ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart25h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC091453.2| Mus musculus chromosome X clones RP21-19N11, RP21... 40 1.6
2emb|AL732461.23| Mouse DNA sequence from clone RP23-95K12 on chr... 40 1.6
3ref|XM_543402.2| PREDICTED: Canis familiaris similar to Deltex p... 38 6.3
4gb|AC138172.4| Mus musculus strain 129S6/SvEvTac clone rp22-554j... 38 6.3
5gb|AC166286.14| Medicago truncatula clone mth2-173c1, complete s... 38 6.3
6gb|U28804.1|ENU28804 Emericella nidulans SAGA (sagA) mRNA, compl... 38 6.3
7emb|BX890584.6| Mouse DNA sequence from clone RP23-160I11 on chr... 38 6.3
8gb|AC147053.3| Mus musculus BAC clone RP23-87B16 from 6, complet... 38 6.3

>gb|AC091453.2| Mus musculus chromosome X clones RP21-19N11, RP21-667A15, RP21-395M8
              complete sequence
          Length = 350000

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 67     aaacatatacgtacataggcatgc 90
              |||||||||| |||||||||||||
Sbjct: 117790 aaacatatacctacataggcatgc 117813



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>emb|AL732461.23| Mouse DNA sequence from clone RP23-95K12 on chromosome X, complete
              sequence
          Length = 245751

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 67     aaacatatacgtacataggcatgc 90
              |||||||||| |||||||||||||
Sbjct: 229209 aaacatatacctacataggcatgc 229232



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>ref|XM_543402.2| PREDICTED: Canis familiaris similar to Deltex protein 1 (Deltex-1)
           (Deltex1) (hDTX1) (LOC486276), mRNA
          Length = 1279

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 37  acacccagaccatccgcat 55
           |||||||||||||||||||
Sbjct: 842 acacccagaccatccgcat 860



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>gb|AC138172.4| Mus musculus strain 129S6/SvEvTac clone rp22-554j24, complete sequence
          Length = 101923

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 16    aatttataggaatgatcaa 34
             |||||||||||||||||||
Sbjct: 21594 aatttataggaatgatcaa 21612



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>gb|AC166286.14| Medicago truncatula clone mth2-173c1, complete sequence
          Length = 114609

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 77    gtacataggcatgcatgattcat 99
             ||||||| |||||||||||||||
Sbjct: 99190 gtacatatgcatgcatgattcat 99168



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>gb|U28804.1|ENU28804 Emericella nidulans SAGA (sagA) mRNA, complete cds
          Length = 1528

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 78   tacataggcatgcatgatt 96
            |||||||||||||||||||
Sbjct: 1478 tacataggcatgcatgatt 1460



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>emb|BX890584.6| Mouse DNA sequence from clone RP23-160I11 on chromosome X, complete
              sequence
          Length = 120359

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 60     agggtgaaaacatatacgt 78
              |||||||||||||||||||
Sbjct: 118309 agggtgaaaacatatacgt 118291



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>gb|AC147053.3| Mus musculus BAC clone RP23-87B16 from 6, complete sequence
          Length = 218532

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 16   aatttataggaatgatcaa 34
            |||||||||||||||||||
Sbjct: 6403 aatttataggaatgatcaa 6421


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 881,208
Number of Sequences: 3902068
Number of extensions: 881208
Number of successful extensions: 55295
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55287
Number of HSP's gapped (non-prelim): 8
length of query: 133
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 112
effective length of database: 17,151,101,840
effective search space: 1920923406080
effective search space used: 1920923406080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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