Clone Name | rbart25h10 |
---|---|
Clone Library Name | barley_pub |
>gb|AF161718.1|AF161718 Triticum aestivum Sec61p (sec61) mRNA, complete cds Length = 1630 Score = 446 bits (225), Expect = e-122 Identities = 332/366 (90%), Gaps = 10/366 (2%) Strand = Plus / Minus Query: 127 ctacagatttctcaactgtaaataagtcgggc-aacctaaacagaatttaatctccggtt 185 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1588 ctacagatttctcaactgtaaataagtcggggtaacctaaacagaatttaatctccggtt 1529 Query: 186 acaaccaaaaca----gccagccaagcagtactgtgacagtctagaaagact-----tga 236 ||||||| |||| ||||||||||||||| || ||| ||||| ||||||| || Sbjct: 1528 acaaccacaacagccagccagccaagcagtattgcgactgtctaaaaagactcgagctgg 1469 Query: 237 gctgtagccataacatgctcccaaagctatcatgtatcaatcagaacccaaagaaaccaa 296 ||||||||||||||||||||||||||||||||||| ||||||| ||||| || ||||||| Sbjct: 1468 gctgtagccataacatgctcccaaagctatcatgtttcaatcaaaacccgaaaaaaccaa 1409 Query: 297 gctcggtcgccctctccttctcgaaggtctcaaagtactggtatatgatggtaacagcca 356 |||| || ||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct: 1408 gctctgttgccctctccttctcgaaggtctcaaagtactggtatatgatggaatcagcca 1349 Query: 357 acagaataccggttcctgaaccaattgcgcccatgaaatcagccagaacagtcaatgcac 416 ||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct: 1348 acaaaattccggttcctgaaccaattgcgcccatgaaatcagcaagaacagtcaatgcgc 1289 Query: 417 cgatgcatactccaccaaatgcagcagcagtagggatgtatctgttcagttccttctgca 476 ||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| |||| Sbjct: 1288 cgatgcacactccaccaaatgcagcggcagtagggatgtatttgttcagttccttttgca 1229 Query: 477 agtttg 482 ||||| Sbjct: 1228 ggtttg 1223
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 276 bits (139), Expect = 6e-71 Identities = 184/199 (92%) Strand = Plus / Plus Query: 284 ccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtactggtatatg 343 |||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| ||| Sbjct: 10862983 ccaaagaaaccaagctcggttgccctctctttctcgaatgtctcgaagtactggtaaatg 10863042 Query: 344 atggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaatcagccaga 403 ||||||||||| | ||||||||| |||||||||||||| || |||||||||||||| ||| Sbjct: 10863043 atggtaacagcaagcagaataccagttcctgaaccaatcgcacccatgaaatcagctaga 10863102 Query: 404 acagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatgtatctgttc 463 |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct: 10863103 acagtcaatgcaccaatgcacactccaccaaatgcagcagcagtggggatgtatctgttc 10863162 Query: 464 agttccttctgcaagtttg 482 | ||||||||||||||||| Sbjct: 10863163 aattccttctgcaagtttg 10863181 Score = 252 bits (127), Expect = 9e-64 Identities = 181/199 (90%) Strand = Plus / Plus Query: 284 ccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtactggtatatg 343 ||||||||||||||||| || |||||||| |||||||| ||||| ||||||||||| ||| Sbjct: 10853368 ccaaagaaaccaagctcagttgccctctctttctcgaatgtctcgaagtactggtagatg 10853427 Query: 344 atggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaatcagccaga 403 || |||||||| | ||||||||| |||||||||||||| || |||||||||||||| ||| Sbjct: 10853428 atagtaacagcaagcagaataccagttcctgaaccaatagcacccatgaaatcagctaga 10853487 Query: 404 acagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatgtatctgttc 463 |||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||| Sbjct: 10853488 acagtcaatgcaccaatgcacactccaccaaatgcagcggcagtggggatgtatctgttc 10853547 Query: 464 agttccttctgcaagtttg 482 | ||||||||||||||||| Sbjct: 10853548 aattccttctgcaagtttg 10853566 Score = 180 bits (91), Expect = 3e-42 Identities = 175/202 (86%), Gaps = 7/202 (3%) Strand = Plus / Plus Query: 284 ccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtac---tggtat 340 |||||||||||||||| || |||||||| ||||| ||||| |||||| ||||| Sbjct: 10874491 ccaaagaaaccaagcttagttgccctctc----tcgaatgtctcgaagtacagctggtag 10874546 Query: 341 atgatggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaatcagcc 400 |||||||||||||| | |||||| || |||||||||||||| || |||||||||||||| Sbjct: 10874547 atgatggtaacagcaagcagaatgccagttcctgaaccaatcgcacccatgaaatcagct 10874606 Query: 401 agaacagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatgtatctg 460 ||||||||||||||||| ||||| ||||||||||||||||| ||||| | ||||| |||| Sbjct: 10874607 agaacagtcaatgcaccaatgcacactccaccaaatgcagcggcagtggagatgtgtctg 10874666 Query: 461 ttcagttccttctgcaagtttg 482 |||| ||||||||||||||||| Sbjct: 10874667 ttcaattccttctgcaagtttg 10874688 Score = 50.1 bits (25), Expect = 0.007 Identities = 62/72 (86%), Gaps = 3/72 (4%) Strand = Plus / Plus Query: 146 aaataagtcgggcaacctaaacagaatttaa--tctccggttacaacca-aaacagccag 202 |||||||||||||||||||||| || ||||| ||||| ||||| ||| |||||||| | Sbjct: 10862850 aaataagtcgggcaacctaaactgactttaagctctccaattacatccataaacagccgg 10862909 Query: 203 ccaagcagtact 214 ||||| |||||| Sbjct: 10862910 ccaagaagtact 10862921
>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0512H04 Length = 151049 Score = 276 bits (139), Expect = 6e-71 Identities = 184/199 (92%) Strand = Plus / Plus Query: 284 ccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtactggtatatg 343 |||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| ||| Sbjct: 86706 ccaaagaaaccaagctcggttgccctctctttctcgaatgtctcgaagtactggtaaatg 86765 Query: 344 atggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaatcagccaga 403 ||||||||||| | ||||||||| |||||||||||||| || |||||||||||||| ||| Sbjct: 86766 atggtaacagcaagcagaataccagttcctgaaccaatcgcacccatgaaatcagctaga 86825 Query: 404 acagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatgtatctgttc 463 |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct: 86826 acagtcaatgcaccaatgcacactccaccaaatgcagcagcagtggggatgtatctgttc 86885 Query: 464 agttccttctgcaagtttg 482 | ||||||||||||||||| Sbjct: 86886 aattccttctgcaagtttg 86904 Score = 252 bits (127), Expect = 9e-64 Identities = 181/199 (90%) Strand = Plus / Plus Query: 284 ccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtactggtatatg 343 ||||||||||||||||| || |||||||| |||||||| ||||| ||||||||||| ||| Sbjct: 77091 ccaaagaaaccaagctcagttgccctctctttctcgaatgtctcgaagtactggtagatg 77150 Query: 344 atggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaatcagccaga 403 || |||||||| | ||||||||| |||||||||||||| || |||||||||||||| ||| Sbjct: 77151 atagtaacagcaagcagaataccagttcctgaaccaatagcacccatgaaatcagctaga 77210 Query: 404 acagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatgtatctgttc 463 |||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||| Sbjct: 77211 acagtcaatgcaccaatgcacactccaccaaatgcagcggcagtggggatgtatctgttc 77270 Query: 464 agttccttctgcaagtttg 482 | ||||||||||||||||| Sbjct: 77271 aattccttctgcaagtttg 77289 Score = 180 bits (91), Expect = 3e-42 Identities = 175/202 (86%), Gaps = 7/202 (3%) Strand = Plus / Plus Query: 284 ccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtac---tggtat 340 |||||||||||||||| || |||||||| ||||| ||||| |||||| ||||| Sbjct: 98214 ccaaagaaaccaagcttagttgccctctc----tcgaatgtctcgaagtacagctggtag 98269 Query: 341 atgatggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaatcagcc 400 |||||||||||||| | |||||| || |||||||||||||| || |||||||||||||| Sbjct: 98270 atgatggtaacagcaagcagaatgccagttcctgaaccaatcgcacccatgaaatcagct 98329 Query: 401 agaacagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatgtatctg 460 ||||||||||||||||| ||||| ||||||||||||||||| ||||| | ||||| |||| Sbjct: 98330 agaacagtcaatgcaccaatgcacactccaccaaatgcagcggcagtggagatgtgtctg 98389 Query: 461 ttcagttccttctgcaagtttg 482 |||| ||||||||||||||||| Sbjct: 98390 ttcaattccttctgcaagtttg 98411 Score = 50.1 bits (25), Expect = 0.007 Identities = 62/72 (86%), Gaps = 3/72 (4%) Strand = Plus / Plus Query: 146 aaataagtcgggcaacctaaacagaatttaa--tctccggttacaacca-aaacagccag 202 |||||||||||||||||||||| || ||||| ||||| ||||| ||| |||||||| | Sbjct: 86573 aaataagtcgggcaacctaaactgactttaagctctccaattacatccataaacagccgg 86632 Query: 203 ccaagcagtact 214 ||||| |||||| Sbjct: 86633 ccaagaagtact 86644
>dbj|AP005400.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0698G06 Length = 138282 Score = 276 bits (139), Expect = 6e-71 Identities = 184/199 (92%) Strand = Plus / Plus Query: 284 ccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtactggtatatg 343 |||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| ||| Sbjct: 2688 ccaaagaaaccaagctcggttgccctctctttctcgaatgtctcgaagtactggtaaatg 2747 Query: 344 atggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaatcagccaga 403 ||||||||||| | ||||||||| |||||||||||||| || |||||||||||||| ||| Sbjct: 2748 atggtaacagcaagcagaataccagttcctgaaccaatcgcacccatgaaatcagctaga 2807 Query: 404 acagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatgtatctgttc 463 |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct: 2808 acagtcaatgcaccaatgcacactccaccaaatgcagcagcagtggggatgtatctgttc 2867 Query: 464 agttccttctgcaagtttg 482 | ||||||||||||||||| Sbjct: 2868 aattccttctgcaagtttg 2886 Score = 180 bits (91), Expect = 3e-42 Identities = 175/202 (86%), Gaps = 7/202 (3%) Strand = Plus / Plus Query: 284 ccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtac---tggtat 340 |||||||||||||||| || |||||||| ||||| ||||| |||||| ||||| Sbjct: 14196 ccaaagaaaccaagcttagttgccctctc----tcgaatgtctcgaagtacagctggtag 14251 Query: 341 atgatggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaatcagcc 400 |||||||||||||| | |||||| || |||||||||||||| || |||||||||||||| Sbjct: 14252 atgatggtaacagcaagcagaatgccagttcctgaaccaatcgcacccatgaaatcagct 14311 Query: 401 agaacagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatgtatctg 460 ||||||||||||||||| ||||| ||||||||||||||||| ||||| | ||||| |||| Sbjct: 14312 agaacagtcaatgcaccaatgcacactccaccaaatgcagcggcagtggagatgtgtctg 14371 Query: 461 ttcagttccttctgcaagtttg 482 |||| ||||||||||||||||| Sbjct: 14372 ttcaattccttctgcaagtttg 14393 Score = 50.1 bits (25), Expect = 0.007 Identities = 62/72 (86%), Gaps = 3/72 (4%) Strand = Plus / Plus Query: 146 aaataagtcgggcaacctaaacagaatttaa--tctccggttacaacca-aaacagccag 202 |||||||||||||||||||||| || ||||| ||||| ||||| ||| |||||||| | Sbjct: 2555 aaataagtcgggcaacctaaactgactttaagctctccaattacatccataaacagccgg 2614 Query: 203 ccaagcagtact 214 ||||| |||||| Sbjct: 2615 ccaagaagtact 2626
>dbj|AK100597.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107A15, full insert sequence Length = 2132 Score = 276 bits (139), Expect = 6e-71 Identities = 184/199 (92%) Strand = Plus / Minus Query: 284 ccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtactggtatatg 343 |||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| ||| Sbjct: 1573 ccaaagaaaccaagctcggttgccctctctttctcgaatgtctcgaagtactggtaaatg 1514 Query: 344 atggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaatcagccaga 403 ||||||||||| | ||||||||| |||||||||||||| || |||||||||||||| ||| Sbjct: 1513 atggtaacagcaagcagaataccagttcctgaaccaatcgcacccatgaaatcagctaga 1454 Query: 404 acagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatgtatctgttc 463 |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct: 1453 acagtcaatgcaccaatgcacactccaccaaatgcagcagcagtggggatgtatctgttc 1394 Query: 464 agttccttctgcaagtttg 482 | ||||||||||||||||| Sbjct: 1393 aattccttctgcaagtttg 1375 Score = 50.1 bits (25), Expect = 0.007 Identities = 62/72 (86%), Gaps = 3/72 (4%) Strand = Plus / Minus Query: 146 aaataagtcgggcaacctaaacagaatttaa--tctccggttacaacca-aaacagccag 202 |||||||||||||||||||||| || ||||| ||||| ||||| ||| |||||||| | Sbjct: 1706 aaataagtcgggcaacctaaactgactttaagctctccaattacatccataaacagccgg 1647 Query: 203 ccaagcagtact 214 ||||| |||||| Sbjct: 1646 ccaagaagtact 1635
>gb|BT017902.1| Zea mays clone EL01N0516D06.c mRNA sequence Length = 1209 Score = 262 bits (132), Expect = 1e-66 Identities = 189/208 (90%) Strand = Plus / Minus Query: 275 aatcagaacccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtac 334 ||||| || ||||||||||||||||| || ||||| |||||||||||||| || ||||| Sbjct: 759 aatcaaaaaccaaagaaaccaagctccgttgccctttccttctcgaaggtttcgaagtat 700 Query: 335 tggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaa 394 ||||||||||| || ||||||| ||| || || ||||||||||||||||| ||||||||| Sbjct: 699 tggtatatgattgtcacagccagcagtattccagttcctgaaccaattgcacccatgaaa 640 Query: 395 tcagccagaacagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatg 454 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct: 639 tcagccaggacagtcaatgcgccgatgcatactccaccaaatgcagcagcagtggggatg 580 Query: 455 tatctgttcagttccttctgcaagtttg 482 |||| ||||||||||||||||||||||| Sbjct: 579 tatcggttcagttccttctgcaagtttg 552
>dbj|AK062048.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-A12, full insert sequence Length = 1375 Score = 252 bits (127), Expect = 9e-64 Identities = 181/199 (90%) Strand = Plus / Minus Query: 284 ccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtactggtatatg 343 ||||||||||||||||| || |||||||| |||||||| ||||| ||||||||||| ||| Sbjct: 1048 ccaaagaaaccaagctcagttgccctctctttctcgaatgtctcgaagtactggtagatg 989 Query: 344 atggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaatcagccaga 403 || |||||||| | ||||||||| |||||||||||||| || |||||||||||||| ||| Sbjct: 988 atagtaacagcaagcagaataccagttcctgaaccaatagcacccatgaaatcagctaga 929 Query: 404 acagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatgtatctgttc 463 |||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||| Sbjct: 928 acagtcaatgcaccaatgcacactccaccaaatgcagcggcagtggggatgtatctgttc 869 Query: 464 agttccttctgcaagtttg 482 | ||||||||||||||||| Sbjct: 868 aattccttctgcaagtttg 850
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 220 bits (111), Expect = 3e-54 Identities = 177/199 (88%) Strand = Plus / Minus Query: 276 atcagaacccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtact 335 |||| |||||||||||||| |||||||| ||||| || |||||||| |||||||| |||| Sbjct: 5867409 atcaaaacccaaagaaacctagctcggtagccctttctttctcgaatgtctcaaaatact 5867350 Query: 336 ggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaat 395 |||| ||||| |||||||| | ||| || || ||||||||||||||||| |||||||||| Sbjct: 5867349 ggtagatgattgtaacagcgagcagtatcccagttcctgaaccaattgcacccatgaaat 5867290 Query: 396 cagccagaacagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatgt 455 |||| || |||||||||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 5867289 cagctaggacagtcaatgcaccaatgcagactccaccaaatgcagcagctgtagggatgt 5867230 Query: 456 atctgttcagttccttctg 474 ||||||||| ||| ||||| Sbjct: 5867229 atctgttcaattctttctg 5867211
>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0021B21, from chromosome 3, complete sequence Length = 139208 Score = 220 bits (111), Expect = 3e-54 Identities = 177/199 (88%) Strand = Plus / Minus Query: 276 atcagaacccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtact 335 |||| |||||||||||||| |||||||| ||||| || |||||||| |||||||| |||| Sbjct: 96239 atcaaaacccaaagaaacctagctcggtagccctttctttctcgaatgtctcaaaatact 96180 Query: 336 ggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaat 395 |||| ||||| |||||||| | ||| || || ||||||||||||||||| |||||||||| Sbjct: 96179 ggtagatgattgtaacagcgagcagtatcccagttcctgaaccaattgcacccatgaaat 96120 Query: 396 cagccagaacagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatgt 455 |||| || |||||||||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 96119 cagctaggacagtcaatgcaccaatgcagactccaccaaatgcagcagctgtagggatgt 96060 Query: 456 atctgttcagttccttctg 474 ||||||||| ||| ||||| Sbjct: 96059 atctgttcaattctttctg 96041
>gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0085F02, complete sequence Length = 128535 Score = 220 bits (111), Expect = 3e-54 Identities = 177/199 (88%) Strand = Plus / Minus Query: 276 atcagaacccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtact 335 |||| |||||||||||||| |||||||| ||||| || |||||||| |||||||| |||| Sbjct: 17031 atcaaaacccaaagaaacctagctcggtagccctttctttctcgaatgtctcaaaatact 16972 Query: 336 ggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaat 395 |||| ||||| |||||||| | ||| || || ||||||||||||||||| |||||||||| Sbjct: 16971 ggtagatgattgtaacagcgagcagtatcccagttcctgaaccaattgcacccatgaaat 16912 Query: 396 cagccagaacagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatgt 455 |||| || |||||||||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 16911 cagctaggacagtcaatgcaccaatgcagactccaccaaatgcagcagctgtagggatgt 16852 Query: 456 atctgttcagttccttctg 474 ||||||||| ||| ||||| Sbjct: 16851 atctgttcaattctttctg 16833
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 220 bits (111), Expect = 3e-54 Identities = 177/199 (88%) Strand = Plus / Minus Query: 276 atcagaacccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtact 335 |||| |||||||||||||| |||||||| ||||| || |||||||| |||||||| |||| Sbjct: 5866622 atcaaaacccaaagaaacctagctcggtagccctttctttctcgaatgtctcaaaatact 5866563 Query: 336 ggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaat 395 |||| ||||| |||||||| | ||| || || ||||||||||||||||| |||||||||| Sbjct: 5866562 ggtagatgattgtaacagcgagcagtatcccagttcctgaaccaattgcacccatgaaat 5866503 Query: 396 cagccagaacagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatgt 455 |||| || |||||||||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 5866502 cagctaggacagtcaatgcaccaatgcagactccaccaaatgcagcagctgtagggatgt 5866443 Query: 456 atctgttcagttccttctg 474 ||||||||| ||| ||||| Sbjct: 5866442 atctgttcaattctttctg 5866424
>dbj|AK062070.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-E03, full insert sequence Length = 1621 Score = 220 bits (111), Expect = 3e-54 Identities = 177/199 (88%) Strand = Plus / Minus Query: 276 atcagaacccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtact 335 |||| |||||||||||||| |||||||| ||||| || |||||||| |||||||| |||| Sbjct: 1336 atcaaaacccaaagaaacctagctcggtagccctttctttctcgaatgtctcaaaatact 1277 Query: 336 ggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaat 395 |||| ||||| |||||||| | ||| || || ||||||||||||||||| |||||||||| Sbjct: 1276 ggtagatgattgtaacagcgagcagtatcccagttcctgaaccaattgcacccatgaaat 1217 Query: 396 cagccagaacagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatgt 455 |||| || |||||||||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 1216 cagctaggacagtcaatgcaccaatgcagactccaccaaatgcagcagctgtagggatgt 1157 Query: 456 atctgttcagttccttctg 474 ||||||||| ||| ||||| Sbjct: 1156 atctgttcaattctttctg 1138
>dbj|AK073633.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048G12, full insert sequence Length = 1970 Score = 212 bits (107), Expect = 8e-52 Identities = 176/199 (88%) Strand = Plus / Minus Query: 276 atcagaacccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtact 335 |||| |||||| ||||||| |||||||| ||||| || |||||||| |||||||| |||| Sbjct: 1576 atcaaaacccagagaaacctagctcggtagccctttctttctcgaatgtctcaaaatact 1517 Query: 336 ggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaat 395 |||| ||||| |||||||| | ||| || || ||||||||||||||||| |||||||||| Sbjct: 1516 ggtagatgattgtaacagcgagcagtatcccagttcctgaaccaattgcacccatgaaat 1457 Query: 396 cagccagaacagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatgt 455 |||| || |||||||||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 1456 cagctaggacagtcaatgcaccaatgcagactccaccaaatgcagcagctgtagggatgt 1397 Query: 456 atctgttcagttccttctg 474 ||||||||| ||| ||||| Sbjct: 1396 atctgttcaattctttctg 1378
>gb|BT016615.1| Zea mays clone Contig448 mRNA sequence Length = 1755 Score = 210 bits (106), Expect = 3e-51 Identities = 181/206 (87%) Strand = Plus / Minus Query: 275 aatcagaacccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtac 334 ||||| || ||||||||||||||||| |||||||| |||||||| ||||| || ||||| Sbjct: 1531 aatcaaaaaccaaagaaaccaagctcagtcgccctttccttctcaaaggtttcgaagtat 1472 Query: 335 tggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaa 394 ||||||||||| || ||||| | || ||||| |||||||||||||| || ||||||||| Sbjct: 1471 tggtatatgattgtcacagcgagcaatataccagttcctgaaccaatcgcacccatgaaa 1412 Query: 395 tcagccagaacagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatg 454 |||||||| || |||||||| || |||||||| |||||||||||||||||||| |||||| Sbjct: 1411 tcagccaggacggtcaatgcgccaatgcatacaccaccaaatgcagcagcagtggggatg 1352 Query: 455 tatctgttcagttccttctgcaagtt 480 |||| ||| ||||||||||||||||| Sbjct: 1351 tatcggttaagttccttctgcaagtt 1326
>gb|BT024137.1| Zea mays clone EL01N0446B05 mRNA sequence Length = 1756 Score = 210 bits (106), Expect = 3e-51 Identities = 181/206 (87%) Strand = Plus / Minus Query: 275 aatcagaacccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtac 334 ||||| || ||||||||||||||||| |||||||| |||||||| ||||| || ||||| Sbjct: 1508 aatcaaaaaccaaagaaaccaagctcagtcgccctttccttctcaaaggtttcgaagtat 1449 Query: 335 tggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaa 394 ||||||||||| || ||||| | || ||||| |||||||||||||| || ||||||||| Sbjct: 1448 tggtatatgattgtcacagcgagcaatataccagttcctgaaccaatcgcacccatgaaa 1389 Query: 395 tcagccagaacagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatg 454 |||||||| || |||||||| || |||||||| |||||||||||||||||||| |||||| Sbjct: 1388 tcagccaggacggtcaatgcgccaatgcatacaccaccaaatgcagcagcagtggggatg 1329 Query: 455 tatctgttcagttccttctgcaagtt 480 |||| ||| ||||||||||||||||| Sbjct: 1328 tatcggttaagttccttctgcaagtt 1303
>gb|AY106354.1| Zea mays PCO109407 mRNA sequence Length = 1769 Score = 210 bits (106), Expect = 3e-51 Identities = 181/206 (87%) Strand = Plus / Minus Query: 275 aatcagaacccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtac 334 ||||| || ||||||||||||||||| |||||||| |||||||| ||||| || ||||| Sbjct: 1530 aatcaaaaaccaaagaaaccaagctcagtcgccctttccttctcaaaggtttcgaagtat 1471 Query: 335 tggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaa 394 ||||||||||| || ||||| | || ||||| |||||||||||||| || ||||||||| Sbjct: 1470 tggtatatgattgtcacagcgagcaatataccagttcctgaaccaatcgcacccatgaaa 1411 Query: 395 tcagccagaacagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatg 454 |||||||| || |||||||| || |||||||| |||||||||||||||||||| |||||| Sbjct: 1410 tcagccaggacggtcaatgcgccaatgcatacaccaccaaatgcagcagcagtggggatg 1351 Query: 455 tatctgttcagttccttctgcaagtt 480 |||| ||| ||||||||||||||||| Sbjct: 1350 tatcggttaagttccttctgcaagtt 1325
>gb|AY110211.1| Zea mays CL336_2 mRNA sequence Length = 1189 Score = 206 bits (104), Expect = 5e-50 Identities = 179/204 (87%) Strand = Plus / Minus Query: 279 agaacccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtactggt 338 |||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| Sbjct: 897 agaaaccaaagaaaccaagctcggttgccctttccttctcgaatgtctcaaagtactggt 838 Query: 339 atatgatggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaatcag 398 ||||||| || ||||| | |||||| || |||||||| |||||||||||||||||||||| Sbjct: 837 atatgatagtgacagcgagcagaatgccagttcctgagccaattgcgcccatgaaatcag 778 Query: 399 ccagaacagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatgtatc 458 | || ||||| | || || ||||| ||||| |||||||| |||||||| |||||||||| Sbjct: 777 ctaggacagttagcgcgccaatgcacactcctccaaatgctgcagcagttgggatgtatc 718 Query: 459 tgttcagttccttctgcaagtttg 482 ||||||||||| | |||| ||||| Sbjct: 717 tgttcagttccctttgcaggtttg 694
>gb|AY044237.1| Hordeum vulgare Sec61 alpha subunit mRNA, complete cds Length = 1864 Score = 182 bits (92), Expect = 7e-43 Identities = 170/196 (86%) Strand = Plus / Minus Query: 287 aagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtactggtatatgatg 346 ||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||| Sbjct: 1539 aagaaaccaagctcggtcgccctttccttctcgaacgtctcgaagtattggtatatgatg 1480 Query: 347 gtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaatcagccagaaca 406 || || || | ||| ||||||||||||||||| ||||| |||||||||||||| || ||| Sbjct: 1479 gtgaccgcaagcagtataccggttcctgaaccgattgcacccatgaaatcagctaggaca 1420 Query: 407 gtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatgtatctgttcagt 466 |||| || || ||||| ||||| |||| ||||||||| || |||||||||||||||| Sbjct: 1419 gtcagcgcgccaatgcagactcctccaattgcagcagcggtggggatgtatctgttcaac 1360 Query: 467 tccttctgcaagtttg 482 ||| ||| |||||||| Sbjct: 1359 tccctctccaagtttg 1344
>ref|NM_001036399.1| Arabidopsis thaliana protein translocase AT2G34250 transcript variant AT2G34250.2 mRNA, complete cds Length = 1961 Score = 143 bits (72), Expect = 6e-31 Identities = 147/172 (85%) Strand = Plus / Minus Query: 311 tccttctcgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggtt 370 |||||||| |||||||| || |||||||||||||| || || ||||||||||| |||||| Sbjct: 1631 tccttctcaaaggtctcgaaatactggtatatgatcgtgaccgccaacagaattccggtt 1572 Query: 371 cctgaaccaattgcgcccatgaaatcagccagaacagtcaatgcaccgatgcatactcca 430 || || || || || |||||||||||||||| ||| || | ||||||||| || ||||| Sbjct: 1571 cccgacccgatggctcccatgaaatcagccaaaacggtaagtgcaccgatacaaactcct 1512 Query: 431 ccaaatgcagcagcagtagggatgtatctgttcagttccttctgcaagtttg 482 ||||| || || || || |||||||||||||||||||||||||| ||||||| Sbjct: 1511 ccaaaagctgctgctgttgggatgtatctgttcagttccttctgtaagtttg 1460
>ref|NM_128976.2| Arabidopsis thaliana protein translocase AT2G34250 transcript variant AT2G34250.1 mRNA, complete cds Length = 1882 Score = 143 bits (72), Expect = 6e-31 Identities = 147/172 (85%) Strand = Plus / Minus Query: 311 tccttctcgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggtt 370 |||||||| |||||||| || |||||||||||||| || || ||||||||||| |||||| Sbjct: 1558 tccttctcaaaggtctcgaaatactggtatatgatcgtgaccgccaacagaattccggtt 1499 Query: 371 cctgaaccaattgcgcccatgaaatcagccagaacagtcaatgcaccgatgcatactcca 430 || || || || || |||||||||||||||| ||| || | ||||||||| || ||||| Sbjct: 1498 cccgacccgatggctcccatgaaatcagccaaaacggtaagtgcaccgatacaaactcct 1439 Query: 431 ccaaatgcagcagcagtagggatgtatctgttcagttccttctgcaagtttg 482 ||||| || || || || |||||||||||||||||||||||||| ||||||| Sbjct: 1438 ccaaaagctgctgctgttgggatgtatctgttcagttccttctgtaagtttg 1387
>gb|BT000507.1| Arabidopsis thaliana endoplasmic reticulum insertion protein (At2g34250/F13P17.9) mRNA, complete cds Length = 1428 Score = 143 bits (72), Expect = 6e-31 Identities = 147/172 (85%) Strand = Plus / Minus Query: 311 tccttctcgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggtt 370 |||||||| |||||||| || |||||||||||||| || || ||||||||||| |||||| Sbjct: 1394 tccttctcaaaggtctcgaaatactggtatatgatcgtgaccgccaacagaattccggtt 1335 Query: 371 cctgaaccaattgcgcccatgaaatcagccagaacagtcaatgcaccgatgcatactcca 430 || || || || || |||||||||||||||| ||| || | ||||||||| || ||||| Sbjct: 1334 cccgacccgatggctcccatgaaatcagccaaaacggtaagtgcaccgatacaaactcct 1275 Query: 431 ccaaatgcagcagcagtagggatgtatctgttcagttccttctgcaagtttg 482 ||||| || || || || |||||||||||||||||||||||||| ||||||| Sbjct: 1274 ccaaaagctgctgctgttgggatgtatctgttcagttccttctgtaagtttg 1223
>gb|AC004481.3| Arabidopsis thaliana chromosome 2 clone F13P17 map ve016, complete sequence Length = 112763 Score = 143 bits (72), Expect = 6e-31 Identities = 147/172 (85%) Strand = Plus / Minus Query: 311 tccttctcgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggtt 370 |||||||| |||||||| || |||||||||||||| || || ||||||||||| |||||| Sbjct: 35025 tccttctcaaaggtctcgaaatactggtatatgatcgtgaccgccaacagaattccggtt 34966 Query: 371 cctgaaccaattgcgcccatgaaatcagccagaacagtcaatgcaccgatgcatactcca 430 || || || || || |||||||||||||||| ||| || | ||||||||| || ||||| Sbjct: 34965 cccgacccgatggctcccatgaaatcagccaaaacggtaagtgcaccgatacaaactcct 34906 Query: 431 ccaaatgcagcagcagtagggatgtatctgttcagttccttctgcaagtttg 482 ||||| || || || || |||||||||||||||||||||||||| ||||||| Sbjct: 34905 ccaaaagctgctgctgttgggatgtatctgttcagttccttctgtaagtttg 34854
>gb|AF367298.1| Arabidopsis thaliana At2g34250/F13P17.9 mRNA, complete cds Length = 1804 Score = 143 bits (72), Expect = 6e-31 Identities = 147/172 (85%) Strand = Plus / Minus Query: 311 tccttctcgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggtt 370 |||||||| |||||||| || |||||||||||||| || || ||||||||||| |||||| Sbjct: 1532 tccttctcaaaggtctcgaaatactggtatatgatcgtgaccgccaacagaattccggtt 1473 Query: 371 cctgaaccaattgcgcccatgaaatcagccagaacagtcaatgcaccgatgcatactcca 430 || || || || || |||||||||||||||| ||| || | ||||||||| || ||||| Sbjct: 1472 cccgacccgatggctcccatgaaatcagccaaaacggtaagtgcaccgatacaaactcct 1413 Query: 431 ccaaatgcagcagcagtagggatgtatctgttcagttccttctgcaagtttg 482 ||||| || || || || |||||||||||||||||||||||||| ||||||| Sbjct: 1412 ccaaaagctgctgctgttgggatgtatctgttcagttccttctgtaagtttg 1361
>emb|BX820660.1|CNS0A8Q9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH57ZF07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 567 Score = 143 bits (72), Expect = 6e-31 Identities = 147/172 (85%) Strand = Plus / Minus Query: 311 tccttctcgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggtt 370 |||||||| |||||||| || |||||||||||||| || || ||||||||||| |||||| Sbjct: 252 tccttctcaaaggtctcgaaatactggtatatgatcgtgaccgccaacagaattccggtt 193 Query: 371 cctgaaccaattgcgcccatgaaatcagccagaacagtcaatgcaccgatgcatactcca 430 || || || || || |||||||||||||||| ||| || | ||||||||| || ||||| Sbjct: 192 cccgacccgatggctcccatgaaatcagccaaaacggtaagtgcaccgatacaaactcct 133 Query: 431 ccaaatgcagcagcagtagggatgtatctgttcagttccttctgcaagtttg 482 ||||| || || || || |||||||||||||||||||||||||| ||||||| Sbjct: 132 ccaaaagctgctgctgttgggatgtatctgttcagttccttctgtaagtttg 81
>emb|BX821829.1|CNS0A807 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL78ZE02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1831 Score = 143 bits (72), Expect = 6e-31 Identities = 147/172 (85%) Strand = Plus / Minus Query: 311 tccttctcgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggtt 370 |||||||| |||||||| || |||||||||||||| || || ||||||||||| |||||| Sbjct: 1542 tccttctcaaaggtctcgaaatactggtatatgatcgtgaccgccaacagaattccggtt 1483 Query: 371 cctgaaccaattgcgcccatgaaatcagccagaacagtcaatgcaccgatgcatactcca 430 || || || || || |||||||||||||||| ||| || | ||||||||| || ||||| Sbjct: 1482 cccgacccgatggctcccatgaaatcagccaaaacggtaagtgcaccgatacaaactcct 1423 Query: 431 ccaaatgcagcagcagtagggatgtatctgttcagttccttctgcaagtttg 482 ||||| || || || || |||||||||||||||||||||||||| ||||||| Sbjct: 1422 ccaaaagctgctgctgttgggatgtatctgttcagttccttctgtaagtttg 1371
>gb|AY088235.1| Arabidopsis thaliana clone 4598 mRNA, complete sequence Length = 1821 Score = 143 bits (72), Expect = 6e-31 Identities = 147/172 (85%) Strand = Plus / Minus Query: 311 tccttctcgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggtt 370 |||||||| |||||||| || |||||||||||||| || || ||||||||||| |||||| Sbjct: 1558 tccttctcaaaggtctcgaaatactggtatatgatcgtgaccgccaacagaattccggtt 1499 Query: 371 cctgaaccaattgcgcccatgaaatcagccagaacagtcaatgcaccgatgcatactcca 430 || || || || || |||||||||||||||| ||| || | ||||||||| || ||||| Sbjct: 1498 cccgacccgatggctcccatgaaatcagccaaaacggtaagtgcaccgatacaaactcct 1439 Query: 431 ccaaatgcagcagcagtagggatgtatctgttcagttccttctgcaagtttg 482 ||||| || || || || |||||||||||||||||||||||||| ||||||| Sbjct: 1438 ccaaaagctgctgctgttgggatgtatctgttcagttccttctgtaagtttg 1387
>ref|NM_102671.2| Arabidopsis thaliana protein translocase AT1G29310 mRNA, complete cds Length = 1688 Score = 101 bits (51), Expect = 2e-18 Identities = 168/207 (81%) Strand = Plus / Minus Query: 274 caatcagaacccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagta 333 ||||||||| |||||||||||||||||| | || | |||||||| ||||| ||||| || Sbjct: 1527 caatcagaatccaaagaaaccaagctcgctggctttttccttctcaaaggtttcaaaata 1468 Query: 334 ctggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaa 393 ||| |||||||| || || || | | || || || || || ||||| || |||||||| Sbjct: 1467 ctgatatatgattgtgactgcaagtaagattccagtccccgacccaatggctcccatgaa 1408 Query: 394 atcagccagaacagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggat 453 |||||||| |||||| | ||||||||||| ||||| ||||||||||| || || ||||| Sbjct: 1407 atcagccaaaacagtgagcgcaccgatgcacactcctccaaatgcagccgctgttgggat 1348 Query: 454 gtatctgttcagttccttctgcaagtt 480 ||| | |||||| ||||| || ||||| Sbjct: 1347 gtaccggttcagctccttttgtaagtt 1321
>gb|AY093047.1| Arabidopsis thaliana putative protein transport protein SEC61 alpha subunit (At1g29310) mRNA, complete cds Length = 1686 Score = 101 bits (51), Expect = 2e-18 Identities = 168/207 (81%) Strand = Plus / Minus Query: 274 caatcagaacccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagta 333 ||||||||| |||||||||||||||||| | || | |||||||| ||||| ||||| || Sbjct: 1525 caatcagaatccaaagaaaccaagctcgctggctttttccttctcaaaggtttcaaaata 1466 Query: 334 ctggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaa 393 ||| |||||||| || || || | | || || || || || ||||| || |||||||| Sbjct: 1465 ctgatatatgattgtgactgcaagtaagattccagtccccgacccaatggctcccatgaa 1406 Query: 394 atcagccagaacagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggat 453 |||||||| |||||| | ||||||||||| ||||| ||||||||||| || || ||||| Sbjct: 1405 atcagccaaaacagtgagcgcaccgatgcacactcctccaaatgcagccgctgttgggat 1346 Query: 454 gtatctgttcagttccttctgcaagtt 480 ||| | |||||| ||||| || ||||| Sbjct: 1345 gtaccggttcagctccttttgtaagtt 1319
>gb|AC021043.4|AC021043 Arabidopsis thaliana chromosome I BAC F28N24 genomic sequence, complete sequence Length = 154716 Score = 101 bits (51), Expect = 2e-18 Identities = 168/207 (81%) Strand = Plus / Plus Query: 274 caatcagaacccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagta 333 ||||||||| |||||||||||||||||| | || | |||||||| ||||| ||||| || Sbjct: 8861 caatcagaatccaaagaaaccaagctcgctggctttttccttctcaaaggtttcaaaata 8920 Query: 334 ctggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaa 393 ||| |||||||| || || || | | || || || || || ||||| || |||||||| Sbjct: 8921 ctgatatatgattgtgactgcaagtaagattccagtccccgacccaatggctcccatgaa 8980 Query: 394 atcagccagaacagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggat 453 |||||||| |||||| | ||||||||||| ||||| ||||||||||| || || ||||| Sbjct: 8981 atcagccaaaacagtgagcgcaccgatgcacactcctccaaatgcagccgctgttgggat 9040 Query: 454 gtatctgttcagttccttctgcaagtt 480 ||| | |||||| ||||| || ||||| Sbjct: 9041 gtaccggttcagctccttttgtaagtt 9067
>gb|AF190652.1|AF190652 Phaseolus vulgaris putative integral membrane protein (sec61) mRNA, sec61-1 allele, complete cds Length = 2150 Score = 95.6 bits (48), Expect = 1e-16 Identities = 168/208 (80%) Strand = Plus / Minus Query: 275 aatcagaacccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtac 334 |||||||| |||||||| |||||||| | || ||||||||||| || ||||| |||||| Sbjct: 1478 aatcagaaaccaaagaagccaagctcactagctctctccttctcaaatgtctcgaagtac 1419 Query: 335 tggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaa 394 || |||||||| || || || | || || || || |||||||| ||||| ||||||||| Sbjct: 1418 tgatatatgattgttactgcaagcaatattccagtccctgaaccgattgcccccatgaaa 1359 Query: 395 tcagccagaacagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatg 454 || |||| ||||||| ||||| || || | || |||||||| |||||||| || ||| Sbjct: 1358 tctgccaacacagtcagagcaccaatacaaatgcctccaaatgctgcagcagtgggaatg 1299 Query: 455 tatctgttcagttccttctgcaagtttg 482 |||| ||||| ||| ||||||| ||||| Sbjct: 1298 tatcggttcaattctttctgcaggtttg 1271
>gb|AY087495.1| Arabidopsis thaliana clone 36037 mRNA, complete sequence Length = 1595 Score = 93.7 bits (47), Expect = 5e-16 Identities = 167/207 (80%) Strand = Plus / Minus Query: 274 caatcagaacccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagta 333 ||||||||| |||||||||||||||||| | || | |||||||| ||||| ||||| || Sbjct: 1527 caatcagaatccaaagaaaccaagctcgctggctttttccttctcaaaggtttcaaaata 1468 Query: 334 ctggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaa 393 ||| |||||||| || || || | | || || || || || ||||| || | |||||| Sbjct: 1467 ctgatatatgattgtgactgcaagtaagattccagtccccgacccaatggctctcatgaa 1408 Query: 394 atcagccagaacagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggat 453 |||||||| |||||| | ||||||||||| ||||| ||||||||||| || || ||||| Sbjct: 1407 atcagccaaaacagtgagcgcaccgatgcacactcctccaaatgcagccgctgttgggat 1348 Query: 454 gtatctgttcagttccttctgcaagtt 480 ||| | |||||| ||||| || ||||| Sbjct: 1347 gtaccggttcagctccttttgtaagtt 1321
>gb|BC045117.1| Xenopus laevis protein transport protein SEC61 alpha subunit isoform 1, mRNA (cDNA clone MGC:53497 IMAGE:5572471), complete cds Length = 1894 Score = 91.7 bits (46), Expect = 2e-15 Identities = 118/142 (83%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| ||||||| ||||| || |||||||| ||||||||||| ||||| ||||| |||| Sbjct: 1464 cgaagatctcaaaatactgatagatgatggtgacagccaacaggatacctgttccagaac 1405 Query: 378 caattgcgcccatgaaatcagccagaacagtcaatgcaccgatgcatactccaccaaatg 437 |||| || |||| |||||| ||||| |||| | ||| |||||||| | || ||||| | Sbjct: 1404 caatggctcccaggaaatctgccaggacagagagtgctccgatgcaaagacctccaaaag 1345 Query: 438 cagcagcagtagggatgtatct 459 ||||||| || ||||||||||| Sbjct: 1344 cagcagctgttgggatgtatct 1323
>gb|AC091776.19| Chlamydomonas reinhardtii clone cr-4i21, complete sequence Length = 48498 Score = 81.8 bits (41), Expect = 2e-12 Identities = 74/85 (87%) Strand = Plus / Minus Query: 309 tctccttctcgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccgg 368 ||||||||||| | ||||| ||||||||||| |||||||| ||||||| ||| ||||||| Sbjct: 43536 tctccttctcgtacgtctcgaagtactggtaaatgatggtcacagccagcaggataccgg 43477 Query: 369 ttcctgaaccaattgcgcccatgaa 393 | || || ||||| ||||||||||| Sbjct: 43476 tgcccgagccaatggcgcccatgaa 43452
>gb|AC090435.28| Chlamydomonas reinhardtii clone cr-32m22, complete sequence Length = 79677 Score = 81.8 bits (41), Expect = 2e-12 Identities = 74/85 (87%) Strand = Plus / Minus Query: 309 tctccttctcgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccgg 368 ||||||||||| | ||||| ||||||||||| |||||||| ||||||| ||| ||||||| Sbjct: 22249 tctccttctcgtacgtctcgaagtactggtaaatgatggtcacagccagcaggataccgg 22190 Query: 369 ttcctgaaccaattgcgcccatgaa 393 | || || ||||| ||||||||||| Sbjct: 22189 tgcccgagccaatggcgcccatgaa 22165
>gb|AC121241.32| Medicago truncatula clone mth2-4n3, complete sequence Length = 114591 Score = 79.8 bits (40), Expect = 8e-12 Identities = 163/204 (79%) Strand = Plus / Plus Query: 279 agaacccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtactggt 338 |||| |||||||||||||||||| | || || |||||||| || |||||||||||||| | Sbjct: 23781 agaaaccaaagaaaccaagctcgctggctctttccttctcaaatgtctcaaagtactgat 23840 Query: 339 atatgatggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaatcag 398 | ||||| || || || | | || ||||| || ||||||||||| ||||||||||| | Sbjct: 23841 agatgattgttactgcaagtaatattccggtcccggaaccaattgcacccatgaaatctg 23900 Query: 399 ccagaacagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatgtatc 458 ||| || || | ||||| || || | ||| ||||||||||||||||| || || |||| Sbjct: 23901 ccaatactgttagggcaccaatacacattcctccaaatgcagcagcagtgggaatatatc 23960 Query: 459 tgttcagttccttctgcaagtttg 482 |||||| || || ||||| |||| Sbjct: 23961 ggttcagctctttttgcaaatttg 23984
>gb|AC146749.23| Medicago truncatula clone mth2-145a1, complete sequence Length = 130793 Score = 79.8 bits (40), Expect = 8e-12 Identities = 163/204 (79%) Strand = Plus / Minus Query: 279 agaacccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtactggt 338 |||| |||||||||||||||||| | || || |||||||| || |||||||||||||| | Sbjct: 111020 agaaaccaaagaaaccaagctcgctggctctttccttctcaaatgtctcaaagtactgat 110961 Query: 339 atatgatggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaatcag 398 | ||||| || || || | | || ||||| || ||||||||||| ||||||||||| | Sbjct: 110960 agatgattgttactgcaagtaatattccggtcccggaaccaattgcacccatgaaatctg 110901 Query: 399 ccagaacagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatgtatc 458 ||| || || | ||||| || || | ||| ||||||||||||||||| || || |||| Sbjct: 110900 ccaatactgttagggcaccaatacacattcctccaaatgcagcagcagtgggaatatatc 110841 Query: 459 tgttcagttccttctgcaagtttg 482 |||||| || || ||||| |||| Sbjct: 110840 ggttcagctctttttgcaaatttg 110817
>ref|NM_001040504.1| Bos taurus Sec61 alpha form 1 (SEC61A1), mRNA Length = 1634 Score = 67.9 bits (34), Expect = 3e-08 Identities = 76/90 (84%) Strand = Plus / Minus Query: 310 ctccttctcgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggt 369 ||||||| ||||| |||||||||||||||| |||||||| || |||| ||| || ||||| Sbjct: 1414 ctccttcacgaagatctcaaagtactggtagatgatggtgaccgccagcaggatcccggt 1355 Query: 370 tcctgaaccaattgcgcccatgaaatcagc 399 ||| || || || ||||||| ||| ||||| Sbjct: 1354 tccagacccgatggcgcccaagaagtcagc 1325
>gb|BT020701.1| Bos taurus Sec61 alpha 1 subunit (S. cerevisiae) (SEC61A1), mRNA, complete cds Length = 1634 Score = 67.9 bits (34), Expect = 3e-08 Identities = 76/90 (84%) Strand = Plus / Minus Query: 310 ctccttctcgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggt 369 ||||||| ||||| |||||||||||||||| |||||||| || |||| ||| || ||||| Sbjct: 1414 ctccttcacgaagatctcaaagtactggtagatgatggtgaccgccagcaggatcccggt 1355 Query: 370 tcctgaaccaattgcgcccatgaaatcagc 399 ||| || || || ||||||| ||| ||||| Sbjct: 1354 tccagacccgatggcgcccaagaagtcagc 1325
>gb|AY103473.1| Hemitripterus americanus Sec61-alpha mRNA, complete cds Length = 1536 Score = 65.9 bits (33), Expect = 1e-07 Identities = 123/153 (80%) Strand = Plus / Minus Query: 310 ctccttctcgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggt 369 ||||||| ||||| | |||||||||||||| ||||| || |||||||| || || || || Sbjct: 1451 ctccttcacgaagatttcaaagtactggtagatgattgtcacagccaagaggattcctgt 1392 Query: 370 tcctgaaccaattgcgcccatgaaatcagccagaacagtcaatgcaccgatgcatactcc 429 ||||||||||| || |||| ||| ||||||| |||| || | || ||||| | || Sbjct: 1391 acctgaaccaatggcacccaggaagtcagccatgacagacagccctcctatgcagaggcc 1332 Query: 430 accaaatgcagcagcagtagggatgtatctgtt 462 |||||| |||||||| || |||||||| ||||| Sbjct: 1331 accaaaggcagcagctgtggggatgtacctgtt 1299
>emb|CT033652.1| Platynereis dumerilii EST IB0AAA16CF07FM1 Length = 810 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 428 ccaccaaatgcagcagcagtagggatgtatctgttcagttc 468 |||||||| |||||||||||||| ||||||||||||||||| Sbjct: 666 ccaccaaaagcagcagcagtaggaatgtatctgttcagttc 706 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagc 354 ||||| |||||||||||||||| ||||| || ||||| Sbjct: 556 cgaagatctcaaagtactggtagatgatcgttacagc 592
>emb|CT033490.1| Platynereis dumerilii EST IB0AAA19BF11EM1 Length = 925 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 428 ccaccaaatgcagcagcagtagggatgtatctgttcagttc 468 |||||||| |||||||||||||| ||||||||||||||||| Sbjct: 448 ccaccaaaagcagcagcagtaggaatgtatctgttcagttc 408 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagc 354 ||||| |||||||||||||||| ||||| || ||||| Sbjct: 558 cgaagatctcaaagtactggtagatgatcgttacagc 522
>emb|CT033487.1| Platynereis dumerilii EST IB0AAA19BF12FM1 Length = 807 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 428 ccaccaaatgcagcagcagtagggatgtatctgttcagttc 468 |||||||| |||||||||||||| ||||||||||||||||| Sbjct: 671 ccaccaaaagcagcagcagtaggaatgtatctgttcagttc 711 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagc 354 ||||| |||||||||||||||| ||||| || ||||| Sbjct: 561 cgaagatctcaaagtactggtagatgatcgttacagc 597
>emb|CT033432.1| Platynereis dumerilii EST IB0AAA20BF03FM1 Length = 823 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 428 ccaccaaatgcagcagcagtagggatgtatctgttcagttc 468 |||||||| |||||||||||||| ||||||||||||||||| Sbjct: 673 ccaccaaaagcagcagcagtaggaatgtatctgttcagttc 713 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagc 354 ||||| |||||||||||||||| ||||| || ||||| Sbjct: 563 cgaagatctcaaagtactggtagatgatcgttacagc 599
>emb|CT033240.1| Platynereis dumerilii EST IB0AAA24BD10FM1 Length = 835 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 428 ccaccaaatgcagcagcagtagggatgtatctgttcagttc 468 |||||||| |||||||||||||| ||||||||||||||||| Sbjct: 670 ccaccaaaagcagcagcagtaggaatgtatctgttcagttc 710 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagc 354 ||||| |||||||||||||||| ||||| || ||||| Sbjct: 560 cgaagatctcaaagtactggtagatgatcgttacagc 596
>emb|CT033061.1| Platynereis dumerilii EST IB0AAA27BF01FM1 Length = 829 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 428 ccaccaaatgcagcagcagtagggatgtatctgttcagttc 468 |||||||| |||||||||||||| ||||||||||||||||| Sbjct: 669 ccaccaaaagcagcagcagtaggaatgtatctgttcagttc 709 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagc 354 ||||| |||||||||||||||| ||||| || ||||| Sbjct: 559 cgaagatctcaaagtactggtagatgatcgttacagc 595
>emb|CT032924.1| Platynereis dumerilii EST IB0AAA29CB07EM1 Length = 890 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 428 ccaccaaatgcagcagcagtagggatgtatctgttcagttc 468 |||||||| |||||||||||||| ||||||||||||||||| Sbjct: 764 ccaccaaaagcagcagcagtaggaatgtatctgttcagttc 724 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagc 354 ||||| |||||||||||||||| ||||| || ||||| Sbjct: 874 cgaagatctcaaagtactggtagatgatcgttacagc 838
>emb|CT032824.1| Platynereis dumerilii EST IB0AAA30DC12FM1 Length = 836 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 428 ccaccaaatgcagcagcagtagggatgtatctgttcagttc 468 |||||||| |||||||||||||| ||||||||||||||||| Sbjct: 671 ccaccaaaagcagcagcagtaggaatgtatctgttcagttc 711 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagc 354 ||||| |||||||||||||||| ||||| || ||||| Sbjct: 561 cgaagatctcaaagtactggtagatgatcgttacagc 597
>emb|CT032820.1| Platynereis dumerilii EST IB0AAA30DF04EM1 Length = 803 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 428 ccaccaaatgcagcagcagtagggatgtatctgttcagttc 468 |||||||| |||||||||||||| ||||||||||||||||| Sbjct: 565 ccaccaaaagcagcagcagtaggaatgtatctgttcagttc 525 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagc 354 ||||| |||||||||||||||| ||||| || ||||| Sbjct: 675 cgaagatctcaaagtactggtagatgatcgttacagc 639
>ref|NM_106519.1| Arabidopsis thaliana protein translocase AT1G78720 mRNA, complete cds Length = 1428 Score = 61.9 bits (31), Expect = 2e-06 Identities = 124/155 (80%) Strand = Plus / Minus Query: 317 tcgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaa 376 |||||||| || || ||||| |||||||| ||||| || | || || || || ||||| Sbjct: 1388 tcgaaggtttcgaaatactgatatatgattgtaaccgcaagaaggattccagtgcctgac 1329 Query: 377 ccaattgcgcccatgaaatcagccagaacagtcaatgcaccgatgcatactccaccaaat 436 ||||| || ||||| |||||||||| ||||| | ||||||||| || | |||||||| Sbjct: 1328 ccaatagctcccattaaatcagccaagacagtgagtgcaccgatacacagaccaccaaaa 1269 Query: 437 gcagcagcagtagggatgtatctgttcagttcctt 471 || ||||| || || ||||||| |||||||||||| Sbjct: 1268 gctgcagccgtgggaatgtatcggttcagttcctt 1234
>ref|XM_965057.1| PREDICTED: Tribolium castaneum similar to CG9539-PA (LOC658693), mRNA Length = 1943 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 329 aagtactggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcgccc 388 ||||||||||| || || || ||||||| || ||||||||| ||||||||||| || ||| Sbjct: 1521 aagtactggtaaataatagtgacagccagcaaaataccggtgcctgaaccaatcgcaccc 1462 Query: 389 atgaaatcagccagaacag 407 | |||||| |||| ||||| Sbjct: 1461 aagaaatcggccaaaacag 1443
>gb|AY064125.1| Aedes aegypti clone bR19Mc3 probable transport protein Sec61 alpha subunit (Sec61) mRNA, complete cds Length = 1962 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||| ||||||||||| |||||||| || |||| || ||||||||||| |||| Sbjct: 1525 cgaagatctcgaagtactggtagatgatggtgactgccagcaagataccggttccggaac 1466 Query: 378 caattgcgcccatgaaatc 396 | || || ||||||||||| Sbjct: 1465 cgatcgcacccatgaaatc 1447
>gb|AY064124.1| Aedes aegypti clone bR19Rc1 probable transport protein Sec61 alpha subunit (Sec61) mRNA, complete cds Length = 1962 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||| ||||||||||| |||||||| || |||| || ||||||||||| |||| Sbjct: 1525 cgaagatctcgaagtactggtagatgatggtgactgccagcaagataccggttccggaac 1466 Query: 378 caattgcgcccatgaaatc 396 | || || ||||||||||| Sbjct: 1465 cgatcgcacccatgaaatc 1447
>gb|AF392805.1|AF392805 Aedes aegypti strain RED probable transport protein Sec61 alpha subunit (Sec61) mRNA, complete cds Length = 2018 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||| ||||||||||| |||||||| || |||| || ||||||||||| |||| Sbjct: 1555 cgaagatctcgaagtactggtagatgatggtgactgccagcaagataccggttccggaac 1496 Query: 378 caattgcgcccatgaaatc 396 | || || ||||||||||| Sbjct: 1495 cgatcgcacccatgaaatc 1477
>gb|AF326338.1|AF326338 Aedes aegypti strain MOYO-R putative transport protein Sec61 alpha subunit (Sec61) mRNA, complete cds Length = 2021 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||| ||||||||||| |||||||| || |||| || ||||||||||| |||| Sbjct: 1556 cgaagatctcgaagtactggtagatgatggtgactgccagcaagataccggttccggaac 1497 Query: 378 caattgcgcccatgaaatc 396 | || || ||||||||||| Sbjct: 1496 cgatcgcacccatgaaatc 1478
>dbj|D25536.1|HROSEC61P Halocynthia roretzi mRNA for HRSec61, complete cds Length = 2057 Score = 61.9 bits (31), Expect = 2e-06 Identities = 82/99 (82%) Strand = Plus / Minus Query: 358 cagaataccggttcctgaaccaattgcgcccatgaaatcagccagaacagtcaatgcacc 417 |||||| |||||||| |||||||| || || ||||||||||| || || | ||| || || Sbjct: 1391 cagaattccggttccggaaccaatggctcctatgaaatcagcgagtacggacaacgcgcc 1332 Query: 418 gatgcatactccaccaaatgcagcagcagtagggatgta 456 ||| |||| || || || |||||||||||||||||||| Sbjct: 1331 gatacataaacctccgaacgcagcagcagtagggatgta 1293
>gb|AC005679.1|F9K20 Arabidopsis thaliana chromosome 1 BAC F9K20 sequence, complete sequence Length = 90425 Score = 61.9 bits (31), Expect = 2e-06 Identities = 124/155 (80%) Strand = Plus / Plus Query: 317 tcgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaa 376 |||||||| || || ||||| |||||||| ||||| || | || || || || ||||| Sbjct: 70419 tcgaaggtttcgaaatactgatatatgattgtaaccgcaagaaggattccagtgcctgac 70478 Query: 377 ccaattgcgcccatgaaatcagccagaacagtcaatgcaccgatgcatactccaccaaat 436 ||||| || ||||| |||||||||| ||||| | ||||||||| || | |||||||| Sbjct: 70479 ccaatagctcccattaaatcagccaagacagtgagtgcaccgatacacagaccaccaaaa 70538 Query: 437 gcagcagcagtagggatgtatctgttcagttcctt 471 || ||||| || || ||||||| |||||||||||| Sbjct: 70539 gctgcagccgtgggaatgtatcggttcagttcctt 70573
>gb|BC094530.1| Rattus norvegicus Sec61 alpha 1 subunit (S. cerevisiae), mRNA (cDNA clone MGC:105264 IMAGE:7320508), complete cds Length = 3061 Score = 60.0 bits (30), Expect = 7e-06 Identities = 75/90 (83%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| |||||||| || |||| ||| || ||||| || || | Sbjct: 1491 cgaagatctcaaagtactggtagatgatggtgaccgccagcaggatcccggtgccagacc 1432 Query: 378 caattgcgcccatgaaatcagccagaacag 407 | || || |||| |||||||||||| |||| Sbjct: 1431 cgatagcacccaggaaatcagccaggacag 1402
>ref|NM_199256.2| Rattus norvegicus Sec61 alpha 1 subunit (S. cerevisiae) (Sec61a1), mRNA Length = 3061 Score = 60.0 bits (30), Expect = 7e-06 Identities = 75/90 (83%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| |||||||| || |||| ||| || ||||| || || | Sbjct: 1491 cgaagatctcaaagtactggtagatgatggtgaccgccagcaggatcccggtgccagacc 1432 Query: 378 caattgcgcccatgaaatcagccagaacag 407 | || || |||| |||||||||||| |||| Sbjct: 1431 cgatagcacccaggaaatcagccaggacag 1402
>gb|AC125480.33| Medicago truncatula clone mth2-8c24, complete sequence Length = 119718 Score = 60.0 bits (30), Expect = 7e-06 Identities = 159/202 (78%) Strand = Plus / Minus Query: 279 agaacccaaagaaaccaagctcggtcgccctctccttctcgaaggtctcaaagtactggt 338 |||| |||||||| |||||||| | || || |||||||| || || ||||||||||| | Sbjct: 29536 agaaaccaaagaagccaagctcactggctctttccttctcaaatgtttcaaagtactgat 29477 Query: 339 atatgatggtaacagccaacagaataccggttcctgaaccaattgcgcccatgaaatcag 398 | ||||| || || || | || ||| || || |||||||| ||||| ||||| ||||| | Sbjct: 29476 agatgatcgttactgcaagcaaaatccccgtccctgaacctattgctcccataaaatctg 29417 Query: 399 ccagaacagtcaatgcaccgatgcatactccaccaaatgcagcagcagtagggatgtatc 458 ||| || |||| ||||| || || | || || ||||| |||||||| |||||||||| Sbjct: 29416 ccaacactgtcagagcaccaatacaaatgcctccgaatgctgcagcagtggggatgtatc 29357 Query: 459 tgttcagttccttctgcaagtt 480 ||| || || ||||||||||| Sbjct: 29356 ggtttagctctttctgcaagtt 29335
>gb|M96630.1|RATSEC61B Rattus sp. sec61-like protein mRNA, complete cds Length = 1738 Score = 60.0 bits (30), Expect = 7e-06 Identities = 75/90 (83%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| |||||||| || |||| ||| || ||||| || || | Sbjct: 1482 cgaagatctcaaagtactggtagatgatggtgaccgccagcaggatcccggtgccagacc 1423 Query: 378 caattgcgcccatgaaatcagccagaacag 407 | || || |||| |||||||||||| |||| Sbjct: 1422 cgatagcacccaggaaatcagccaggacag 1393
>gb|AY737549.1| Toxoptera citricida probable transport protein Sec61 alpha subunit mRNA, complete cds Length = 1431 Score = 58.0 bits (29), Expect = 3e-05 Identities = 101/125 (80%) Strand = Plus / Minus Query: 326 tcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcg 385 ||||| ||||||||||| || |||||||| ||||| ||||| || || || ||||| || Sbjct: 1376 tcaaaatactggtatataatagtaacagctaacaggataccagtgcccgatccaatggca 1317 Query: 386 cccatgaaatcagccagaacagtcaatgcaccgatgcatactccaccaaatgcagcagca 445 |||||||| || |||| |||| | |||||| || |||| || |||||||| |||||| Sbjct: 1316 cccatgaagtctgccaatacagatagtgcaccaatacatagccctccaaatgctgcagca 1257 Query: 446 gtagg 450 ||||| Sbjct: 1256 gtagg 1252
>gb|BC044351.1| Danio rerio SEC61, alpha subunit, mRNA (cDNA clone MGC:55256 IMAGE:3815921), complete cds Length = 2605 Score = 58.0 bits (29), Expect = 3e-05 Identities = 116/145 (80%) Strand = Plus / Minus Query: 324 tctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaaccaattg 383 ||||||||||||| || ||||||||||||||||| || || || ||||| || || || | Sbjct: 1485 tctcaaagtactgatagatgatggtaacagccaataggattcccgttccggagccgatgg 1426 Query: 384 cgcccatgaaatcagccagaacagtcaatgcaccgatgcatactccaccaaatgcagcag 443 |||||| ||| || |||| || | | | ||||| || | ||||||||||||||| | Sbjct: 1425 cgcccaggaagtccgccattactgaaaggcctccgatacacagtccaccaaatgcagccg 1366 Query: 444 cagtagggatgtatctgttcagttc 468 | || |||||||||||||| ||||| Sbjct: 1365 ctgtggggatgtatctgttgagttc 1341
>gb|BC066715.1| Danio rerio SEC61, alpha subunit, mRNA (cDNA clone MGC:76848 IMAGE:6960771), complete cds Length = 2580 Score = 58.0 bits (29), Expect = 3e-05 Identities = 116/145 (80%) Strand = Plus / Minus Query: 324 tctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaaccaattg 383 ||||||||||||| || ||||||||||||||||| || || || ||||| || || || | Sbjct: 1443 tctcaaagtactgatagatgatggtaacagccaataggattcccgttccggagccgatgg 1384 Query: 384 cgcccatgaaatcagccagaacagtcaatgcaccgatgcatactccaccaaatgcagcag 443 |||||| ||| || |||| || | | | ||||| || | ||||||||||||||| | Sbjct: 1383 cgcccaggaagtccgccattactgaaaggcctccgatacacagtccaccaaatgcagccg 1324 Query: 444 cagtagggatgtatctgttcagttc 468 | || |||||||||||||| ||||| Sbjct: 1323 ctgtggggatgtatctgttgagttc 1299
>emb|CR860842.1| Pongo pygmaeus mRNA; cDNA DKFZp469H0814 (from clone DKFZp469H0814) Length = 3582 Score = 58.0 bits (29), Expect = 3e-05 Identities = 71/85 (83%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| |||||||| || || | ||| || |||||||| || | Sbjct: 1496 cgaagatctcaaagtactggtagatgatggtgactgcgagcaggatcccggttccggacc 1437 Query: 378 caattgcgcccatgaaatcagccag 402 |||| || |||| ||| |||||||| Sbjct: 1436 caatggcacccaggaagtcagccag 1412
>emb|CR859335.1| Pongo pygmaeus mRNA; cDNA DKFZp469D1920 (from clone DKFZp469D1920) Length = 3576 Score = 58.0 bits (29), Expect = 3e-05 Identities = 71/85 (83%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| |||||||| || || | ||| || |||||||| || | Sbjct: 1495 cgaagatctcaaagtactggtagatgatggtgactgcgagcaggatcccggttccggacc 1436 Query: 378 caattgcgcccatgaaatcagccag 402 |||| || |||| ||| |||||||| Sbjct: 1435 caatggcacccaggaagtcagccag 1411
>emb|CR860233.1| Pongo pygmaeus mRNA; cDNA DKFZp469P1019 (from clone DKFZp469P1019) Length = 2792 Score = 58.0 bits (29), Expect = 3e-05 Identities = 71/85 (83%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| |||||||| || || | ||| || |||||||| || | Sbjct: 716 cgaagatctcaaagtactggtagatgatggtgactgcgagcaggatcccggttccggacc 657 Query: 378 caattgcgcccatgaaatcagccag 402 |||| || |||| ||| |||||||| Sbjct: 656 caatggcacccaggaagtcagccag 632
>gb|DQ416034.1| Acyrthosiphon pisum putative transport protein Sec61 alpha subunit mRNA, complete cds Length = 1431 Score = 58.0 bits (29), Expect = 3e-05 Identities = 101/125 (80%) Strand = Plus / Minus Query: 326 tcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcg 385 ||||| ||||||||||| || |||||||| ||||| ||||| || || || ||||| || Sbjct: 1376 tcaaaatactggtatataatagtaacagctaacaggatacccgtgcccgatccaatggca 1317 Query: 386 cccatgaaatcagccagaacagtcaatgcaccgatgcatactccaccaaatgcagcagca 445 |||||||| ||||||| |||| |||||||| || || | || ||||| || |||||| Sbjct: 1316 cccatgaagtcagccaacacagataatgcaccaatacaaagccctccaaacgctgcagca 1257 Query: 446 gtagg 450 ||||| Sbjct: 1256 gtagg 1252
>gb|AY029527.1| Danio rerio Sec61 alpha form A mRNA, complete cds Length = 2602 Score = 58.0 bits (29), Expect = 3e-05 Identities = 116/145 (80%) Strand = Plus / Minus Query: 324 tctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaaccaattg 383 ||||||||||||| || ||||||||||||||||| || || || ||||| || || || | Sbjct: 1503 tctcaaagtactgatagatgatggtaacagccaataggattcccgttccggagccgatgg 1444 Query: 384 cgcccatgaaatcagccagaacagtcaatgcaccgatgcatactccaccaaatgcagcag 443 |||||| ||| || |||| || | | | ||||| || | ||||||||||||||| | Sbjct: 1443 cgcccaggaagtccgccattactgaaaggcctccgatacacagtccaccaaatgcagccg 1384 Query: 444 cagtagggatgtatctgttcagttc 468 | || |||||||||||||| ||||| Sbjct: 1383 ctgtggggatgtatctgttgagttc 1359
>ref|NM_153659.1| Danio rerio SEC61, alpha subunit (sec61a), mRNA Length = 2602 Score = 58.0 bits (29), Expect = 3e-05 Identities = 116/145 (80%) Strand = Plus / Minus Query: 324 tctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaaccaattg 383 ||||||||||||| || ||||||||||||||||| || || || ||||| || || || | Sbjct: 1503 tctcaaagtactgatagatgatggtaacagccaataggattcccgttccggagccgatgg 1444 Query: 384 cgcccatgaaatcagccagaacagtcaatgcaccgatgcatactccaccaaatgcagcag 443 |||||| ||| || |||| || | | | ||||| || | ||||||||||||||| | Sbjct: 1443 cgcccaggaagtccgccattactgaaaggcctccgatacacagtccaccaaatgcagccg 1384 Query: 444 cagtagggatgtatctgttcagttc 468 | || |||||||||||||| ||||| Sbjct: 1383 ctgtggggatgtatctgttgagttc 1359
>gb|AY610173.1| Sus scrofa clone Clu_85032.scr.msk.p1.Contig1, mRNA sequence Length = 1950 Score = 58.0 bits (29), Expect = 3e-05 Identities = 107/133 (80%) Strand = Plus / Minus Query: 324 tctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaaccaattg 383 |||||||||||||||| ||||||||||| || | ||| || || ||||| || || || | Sbjct: 1463 tctcaaagtactggtagatgatggtaaccgcgagcaggatcccagttccagacccgatgg 1404 Query: 384 cgcccatgaaatcagccagaacagtcaatgcaccgatgcatactccaccaaatgcagcag 443 |||||| ||| |||||||| || | | || |||||||| | |||||||| || |||| Sbjct: 1403 cgcccaggaagtcagccaggacggagagggccccgatgcacagcccaccaaaggccgcag 1344 Query: 444 cagtagggatgta 456 |||| |||||||| Sbjct: 1343 cagtggggatgta 1331
>gb|AY113841.1| Dissostichus mawsoni Sec61 (SEC61) mRNA, complete cds Length = 1441 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 326 tcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcg 385 |||||||||||||| |||||||| |||||||| || || || || || |||||||| || Sbjct: 1376 tcaaagtactggtagatgatggtcacagccaagaggattcctgtccccgaaccaatggcc 1317 Query: 386 cccatgaaatcagcca 401 |||| ||| ||||||| Sbjct: 1316 cccaggaagtcagcca 1301
>gb|AY103475.1| Gadus ogac Sec61-alpha mRNA, complete cds Length = 2483 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| |||||||| || |||| ||| || ||||| ||||| | Sbjct: 1490 cgaagatctcaaagtactggtagatgatggtgacggccagcaggatgccggtgcctgagc 1431 Query: 378 caattgcgccca 389 | || ||||||| Sbjct: 1430 cgatggcgccca 1419
>gb|AY103472.1| Notothenia angustata Sec61-alpha mRNA, complete cds Length = 1549 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 326 tcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcg 385 |||||||||||||| |||||||| |||||||| || || || || || |||||||| || Sbjct: 1449 tcaaagtactggtagatgatggtcacagccaagaggattcctgtccccgaaccaatagcc 1390 Query: 386 cccatgaaatcagcca 401 |||| ||| ||||||| Sbjct: 1389 cccaggaagtcagcca 1374
>gb|AY103471.1| Pagothenia borchgrevinki Sec61-alpha mRNA, complete cds Length = 1550 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 326 tcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcg 385 |||||||||||||| |||||||| |||||||| || || || || || |||||||| || Sbjct: 1449 tcaaagtactggtagatgatggtcacagccaagaggattcctgtccccgaaccaatggcc 1390 Query: 386 cccatgaaatcagcca 401 |||| ||| ||||||| Sbjct: 1389 cccaggaagtcagcca 1374
>gb|AC011249.7| Drosophila melanogaster clone BACR37F23, complete sequence Length = 164973 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 324 tctcaaagtactggtatatgatggtaacagccaacagaatacc 366 |||||||||| ||||| |||||||| ||||||||||| ||||| Sbjct: 83471 tctcaaagtattggtagatgatggtcacagccaacaggatacc 83429
>gb|AC093100.2| Drosophila melanogaster clone BACR05J04, complete sequence Length = 214621 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 324 tctcaaagtactggtatatgatggtaacagccaacagaatacc 366 |||||||||| ||||| |||||||| ||||||||||| ||||| Sbjct: 7136 tctcaaagtattggtagatgatggtcacagccaacaggatacc 7094
>ref|XM_816127.1| Trypanosoma cruzi strain CL Brener pretranslocation protein, alpha subunit (Tc00.1047053510101.70) partial mRNA Length = 1446 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 324 tctcaaagtactggtatatgatggtaacagccaacagaatacc 366 ||||||||||||||| || ||||| ||||||||||||||||| Sbjct: 1387 tctcaaagtactggttgatcatggtcacagccaacagaatacc 1345
>ref|XM_815115.1| Trypanosoma cruzi strain CL Brener pretranslocation protein, alpha subunit (Tc00.1047053506297.240) partial mRNA Length = 1446 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 324 tctcaaagtactggtatatgatggtaacagccaacagaatacc 366 ||||||||||||||| || ||||| ||||||||||||||||| Sbjct: 1387 tctcaaagtactggttgatcatggtcacagccaacagaatacc 1345
>dbj|AB062670.1| Drosophila melanogaster mRNA for DSec61alpha, complete cds Length = 1984 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 324 tctcaaagtactggtatatgatggtaacagccaacagaatacc 366 |||||||||| ||||| |||||||| ||||||||||| ||||| Sbjct: 1466 tctcaaagtattggtagatgatggtcacagccaacaggatacc 1424
>ref|NM_135190.3| Drosophila melanogaster Sec61 CG9539-RA (Sec61alpha), mRNA Length = 2046 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 324 tctcaaagtactggtatatgatggtaacagccaacagaatacc 366 |||||||||| ||||| |||||||| ||||||||||| ||||| Sbjct: 1537 tctcaaagtattggtagatgatggtcacagccaacaggatacc 1495
>gb|AY069569.1| Drosophila melanogaster LD29847 full length cDNA Length = 1652 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 324 tctcaaagtactggtatatgatggtaacagccaacagaatacc 366 |||||||||| ||||| |||||||| ||||||||||| ||||| Sbjct: 1483 tctcaaagtattggtagatgatggtcacagccaacaggatacc 1441
>gb|AE003613.4| Drosophila melanogaster chromosome 2L, section 22 of 83 of the complete sequence Length = 280095 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 324 tctcaaagtactggtatatgatggtaacagccaacagaatacc 366 |||||||||| ||||| |||||||| ||||||||||| ||||| Sbjct: 260736 tctcaaagtattggtagatgatggtcacagccaacaggatacc 260778
>ref|NM_001003315.1| Canis familiaris Sec61 alpha 1 subunit (S. cerevisiae) (SEC61A1), mRNA Length = 3391 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Minus Query: 326 tcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcg 385 |||||||||||||| ||||| || || |||| ||| || |||||||| || ||||| ||| Sbjct: 1478 tcaaagtactggtagatgattgtgactgccagcaggatcccggttccagacccaatggcg 1419 Query: 386 cccatgaaatcagccag 402 |||| ||| || ||||| Sbjct: 1418 cccaggaagtcggccag 1402
>ref|NM_201577.1| Danio rerio SEC61, beta subunit (sec61b), mRNA Length = 2550 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Minus Query: 311 tccttctcgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggtt 370 |||||| | ||| |||||||||||||||| ||||| || || ||||||| ||| || ||| Sbjct: 1459 tccttcacaaagatctcaaagtactggtagatgatagtgacggccaacaaaattccagtt 1400 Query: 371 cctga 375 ||||| Sbjct: 1399 cctga 1395
>emb|BX957236.8| Zebrafish DNA sequence from clone DKEY-178O3 in linkage group 6, complete sequence Length = 211391 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Minus Query: 311 tccttctcgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggtt 370 |||||| | ||| |||||||||||||||| ||||| || || ||||||| ||| || ||| Sbjct: 82818 tccttcacaaagatctcaaagtactggtagatgatagtgacggccaacaaaattccagtt 82759 Query: 371 cctga 375 ||||| Sbjct: 82758 cctga 82754
>gb|BC002951.1| Homo sapiens protein transport protein SEC61 alpha subunit isoform 1, mRNA (cDNA clone MGC:1086 IMAGE:3510682), complete cds Length = 3571 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| ||||| || || || | ||| || |||||||| || | Sbjct: 1475 cgaagatctcaaagtactggtagatgattgtgactgcgagcaggatcccggttccagacc 1416 Query: 378 caattgcgcccatgaaatcagccag 402 |||| ||||| | ||| |||||||| Sbjct: 1415 caatggcgcctaggaagtcagccag 1391
>gb|AY103474.1| Boreogadus saida Sec61-alpha mRNA, complete cds Length = 2472 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaatacc 366 ||||| ||||||||||||| || |||||||| |||||||| || ||||| Sbjct: 1470 cgaagatctcaaagtactgatagatgatggtcacagccaagaggatacc 1422
>emb|BX027220.1|CNS08T60 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA40DB10 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 628 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||| ||||||||||| |||||||| || |||| ||| |||||||| || || | Sbjct: 326 cgaagatctcgaagtactggtagatgatggtgacggccagcaggataccggtgccggagc 267 Query: 378 caattgcgcccatgaaatcagccag 402 | || || |||||||| || ||||| Sbjct: 266 cgatcgcacccatgaagtcggccag 242
>emb|AL831940.1|HSM803192 Homo sapiens mRNA; cDNA DKFZp313F1012 (from clone DKFZp313F1012) Length = 3055 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| ||||| || || || | ||| || |||||||| || | Sbjct: 978 cgaagatctcaaagtactggtagatgattgtgactgcgagcaggatcccggttccagacc 919 Query: 378 caattgcgcccatgaaatcagccag 402 |||| ||||| | ||| |||||||| Sbjct: 918 caatggcgcctaggaagtcagccag 894
>emb|AL832821.1|HSM804132 Homo sapiens mRNA; cDNA DKFZp667E1224 (from clone DKFZp667E1224) Length = 3600 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| ||||| || || || | ||| || |||||||| || | Sbjct: 1501 cgaagatctcaaagtactggtagatgattgtgactgcgagcaggatcccggttccagacc 1442 Query: 378 caattgcgcccatgaaatcagccag 402 |||| ||||| | ||| |||||||| Sbjct: 1441 caatggcgcctaggaagtcagccag 1417
>emb|CR623601.1| full-length cDNA clone CS0DI026YB08 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1674 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| ||||| || || || | ||| || |||||||| || | Sbjct: 1467 cgaagatctcaaagtactggtagatgattgtgactgcgagcaggatcccggttccagacc 1408 Query: 378 caattgcgcccatgaaatcagccag 402 |||| ||||| | ||| |||||||| Sbjct: 1407 caatggcgcctaggaagtcagccag 1383
>dbj|AK074928.1| Homo sapiens cDNA FLJ90447 fis, clone NT2RP3001240, highly similar to Canis familiaris sec61 homologue mRNA Length = 3238 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| ||||| || || || | ||| || |||||||| || | Sbjct: 1176 cgaagatctcaaagtactggtagatgattgtgactgcgagcaggatcccggttccagacc 1117 Query: 378 caattgcgcccatgaaatcagccag 402 |||| ||||| | ||| |||||||| Sbjct: 1116 caatggcgcctaggaagtcagccag 1092
>dbj|AK074907.1| Homo sapiens cDNA FLJ90426 fis, clone NT2RP3000460, highly similar to Protein transport protein Sec61 alpha subunitisoform 1 Length = 2600 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| ||||| || || || | ||| || |||||||| || | Sbjct: 538 cgaagatctcaaagtactggtagatgattgtgactgcgagcaggatcccggttccagacc 479 Query: 378 caattgcgcccatgaaatcagccag 402 |||| ||||| | ||| |||||||| Sbjct: 478 caatggcgcctaggaagtcagccag 454
>dbj|AK074706.1| Homo sapiens cDNA FLJ90225 fis, clone NT2RM1000855, highly similar to Protein transport protein Sec61 alpha subunitisoform 1 Length = 3635 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| ||||| || || || | ||| || |||||||| || | Sbjct: 1568 cgaagatctcaaagtactggtagatgattgtgactgcgagcaggatcccggttccagacc 1509 Query: 378 caattgcgcccatgaaatcagccag 402 |||| ||||| | ||| |||||||| Sbjct: 1508 caatggcgcctaggaagtcagccag 1484
>dbj|AK075148.1| Homo sapiens cDNA FLJ90667 fis, clone PLACE1005410, highly similar to Protein transport protein Sec61 alpha subunitisoform 1 Length = 2633 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| ||||| || || || | ||| || |||||||| || | Sbjct: 568 cgaagatctcaaagtactggtagatgattgtgactgcgagcaggatcccggttccagacc 509 Query: 378 caattgcgcccatgaaatcagccag 402 |||| ||||| | ||| |||||||| Sbjct: 508 caatggcgcctaggaagtcagccag 484
>gb|AC149225.18| Danio rerio clone ch211-103f17, complete sequence Length = 185038 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 311 tccttctcgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggtt 370 |||||| | ||| |||||||||||||||| ||||| || || ||||||| ||| || ||| Sbjct: 86226 tccttcacaaagatctcaaagtactggtagatgatagtgacggccaacaaaattccagtt 86285 Query: 371 cctga 375 ||||| Sbjct: 86286 cctga 86290
>dbj|AK027458.1| Homo sapiens cDNA FLJ14552 fis, clone NT2RM2001760, highly similar to Homo sapiens sec61 homolog mRNA Length = 2379 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| ||||| || || || | ||| || |||||||| || | Sbjct: 313 cgaagatctcaaagtactggtagatgattgtgactgcgagcaggatcccggttccagacc 254 Query: 378 caattgcgcccatgaaatcagccag 402 |||| ||||| | ||| |||||||| Sbjct: 253 caatggcgcctaggaagtcagccag 229
>dbj|AK027454.1| Homo sapiens cDNA FLJ14548 fis, clone NT2RM2001648, highly similar to Homo sapiens sec61 homolog mRNA Length = 2421 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| ||||| || || || | ||| || |||||||| || | Sbjct: 354 cgaagatctcaaagtactggtagatgattgtgactgcgagcaggatcccggttccagacc 295 Query: 378 caattgcgcccatgaaatcagccag 402 |||| ||||| | ||| |||||||| Sbjct: 294 caatggcgcctaggaagtcagccag 270
>dbj|AK027452.1| Homo sapiens cDNA FLJ14546 fis, clone NT2RM2001613, highly similar to Homo sapiens sec61 homolog mRNA Length = 2601 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| ||||| || || || | ||| || |||||||| || | Sbjct: 534 cgaagatctcaaagtactggtagatgattgtgactgcgagcaggatcccggttccagacc 475 Query: 378 caattgcgcccatgaaatcagccag 402 |||| ||||| | ||| |||||||| Sbjct: 474 caatggcgcctaggaagtcagccag 450
>dbj|AK027423.1| Homo sapiens cDNA FLJ14517 fis, clone NT2RM1000833, highly similar to Homo sapiens sec61 homolog mRNA Length = 3635 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| ||||| || || || | ||| || |||||||| || | Sbjct: 1568 cgaagatctcaaagtactggtagatgattgtgactgcgagcaggatcccggttccagacc 1509 Query: 378 caattgcgcccatgaaatcagccag 402 |||| ||||| | ||| |||||||| Sbjct: 1508 caatggcgcctaggaagtcagccag 1484
>dbj|AK001689.1| Homo sapiens cDNA FLJ10827 fis, clone NT2RP4001117, highly similar to PROTEIN TRANSPORT PROTEIN SEC61 ALPHA SUBUNIT Length = 2690 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| ||||| || || || | ||| || |||||||| || | Sbjct: 628 cgaagatctcaaagtactggtagatgattgtgactgcgagcaggatcccggttccagacc 569 Query: 378 caattgcgcccatgaaatcagccag 402 |||| ||||| | ||| |||||||| Sbjct: 568 caatggcgcctaggaagtcagccag 544
>gb|AY034614.1| Danio rerio Sec61 alpha form B mRNA, complete cds Length = 2550 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Minus Query: 311 tccttctcgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggtt 370 |||||| | ||| |||||||||||||||| ||||| || || ||||||| ||| || ||| Sbjct: 1459 tccttcacaaagatctcaaagtactggtagatgatagtgacggccaacaaaattccagtt 1400 Query: 371 cctga 375 ||||| Sbjct: 1399 cctga 1395
>gb|AF346602.1|AF346602 Homo sapiens Sec61 alpha form 1 mRNA, complete cds Length = 1680 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| ||||| || || || | ||| || |||||||| || | Sbjct: 1450 cgaagatctcaaagtactggtagatgattgtgactgcgagcaggatcccggttccagacc 1391 Query: 378 caattgcgcccatgaaatcagccag 402 |||| ||||| | ||| |||||||| Sbjct: 1390 caatggcgcctaggaagtcagccag 1366
>gb|AF346600.1|AF346600 Oncorhynchus mykiss Sec61 alpha form A mRNA, complete cds Length = 1643 Score = 50.1 bits (25), Expect = 0.007 Identities = 115/145 (79%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| |||||||| || ||||| || || || || || |||| Sbjct: 1429 cgaagatctcaaagtactggtagatgatggtgacggccaataggattccagtacccgaac 1370 Query: 378 caattgcgcccatgaaatcagccagaacagtcaatgcaccgatgcatactccaccaaatg 437 | || || |||| ||| ||||||| |||| || |||| ||||||| ||||| || | Sbjct: 1369 cgatggcacccaggaagtcagccatgacagacagcccacctatgcataggccaccgaagg 1310 Query: 438 cagcagcagtagggatgtatctgtt 462 | ||||| || |||||||| ||||| Sbjct: 1309 ctgcagccgtggggatgtacctgtt 1285
>ref|NM_013336.3| Homo sapiens Sec61 alpha 1 subunit (S. cerevisiae) (SEC61A1), mRNA Length = 3656 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| ||||| || || || | ||| || |||||||| || | Sbjct: 1568 cgaagatctcaaagtactggtagatgattgtgactgcgagcaggatcccggttccagacc 1509 Query: 378 caattgcgcccatgaaatcagccag 402 |||| ||||| | ||| |||||||| Sbjct: 1508 caatggcgcctaggaagtcagccag 1484
>gb|AF077032.1| Homo sapiens sec61 homolog mRNA, complete cds Length = 3561 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| ||||| || || || | ||| || |||||||| || | Sbjct: 1474 cgaagatctcaaagtactggtagatgattgtgactgcgagcaggatcccggttccagacc 1415 Query: 378 caattgcgcccatgaaatcagccag 402 |||| ||||| | ||| |||||||| Sbjct: 1414 caatggcgcctaggaagtcagccag 1390
>dbj|AK129816.1| Homo sapiens cDNA FLJ26305 fis, clone DMC07965 Length = 2174 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| ||||| || || || | ||| || |||||||| || | Sbjct: 107 cgaagatctcaaagtactggtagatgattgtgactgcgagcaggatcccggttccagacc 48 Query: 378 caattgcgcccatgaaatcagccag 402 |||| ||||| | ||| |||||||| Sbjct: 47 caatggcgcctaggaagtcagccag 23
>ref|XM_319948.2| Anopheles gambiae str. PEST ENSANGP00000016786 (ENSANGG00000014297), partial mRNA Length = 1431 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||| ||||||||||| |||||||| || |||| ||| |||||||| || || | Sbjct: 1384 cgaagatctcgaagtactggtagatgatggtgacggccagcaggataccggtgccggagc 1325 Query: 378 caattgcgcccatgaaatcagccag 402 | || || |||||||| || ||||| Sbjct: 1324 cgatcgcacccatgaagtcggccag 1300
>gb|BC048881.1| Danio rerio SEC61, beta subunit, mRNA (cDNA clone MGC:55672 IMAGE:3815496), complete cds Length = 2396 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Minus Query: 311 tccttctcgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggtt 370 |||||| | ||| |||||||||||||||| ||||| || || ||||||| ||| || ||| Sbjct: 1460 tccttcacaaagatctcaaagtactggtagatgatagtgacggccaacaaaattccagtt 1401 Query: 371 cctga 375 ||||| Sbjct: 1400 cctga 1396
>gb|AC011311.11| Homo sapiens 3 BAC RP11-525K18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 187628 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Plus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| ||||| || || || | ||| || |||||||| || | Sbjct: 10791 cgaagatctcaaagtactggtagatgattgtgactgcgagcaggatcccggttccagacc 10850 Query: 378 caattgcgcccatgaaatcagccag 402 |||| ||||| | ||| |||||||| Sbjct: 10851 caatggcgcctaggaagtcagccag 10875
>gb|AF084458.1|HSEC61 Homo sapiens sec61 homolog mRNA, complete cds Length = 3561 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaac 377 ||||| |||||||||||||||| ||||| || || || | ||| || |||||||| || | Sbjct: 1474 cgaagatctcaaagtactggtagatgattgtgactgcgagcaggatcccggttccagacc 1415 Query: 378 caattgcgcccatgaaatcagccag 402 |||| ||||| | ||| |||||||| Sbjct: 1414 caatggcgcctaggaagtcagccag 1390
>gb|M96629.1|DOGSEC61A Canis familiaris sec61 homologue mRNA, complete cds Length = 3391 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Minus Query: 326 tcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcg 385 |||||||||||||| ||||| || || |||| ||| || |||||||| || ||||| ||| Sbjct: 1478 tcaaagtactggtagatgattgtgactgccagcaggatcccggttccagacccaatggcg 1419 Query: 386 cccatgaaatcagccag 402 |||| ||| || ||||| Sbjct: 1418 cccaggaagtcggccag 1402
>gb|AY103476.1| Bovichtus variegatus Sec61-alpha mRNA, complete cds Length = 1551 Score = 48.1 bits (24), Expect = 0.027 Identities = 63/76 (82%) Strand = Plus / Minus Query: 326 tcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaaccaattgcg 385 |||||||||||||| ||||| || |||||||| || || || || || |||||||| || Sbjct: 1450 tcaaagtactggtagatgattgtcacagccaaaaggattcctgtacccgaaccaatggca 1391 Query: 386 cccatgaaatcagcca 401 |||| ||| ||||||| Sbjct: 1390 cccaggaagtcagcca 1375
>gb|AF346601.1|AF346601 Oncorhynchus mykiss Sec61 alpha form B mRNA, complete cds Length = 1528 Score = 48.1 bits (24), Expect = 0.027 Identities = 48/56 (85%) Strand = Plus / Minus Query: 326 tcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaaccaat 381 |||||||||||||| |||||||| || |||| ||| ||||| ||||| || ||||| Sbjct: 1395 tcaaagtactggtagatgatggtgacggccagcaggatacccgttcccgagccaat 1340
>ref|NM_016906.2| Mus musculus Sec61 alpha 1 subunit (S. cerevisiae) (Sec61a1), mRNA Length = 3040 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggt 348 ||||| |||||||||||||||| |||||||| Sbjct: 1493 cgaagatctcaaagtactggtagatgatggt 1463
>gb|BC006020.1| Mus musculus Sec61 alpha 1 subunit (S. cerevisiae), mRNA (cDNA clone IMAGE:3488736) Length = 2641 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggt 348 ||||| |||||||||||||||| |||||||| Sbjct: 1077 cgaagatctcaaagtactggtagatgatggt 1047
>gb|BC003707.1| Mus musculus Sec61 alpha 1 subunit (S. cerevisiae), mRNA (cDNA clone MGC:5676 IMAGE:3592772), complete cds Length = 2982 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggt 348 ||||| |||||||||||||||| |||||||| Sbjct: 1418 cgaagatctcaaagtactggtagatgatggt 1388
>dbj|AK153055.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830120D02 product:Sec61 alpha 1 subunit (S. cerevisiae), full insert sequence Length = 3029 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggt 348 ||||| |||||||||||||||| |||||||| Sbjct: 1482 cgaagatctcaaagtactggtagatgatggt 1452
>dbj|AK159349.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420017L22 product:Sec61 alpha 1 subunit (S. cerevisiae), full insert sequence Length = 3025 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggt 348 ||||| |||||||||||||||| |||||||| Sbjct: 1480 cgaagatctcaaagtactggtagatgatggt 1450
>dbj|AK167484.1| Mus musculus 14 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:I530016O21 product:Sec61 alpha 1 subunit (S. cerevisiae), full insert sequence Length = 2968 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggt 348 ||||| |||||||||||||||| |||||||| Sbjct: 1422 cgaagatctcaaagtactggtagatgatggt 1392
>dbj|AK088473.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430018I05 product:SEC61, alpha subunit (S. cerevisiae), full insert sequence Length = 3040 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggt 348 ||||| |||||||||||||||| |||||||| Sbjct: 1493 cgaagatctcaaagtactggtagatgatggt 1463
>gb|AC154038.1| Mus musculus 6 BAC RP23-49L8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 213878 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 318 cgaaggtctcaaagtactggtatatgatggt 348 ||||| |||||||||||||||| |||||||| Sbjct: 79151 cgaagatctcaaagtactggtagatgatggt 79181
>gb|AF222743.1|AF222743 Mus musculus Sec61 alpha-1 mRNA, complete cds Length = 1482 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggt 348 ||||| |||||||||||||||| |||||||| Sbjct: 1414 cgaagatctcaaagtactggtagatgatggt 1384
>gb|AF145253.1|AF145253 Mus musculus Sec61 alpha isoform 1 mRNA, complete cds Length = 1482 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggt 348 ||||| |||||||||||||||| |||||||| Sbjct: 1414 cgaagatctcaaagtactggtagatgatggt 1384
>dbj|AB032902.1| Mus musculus Sec61 mRNA, complete cds Length = 1804 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 318 cgaaggtctcaaagtactggtatatgatggt 348 ||||| |||||||||||||||| |||||||| Sbjct: 1504 cgaagatctcaaagtactggtagatgatggt 1474
>gb|AY113840.1| Harpagifer antarcticus Sec61 (SEC61) mRNA, complete cds Length = 1453 Score = 44.1 bits (22), Expect = 0.42 Identities = 40/46 (86%) Strand = Plus / Minus Query: 324 tctcaaagtactggtatatgatggtaacagccaacagaataccggt 369 ||||||||||||| || |||||||| || |||| ||| |||||||| Sbjct: 1400 tctcaaagtactgatagatgatggtgacggccagcaggataccggt 1355
>ref|XM_660476.1| Cryptosporidium hominis TU502 Pfsec61 (Chro.70118) partial mRNA Length = 1422 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 428 ccaccaaatgcagcagcagtagggatgta 456 |||||||| ||||||||||| |||||||| Sbjct: 1277 ccaccaaaggcagcagcagtggggatgta 1249
>emb|AL390199.10| Human DNA sequence from clone RP11-552F24 on chromosome Xq25-26.1, complete sequence Length = 69951 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 25 atagtcaaaaacatgagaagtctac 49 |||||||||||| |||||||||||| Sbjct: 61599 atagtcaaaaacctgagaagtctac 61575
>emb|AL669838.22| Mouse DNA sequence from clone RP23-324A4 on chromosome 11 Contains the Adcy1 gene for adenylate cyclase 1, a novel gene and a CpG island, complete sequence Length = 189132 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 197 agccagccaagcagtactgtg 217 ||||||||||||||||||||| Sbjct: 61129 agccagccaagcagtactgtg 61109
>emb|AL662959.3|OSJN00160 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019G23, complete sequence Length = 150305 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 atcaatcagaacccaaagaaa 292 ||||||||||||||||||||| Sbjct: 111961 atcaatcagaacccaaagaaa 111981
>emb|AL096856.1|ATT24C20 Arabidopsis thaliana DNA chromosome 3, BAC clone T24C20 Length = 103889 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 311 tccttctcgaaggtctcaaag 331 ||||||||||||||||||||| Sbjct: 73084 tccttctcgaaggtctcaaag 73064
>ref|XM_628281.1| Cryptosporidium parvum Iowa II putative Sec61 (cgd7_950), partial mRNA Length = 1422 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 428 ccaccaaatgcagcagcagtagggatgta 456 |||||||| ||||||||||| |||||||| Sbjct: 1277 ccaccaaaggcagcagcagtggggatgta 1249
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 atcaatcagaacccaaagaaa 292 ||||||||||||||||||||| Sbjct: 4484229 atcaatcagaacccaaagaaa 4484249
>gb|AF525215.1| Takifugu rubripes Mx (Mx) gene, complete cds Length = 80367 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Plus Query: 326 tcaaagtactggtatatgatggtaacagccaacagaataccggttcctgaacc 378 |||||||||||||| |||||||| || ||||| || || ||||| || ||||| Sbjct: 12895 tcaaagtactggtagatgatggtcacggccaagaggattccggtacccgaacc 12947
>ref|XM_341558.2| PREDICTED: Rattus norvegicus Sec61, alpha subunit 2 (S. cerevisiae) (predicted) (Sec61a2_predicted), mRNA Length = 2169 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Minus Query: 413 gcaccgatgcatactccaccaaatgcagcagcagtagggatgtatctgttcag 465 ||||||||||||| || ||||| ||||| || || |||||||| |||||||| Sbjct: 1491 gcaccgatgcatagacccccaaaggcagctgctgtggggatgtacctgttcag 1439
>gb|AC127686.4| Mus musculus BAC clone RP24-188G23 from 3, complete sequence Length = 173474 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 cagccagccaagcagtactgt 216 ||||||||||||||||||||| Sbjct: 87791 cagccagccaagcagtactgt 87811
>gb|AC144776.2| Mus musculus BAC clone RP23-357B5 from chromosome 16, complete sequence Length = 190860 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 tgtatctgttcagttccttc 472 |||||||||||||||||||| Sbjct: 39904 tgtatctgttcagttccttc 39885
>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome Length = 1827111 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 428 ccaccaaatgcagcagcagtaggg 451 |||||||||||| ||||||||||| Sbjct: 1271555 ccaccaaatgcaacagcagtaggg 1271578
>emb|CT009509.7| Mouse DNA sequence from clone RP23-140C10 on chromosome 13, complete sequence Length = 218144 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 cagccagccaagcagtactg 215 |||||||||||||||||||| Sbjct: 106487 cagccagccaagcagtactg 106468
>gb|AC107759.18| Mus musculus chromosome 5, clone RP23-193N17, complete sequence Length = 262970 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 caaccaaaacagccagccaa 206 |||||||||||||||||||| Sbjct: 165739 caaccaaaacagccagccaa 165720
>gb|DQ400445.1| Ictalurus punctatus immunoglobulin heavy chain gene locus, partial sequence and unknown gene Length = 257153 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 gcagcagcagtagggatgta 456 |||||||||||||||||||| Sbjct: 77860 gcagcagcagtagggatgta 77841
>emb|AL355362.7| Human DNA sequence from clone RP3-480M22 on chromosome 6 Contains the 5' end of the gene for p53-induced protein PIGPC1 (PERP) and a CpG island, complete sequence Length = 23812 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 accaaatgcagcagcagtag 449 |||||||||||||||||||| Sbjct: 11620 accaaatgcagcagcagtag 11601
>ref|XM_964922.1| PREDICTED: Tribolium castaneum similar to CG1007-PA (LOC658540), mRNA Length = 1937 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 aacattcagttgctatatag 28 |||||||||||||||||||| Sbjct: 1884 aacattcagttgctatatag 1865
>ref|XM_797003.1| PREDICTED: Strongylocentrotus purpuratus similar to CG9539-PA, transcript variant 8 (LOC576070), mRNA Length = 2918 Score = 40.1 bits (20), Expect = 6.5 Identities = 44/52 (84%) Strand = Plus / Minus Query: 413 gcaccgatgcatactccaccaaatgcagcagcagtagggatgtatctgttca 464 ||||||||||| | |||||||| || || ||||| |||||||| ||||||| Sbjct: 1383 gcaccgatgcacagaccaccaaaggctgctgcagttgggatgtacctgttca 1332
>ref|XM_796992.1| PREDICTED: Strongylocentrotus purpuratus similar to CG9539-PA, transcript variant 7 (LOC576070), mRNA Length = 2924 Score = 40.1 bits (20), Expect = 6.5 Identities = 44/52 (84%) Strand = Plus / Minus Query: 413 gcaccgatgcatactccaccaaatgcagcagcagtagggatgtatctgttca 464 ||||||||||| | |||||||| || || ||||| |||||||| ||||||| Sbjct: 1389 gcaccgatgcacagaccaccaaaggctgctgcagttgggatgtacctgttca 1338
>ref|XM_796979.1| PREDICTED: Strongylocentrotus purpuratus similar to CG9539-PA, transcript variant 6 (LOC576070), mRNA Length = 2912 Score = 40.1 bits (20), Expect = 6.5 Identities = 44/52 (84%) Strand = Plus / Minus Query: 413 gcaccgatgcatactccaccaaatgcagcagcagtagggatgtatctgttca 464 ||||||||||| | |||||||| || || ||||| |||||||| ||||||| Sbjct: 1377 gcaccgatgcacagaccaccaaaggctgctgcagttgggatgtacctgttca 1326
>ref|XM_796967.1| PREDICTED: Strongylocentrotus purpuratus similar to CG9539-PA, transcript variant 5 (LOC576070), mRNA Length = 2726 Score = 40.1 bits (20), Expect = 6.5 Identities = 44/52 (84%) Strand = Plus / Minus Query: 413 gcaccgatgcatactccaccaaatgcagcagcagtagggatgtatctgttca 464 ||||||||||| | |||||||| || || ||||| |||||||| ||||||| Sbjct: 1191 gcaccgatgcacagaccaccaaaggctgctgcagttgggatgtacctgttca 1140
>ref|XM_796949.1| PREDICTED: Strongylocentrotus purpuratus similar to CG9539-PA, transcript variant 4 (LOC576070), mRNA Length = 2921 Score = 40.1 bits (20), Expect = 6.5 Identities = 44/52 (84%) Strand = Plus / Minus Query: 413 gcaccgatgcatactccaccaaatgcagcagcagtagggatgtatctgttca 464 ||||||||||| | |||||||| || || ||||| |||||||| ||||||| Sbjct: 1386 gcaccgatgcacagaccaccaaaggctgctgcagttgggatgtacctgttca 1335
>ref|XM_796930.1| PREDICTED: Strongylocentrotus purpuratus similar to CG9539-PA, transcript variant 3 (LOC576070), mRNA Length = 2845 Score = 40.1 bits (20), Expect = 6.5 Identities = 44/52 (84%) Strand = Plus / Minus Query: 413 gcaccgatgcatactccaccaaatgcagcagcagtagggatgtatctgttca 464 ||||||||||| | |||||||| || || ||||| |||||||| ||||||| Sbjct: 1310 gcaccgatgcacagaccaccaaaggctgctgcagttgggatgtacctgttca 1259
>ref|XM_796907.1| PREDICTED: Strongylocentrotus purpuratus similar to CG9539-PA, transcript variant 2 (LOC576070), mRNA Length = 2374 Score = 40.1 bits (20), Expect = 6.5 Identities = 44/52 (84%) Strand = Plus / Minus Query: 413 gcaccgatgcatactccaccaaatgcagcagcagtagggatgtatctgttca 464 ||||||||||| | |||||||| || || ||||| |||||||| ||||||| Sbjct: 839 gcaccgatgcacagaccaccaaaggctgctgcagttgggatgtacctgttca 788
>ref|XM_775245.1| PREDICTED: Strongylocentrotus purpuratus similar to CG9539-PA, transcript variant 1 (LOC576070), mRNA Length = 2924 Score = 40.1 bits (20), Expect = 6.5 Identities = 44/52 (84%) Strand = Plus / Minus Query: 413 gcaccgatgcatactccaccaaatgcagcagcagtagggatgtatctgttca 464 ||||||||||| | |||||||| || || ||||| |||||||| ||||||| Sbjct: 1389 gcaccgatgcacagaccaccaaaggctgctgcagttgggatgtacctgttca 1338
>gb|AC104072.3| Homo sapiens BAC clone RP11-320H14 from 4, complete sequence Length = 112494 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 gcccatgaaatcagccagaa 404 |||||||||||||||||||| Sbjct: 5512 gcccatgaaatcagccagaa 5531
>gb|M64400.1|ICTHAA1 Ictalurus punctatus Ig rearranged heavy chain variable region, partial cds Length = 405 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 gcagcagcagtagggatgta 456 |||||||||||||||||||| Sbjct: 22 gcagcagcagtagggatgta 3
>ref|NM_074033.2| Caenorhabditis elegans Serpentine Receptor, class X family member (srx-134) (srx-134) mRNA, complete cds Length = 924 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 4 cccaaaacattcagttgctatata 27 ||||||| |||||||||||||||| Sbjct: 418 cccaaaatattcagttgctatata 441
>gb|DQ230631.1| Ictalurus punctatus clone 6H09AVH6 immunoglobulin heavy chain variable region mRNA, partial cds Length = 452 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 gcagcagcagtagggatgta 456 |||||||||||||||||||| Sbjct: 52 gcagcagcagtagggatgta 33
>gb|DQ230627.1| Ictalurus punctatus clone 6D10AVH6 immunoglobulin heavy chain variable region mRNA, partial cds Length = 460 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 gcagcagcagtagggatgta 456 |||||||||||||||||||| Sbjct: 48 gcagcagcagtagggatgta 29
>gb|DQ230625.1| Ictalurus punctatus clone 6C10AVH6 immunoglobulin heavy chain variable region mRNA, partial cds Length = 452 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 gcagcagcagtagggatgta 456 |||||||||||||||||||| Sbjct: 52 gcagcagcagtagggatgta 33
>gb|DQ230624.1| Ictalurus punctatus clone 6C09AVH6 immunoglobulin heavy chain variable region mRNA, partial cds Length = 454 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 gcagcagcagtagggatgta 456 |||||||||||||||||||| Sbjct: 48 gcagcagcagtagggatgta 29
>gb|DQ230622.1| Ictalurus punctatus clone 6C02AVH6 immunoglobulin heavy chain variable region mRNA, partial cds Length = 456 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 gcagcagcagtagggatgta 456 |||||||||||||||||||| Sbjct: 47 gcagcagcagtagggatgta 28
>gb|DQ230620.1| Ictalurus punctatus clone 6B01AVH6 immunoglobulin heavy chain variable region mRNA, partial cds Length = 461 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 gcagcagcagtagggatgta 456 |||||||||||||||||||| Sbjct: 52 gcagcagcagtagggatgta 33
>gb|DQ230614.1| Ictalurus punctatus clone 3B09AVH6 immunoglobulin heavy chain variable region mRNA, partial cds Length = 466 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 gcagcagcagtagggatgta 456 |||||||||||||||||||| Sbjct: 51 gcagcagcagtagggatgta 32
>gb|DQ230613.1| Ictalurus punctatus clone 2F12AVH6 immunoglobulin heavy chain variable region mRNA, partial cds Length = 467 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 gcagcagcagtagggatgta 456 |||||||||||||||||||| Sbjct: 52 gcagcagcagtagggatgta 33
>gb|DQ230612.1| Ictalurus punctatus clone 1H07AVH6 immunoglobulin heavy chain variable region mRNA, partial cds Length = 457 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 gcagcagcagtagggatgta 456 |||||||||||||||||||| Sbjct: 51 gcagcagcagtagggatgta 32
>gb|DQ230611.1| Ictalurus punctatus clone 1E09AVH6 immunoglobulin heavy chain variable region mRNA, partial cds Length = 456 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 gcagcagcagtagggatgta 456 |||||||||||||||||||| Sbjct: 44 gcagcagcagtagggatgta 25
>emb|AL929305.4| Zebrafish DNA sequence from clone DKEY-110K5, complete sequence Length = 166110 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 ccaccaaatgcagcagcagt 447 |||||||||||||||||||| Sbjct: 33945 ccaccaaatgcagcagcagt 33926
>gb|AC152984.2| Mus musculus 6 BAC RP23-462B3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 185001 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 ccaccaaatgcagcagcagt 447 |||||||||||||||||||| Sbjct: 119204 ccaccaaatgcagcagcagt 119223
>dbj|AP002985.2| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2542M24, complete sequence Length = 205152 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 gcccatgaaatcagccagaa 404 |||||||||||||||||||| Sbjct: 127652 gcccatgaaatcagccagaa 127671 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,285,323 Number of Sequences: 3902068 Number of extensions: 4285323 Number of successful extensions: 74962 Number of sequences better than 10.0: 167 Number of HSP's better than 10.0 without gapping: 167 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74616 Number of HSP's gapped (non-prelim): 338 length of query: 482 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 460 effective length of database: 17,147,199,772 effective search space: 7887711895120 effective search space used: 7887711895120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)