
            sequence; ATP synthase F0 subunit 8 (ATP8) and ATP
            synthase F0 subunit 6 (ATP6) genes, complete cds; and
            cytochrome oxidase subunit III (COIII) gene, partial cds;
            mitochondrial
          Length = 3681

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 108  acagcagaaaatcaaataaataag 131
            |||| |||||||||||||||||||
Sbjct: 1550 acagaagaaaatcaaataaataag 1573
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>gb|AY334385.1| Camponotus sayi isolate Csayi13 cytochrome oxidase subunit I (COI)
            gene, partial cds; tRNA-Leu gene, complete sequence;
            cytochrome oxidase subunit II (COII) gene, partial cds;
            tRNA-Lys and tRNA-Asx genes, complete sequence; ATP
            synthase F0 subunit 8 (ATP8) and ATP synthase F0 subunit
            6 (ATP6) genes, complete cds; and cytochrome oxidase
            subunit III (COIII) gene, partial cds; mitochondrial
          Length = 3686

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 108  acagcagaaaatcaaataaataag 131
            |||| |||||||||||||||||||
Sbjct: 1538 acagaagaaaatcaaataaataag 1561
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>gb|AY327320.1| Noturus stigmosus specimen-voucher INHS88906 cytochrome b (cytb)
           gene, partial cds; mitochondrial gene for mitochondrial
           product
          Length = 1138

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  ttgcattccacttcttactc 82
           ||||||||||||||||||||
Sbjct: 533 ttgcattccacttcttactc 552
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>gb|AY327319.1| Noturus stigmosus specimen-voucher INHS45557 cytochrome b (cytb)
           gene, partial cds; mitochondrial gene for mitochondrial
           product
          Length = 1138

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  ttgcattccacttcttactc 82
           ||||||||||||||||||||
Sbjct: 533 ttgcattccacttcttactc 552
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>gb|AY327318.1| Noturus placidus isolate B specimen-voucher INHS96383 cytochrome b
           (cytb) gene, partial cds; mitochondrial gene for
           mitochondrial product
          Length = 1138

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  ttgcattccacttcttactc 82
           ||||||||||||||||||||
Sbjct: 533 ttgcattccacttcttactc 552
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>gb|AY327317.1| Noturus placidus isolate A specimen-voucher INHS96383 cytochrome b
           (cytb) gene, partial cds; mitochondrial gene for
           mitochondrial product
          Length = 1129

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  ttgcattccacttcttactc 82
           ||||||||||||||||||||
Sbjct: 524 ttgcattccacttcttactc 543
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>gb|AY327310.1| Noturus munitus isolate B specimen-voucher UAIC11701.01 cytochrome
           b (cytb) gene, partial cds; mitochondrial gene for
           mitochondrial product
          Length = 1138

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  ttgcattccacttcttactc 82
           ||||||||||||||||||||
Sbjct: 533 ttgcattccacttcttactc 552
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>gb|AY327309.1| Noturus munitus isolate A specimen-voucher UAIC11701.01 cytochrome
           b (cytb) gene, partial cds; mitochondrial gene for
           mitochondrial product
          Length = 1138

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  ttgcattccacttcttactc 82
           ||||||||||||||||||||
Sbjct: 533 ttgcattccacttcttactc 552
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>gb|AY327283.1| Noturus flavater specimen-voucher UAIC11868.02 cytochrome b (cytb)
           gene, partial cds; mitochondrial gene for mitochondrial
           product
          Length = 1138

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  ttgcattccacttcttactc 82
           ||||||||||||||||||||
Sbjct: 533 ttgcattccacttcttactc 552
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>gb|AC142381.2| Homo sapiens chromosome 16 clone RP11-1166P10, complete sequence
          Length = 211171

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   agcaaactacagcagaaaat 119
             ||||||||||||||||||||
Sbjct: 80918 agcaaactacagcagaaaat 80899
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>gb|AC142086.3| Homo sapiens chromosome 16 clone RP11-989E6, complete sequence
          Length = 177574

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    agcaaactacagcagaaaat 119
              ||||||||||||||||||||
Sbjct: 101952 agcaaactacagcagaaaat 101933
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>gb|AC122428.4| Mus musculus BAC clone RP24-175C20 from chromosome 9, complete sequence
          Length = 185902

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 436   agcagcaggtccagcgggta 455
             ||||||||||||||||||||
Sbjct: 77592 agcagcaggtccagcgggta 77573
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>gb|AC115119.5| Mus musculus BAC clone RP23-87M19 from 18, complete sequence
          Length = 174491

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 121  aaataaataaggccgattgtgtat 144
            |||||||||||||||||| |||||
Sbjct: 9108 aaataaataaggccgattttgtat 9085
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>gb|AC163161.4| Mus musculus BAC clone RP23-103A23 from chromosome 6, complete sequence
          Length = 224416

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      gttgacatttgtttttcatg 25
              ||||||||||||||||||||
Sbjct: 139520 gttgacatttgtttttcatg 139539
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>gb|BC025433.1| Mus musculus cDNA clone IMAGE:5006134, **** WARNING: chimeric clone
           ****
          Length = 1060

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 436 agcagcaggtccagcgggta 455
           ||||||||||||||||||||
Sbjct: 48  agcagcaggtccagcgggta 67
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>emb|Z84468.1|HS299D3 Human DNA sequence from clone CTA-299D3 on chromosome 22q13.3, complete
             sequence
          Length = 90736

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    tttgtttttcatgaatccaa 32
             ||||||||||||||||||||
Sbjct: 23838 tttgtttttcatgaatccaa 23819
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>gb|AC115090.8| Homo sapiens chromosome 17, clone CTC-861O14, complete sequence
          Length = 173716

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   agcaaactacagcagaaaat 119
             ||||||||||||||||||||
Sbjct: 71901 agcaaactacagcagaaaat 71920
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>gb|AC159300.3| Mus musculus BAC clone RP23-242D23 from chromosome 6, complete sequence
          Length = 200738

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      gttgacatttgtttttcatg 25
              ||||||||||||||||||||
Sbjct: 178235 gttgacatttgtttttcatg 178216
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>emb|AL606998.3|OSJN00125 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000223_09,
             complete sequence
          Length = 120583

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    tttgtttttcatgaatccaa 32
             ||||||||||||||||||||
Sbjct: 20191 tttgtttttcatgaatccaa 20172
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>emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081L15,
             complete sequence
          Length = 150864

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    tttgtttttcatgaatccaa 32
             ||||||||||||||||||||
Sbjct: 87004 tttgtttttcatgaatccaa 86985
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>gb|AF186101.1| Strongylura senegalensis isolate 39b cytochrome b gene, partial
           cds; mitochondrial gene for mitochondrial product
          Length = 662

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  ttgcattccacttcttactc 82
           ||||||||||||||||||||
Sbjct: 421 ttgcattccacttcttactc 440
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>gb|AF186100.1| Strongylura senegalensis isolate 39a cytochrome b gene, partial
           cds; mitochondrial gene for mitochondrial product
          Length = 662

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  ttgcattccacttcttactc 82
           ||||||||||||||||||||
Sbjct: 421 ttgcattccacttcttactc 440
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>gb|AF186098.1| Strongylura timucu isolate 4a cytochrome b gene, partial cds;
           mitochondrial gene for mitochondrial product
          Length = 659

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  ttgcattccacttcttactc 82
           ||||||||||||||||||||
Sbjct: 431 ttgcattccacttcttactc 450
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>gb|AF243913.1| Strongylura senegalensis isolate N39b cytochrome b (cytb) gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 541

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  ttgcattccacttcttactc 82
           ||||||||||||||||||||
Sbjct: 413 ttgcattccacttcttactc 432
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>gb|AF243912.1| Strongylura senegalensis isolate N39a cytochrome b (cytb) gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 541

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  ttgcattccacttcttactc 82
           ||||||||||||||||||||
Sbjct: 413 ttgcattccacttcttactc 432
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>gb|AF243862.1| Strongylura timucu isolate N4a cytochrome b (cytb) gene, partial
           cds; mitochondrial gene for mitochondrial product
          Length = 541

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  ttgcattccacttcttactc 82
           ||||||||||||||||||||
Sbjct: 413 ttgcattccacttcttactc 432
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>dbj|AK032168.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
           enriched library, clone:6430407A15 product:synbindin,
           full insert sequence
          Length = 932

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 436 agcagcaggtccagcgggta 455
           ||||||||||||||||||||
Sbjct: 132 agcagcaggtccagcgggta 113
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>dbj|AK005276.1| Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched
           library, clone:1500017G03 product:synbindin, full insert
           sequence
          Length = 1186

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 436 agcagcaggtccagcgggta 455
           ||||||||||||||||||||
Sbjct: 151 agcagcaggtccagcgggta 132
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>dbj|AK053710.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
           library, clone:E130220E24 product:synbindin, full insert
           sequence
          Length = 1340

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 436 agcagcaggtccagcgggta 455
           ||||||||||||||||||||
Sbjct: 181 agcagcaggtccagcgggta 162
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 13       tttgtttttcatgaatccaa 32
                ||||||||||||||||||||
Sbjct: 24197779 tttgtttttcatgaatccaa 24197760
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>gb|AC092144.4| Homo sapiens chromosome 16 clone RP11-572L10, complete sequence
          Length = 186711

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   agcaaactacagcagaaaat 119
             ||||||||||||||||||||
Sbjct: 68204 agcaaactacagcagaaaat 68223
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>gb|AC138801.2| Homo sapiens chromosome 16 clone CTD-3129O20, complete sequence
          Length = 150183

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   agcaaactacagcagaaaat 119
             ||||||||||||||||||||
Sbjct: 76602 agcaaactacagcagaaaat 76583
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>gb|AF233340.1|AF233340 Mus musculus synbindin mRNA, complete cds
          Length = 1123

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 436 agcagcaggtccagcgggta 455
           ||||||||||||||||||||
Sbjct: 323 agcagcaggtccagcgggta 304
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>gb|AC129916.6| Homo sapiens chromosome 17, clone RP11-2L19, complete sequence
          Length = 167265

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    agcaaactacagcagaaaat 119
              ||||||||||||||||||||
Sbjct: 117703 agcaaactacagcagaaaat 117722
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>gb|AC006433.18|AC006433 Homo sapiens, clone RP11-6A1, complete sequence
          Length = 179563

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    ccagcacagcccagcacatg 252
              ||||||||||||||||||||
Sbjct: 169887 ccagcacagcccagcacatg 169906
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>gb|AC157891.3| Medicago truncatula chromosome 7 BAC clone mte1-1i2, complete
           sequence
          Length = 154095

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 38  gcattttgcacacatgagtgcaaa 61
           ||||||||||||||| ||||||||
Sbjct: 393 gcattttgcacacataagtgcaaa 370
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>gb|AC147219.5| Mus musculus BAC clone RP23-37K18 from 18, complete sequence
          Length = 183177

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 121   aaataaataaggccgattgtgtat 144
             |||||||||||||||||| |||||
Sbjct: 34842 aaataaataaggccgattttgtat 34865
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>emb|BX465184.7| Zebrafish DNA sequence from clone DKEY-20N10 in linkage group 20,
              complete sequence
          Length = 139351

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 107    tacagcagaaaatcaaataaataa 130
              ||||||||||||| ||||||||||
Sbjct: 139224 tacagcagaaaattaaataaataa 139201
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>emb|BX279523.5| Zebrafish DNA sequence from clone CH211-63O20 in linkage group 20,
            complete sequence
          Length = 165073

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 107  tacagcagaaaatcaaataaataa 130
            ||||||||||||| ||||||||||
Sbjct: 1873 tacagcagaaaattaaataaataa 1850
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>gb|AY104810.1| Zea mays PCO125164 mRNA sequence
          Length = 1091

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 319 cctctccccctcagcacgtc 338
           ||||||||||||||||||||
Sbjct: 736 cctctccccctcagcacgtc 717
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 354     gcacacgccgttgccgttca 373
               ||||||||||||||||||||
Sbjct: 1919923 gcacacgccgttgccgttca 1919904
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 113     agaaaatcaaataaataagg 132
               ||||||||||||||||||||
Sbjct: 3646007 agaaaatcaaataaataagg 3646026
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>gb|DQ119472.1| Bagre marinus cytochrome b and tRNA-Thr genes, partial sequence;
           mitochondrial
          Length = 1128

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  ttgcattccacttcttactc 82
           ||||||||||||||||||||
Sbjct: 501 ttgcattccacttcttactc 520


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,880,099
Number of Sequences: 3902068
Number of extensions: 5880099
Number of successful extensions: 149732
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 149465
Number of HSP's gapped (non-prelim): 267
length of query: 471
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 449
effective length of database: 17,147,199,772
effective search space: 7699092697628
effective search space used: 7699092697628
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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