>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse|
            transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
            (RT); Integrase (IN)]
          Length = 1189

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 17   IYRNDQTHPDHPHQEGENIYVHRH 88
            +YR   +   HP Q G+++YV RH
Sbjct: 1098 LYRPGHSQTSHPFQVGDSVYVRRH 1121

>YAE7_YEAST (P39723) Protein YAL047C|
          Length = 622

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 2   DKTDPIYRNDQTHPDHPHQEGENIYVHRHA*FIEAKESRVAVT 130
           + TD  Y+ND+ H  + H + EN+  +  +  I A ESR   T
Sbjct: 249 ENTDGGYQNDEIHDSNNHIDTENVMANSTSLPISAVESRFEKT 291


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,785,433
Number of Sequences: 219361
Number of extensions: 302215
Number of successful extensions: 755
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 80,573,946
effective HSP length: 19
effective length of database: 76,406,087
effective search space used: 1833746088
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)