Clone Name | rbart25h07 |
---|---|
Clone Library Name | barley_pub |
>gb|AY623907.1| Oryza sativa (japonica cultivar-group) cultivar Tainung 67 phosphosulfolactate synthase-related protein (PSR) mRNA, complete cds Length = 909 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 362 aagccgcggaggcgctccaggttcatcacctcggagtg 399 ||||| ||||| ||||||||||||||||| |||||||| Sbjct: 845 aagcctcggagacgctccaggttcatcacgtcggagtg 808
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 362 aagccgcggaggcgctccaggttcatcacctcggagtg 399 ||||| ||||| ||||||||||||||||| |||||||| Sbjct: 28080513 aagcctcggagacgctccaggttcatcacgtcggagtg 28080550
>dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0547F09 Length = 140615 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 362 aagccgcggaggcgctccaggttcatcacctcggagtg 399 ||||| ||||| ||||||||||||||||| |||||||| Sbjct: 125332 aagcctcggagacgctccaggttcatcacgtcggagtg 125369
>dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0009H10 Length = 175754 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 362 aagccgcggaggcgctccaggttcatcacctcggagtg 399 ||||| ||||| ||||||||||||||||| |||||||| Sbjct: 11419 aagcctcggagacgctccaggttcatcacgtcggagtg 11456
>dbj|AK072958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149H22, full insert sequence Length = 1287 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 362 aagccgcggaggcgctccaggttcatcacctcggagtg 399 ||||| ||||| ||||||||||||||||| |||||||| Sbjct: 918 aagcctcggagacgctccaggttcatcacgtcggagtg 881
>gb|AC183664.3| Pan troglodytes BAC clone CH251-645D10 from chromosome 12, complete sequence Length = 176676 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 catcacattcacacacattc 60 |||||||||||||||||||| Sbjct: 39694 catcacattcacacacattc 39675
>ref|XM_974659.1| PREDICTED: Mus musculus zinc finger protein 26, transcript variant 1 (Zfp26), mRNA Length = 1203 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 cacagcctcatccttattac 133 |||||||||||||||||||| Sbjct: 587 cacagcctcatccttattac 568
>ref|XM_974728.1| PREDICTED: Mus musculus zinc finger protein 26, transcript variant 3 (Zfp26), mRNA Length = 6966 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 cacagcctcatccttattac 133 |||||||||||||||||||| Sbjct: 587 cacagcctcatccttattac 568
>ref|XM_134736.6| PREDICTED: Mus musculus zinc finger protein 26, transcript variant 1 (Zfp26), mRNA Length = 1203 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 cacagcctcatccttattac 133 |||||||||||||||||||| Sbjct: 587 cacagcctcatccttattac 568
>ref|XM_977486.1| PREDICTED: Mus musculus zinc finger protein 26, transcript variant 3 (Zfp26), mRNA Length = 7167 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 cacagcctcatccttattac 133 |||||||||||||||||||| Sbjct: 587 cacagcctcatccttattac 568
>ref|XM_907466.2| PREDICTED: Mus musculus zinc finger protein 26, transcript variant 3 (Zfp26), mRNA Length = 7167 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 cacagcctcatccttattac 133 |||||||||||||||||||| Sbjct: 587 cacagcctcatccttattac 568
>emb|AL845294.3| Mouse DNA sequence from clone RP23-285N19 on chromosome 4 Contains a ribosomal protein L9 (Rpl9) pseudogene, a cysteine-rich secretory protein 1 (Crisp1) pseudogene and a eukaryotic translation initiation factor 1A (Eif1a) pseudogene, complete sequence Length = 167418 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 tcatcacattcacacacatt 59 |||||||||||||||||||| Sbjct: 123009 tcatcacattcacacacatt 123028
>gb|AC079969.5| Homo sapiens chromosome 15, clone RP11-636P14, complete sequence Length = 227506 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ccctcagtacagttcacaca 224 |||||||||||||||||||| Sbjct: 65036 ccctcagtacagttcacaca 65055
>gb|AC058803.5| Homo sapiens chromosome 15, clone RP11-717I24, complete sequence Length = 203493 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 ccctcagtacagttcacaca 224 |||||||||||||||||||| Sbjct: 78407 ccctcagtacagttcacaca 78388
>gb|AC012518.19| Homo sapiens 12 BAC RP11-512G13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 106400 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 catcacattcacacacattc 60 |||||||||||||||||||| Sbjct: 16304 catcacattcacacacattc 16285
>dbj|AK039143.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230102C22 product:unclassifiable, full insert sequence Length = 1834 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 ctcatccttattacctgcta 139 |||||||||||||||||||| Sbjct: 1440 ctcatccttattacctgcta 1459
>gb|AC010843.10|AC010843 Drosophila melanogaster, chromosome X, region 12A-12A, BAC clone BACR08A22, complete sequence Length = 170914 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 acattcacacacattcgaaa 64 |||||||||||||||||||| Sbjct: 162756 acattcacacacattcgaaa 162737
>dbj|AK082002.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130093H07 product:zinc finger protein 26, full insert sequence Length = 2590 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 cacagcctcatccttattac 133 |||||||||||||||||||| Sbjct: 421 cacagcctcatccttattac 402
>gb|AC010995.11|AC010995 Drosophila melanogaster, chromosome X, region 12A-12A, BAC clone BACR30C16, complete sequence Length = 185810 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 acattcacacacattcgaaa 64 |||||||||||||||||||| Sbjct: 65094 acattcacacacattcgaaa 65075
>gb|AC096591.1| Homo sapiens BAC clone RP11-768F19 from 2, complete sequence Length = 182435 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 230 tcccagtacagaaaactcagctcc 253 ||||||||||||| |||||||||| Sbjct: 748 tcccagtacagaagactcagctcc 725
>gb|AC083865.2|AC083865 Homo sapiens chromosome 7 clone RP11-605P22, complete sequence Length = 218186 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 actcctcccagtacagaaaa 244 |||||||||||||||||||| Sbjct: 162084 actcctcccagtacagaaaa 162065
>gb|AC114776.3| Homo sapiens BAC clone RP11-480O8 from 2, complete sequence Length = 169190 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 230 tcccagtacagaaaactcagctcc 253 ||||||||||||| |||||||||| Sbjct: 167938 tcccagtacagaagactcagctcc 167915
>emb|AL928854.6| Zebrafish DNA sequence from clone CH211-59D2, complete sequence Length = 101762 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 catcacattcacacacattc 60 |||||||||||||||||||| Sbjct: 25615 catcacattcacacacattc 25596
>gb|AY955097.1| Aedes aegypti putative methoprene-tolerant protein (Met) mRNA, complete cds Length = 3926 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 tcagctccatcaacacttcgctta 269 ||||||||||||||||| |||||| Sbjct: 3215 tcagctccatcaacactccgctta 3238
>gb|AE003493.3| Drosophila melanogaster chromosome X, section 45 of 74 of the complete sequence Length = 307761 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 acattcacacacattcgaaa 64 |||||||||||||||||||| Sbjct: 17801 acattcacacacattcgaaa 17782
>gb|AY902310.1| Aedes aegypti putative methoprene-tolerant mutant mRNA, complete cds Length = 3135 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 tcagctccatcaacacttcgctta 269 ||||||||||||||||| |||||| Sbjct: 2702 tcagctccatcaacactccgctta 2725
>emb|BX530024.6| Zebrafish DNA sequence from clone RP71-39B20, complete sequence Length = 146464 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 atcatcacattcacacacat 58 |||||||||||||||||||| Sbjct: 110364 atcatcacattcacacacat 110345
>gb|AC105073.16| Mus musculus chromosome 1, clone RP23-288J11, complete sequence Length = 210509 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 ctcatccttattacctgcta 139 |||||||||||||||||||| Sbjct: 173802 ctcatccttattacctgcta 173821 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,505,636 Number of Sequences: 3902068 Number of extensions: 3505636 Number of successful extensions: 74925 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74861 Number of HSP's gapped (non-prelim): 64 length of query: 412 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 390 effective length of database: 17,147,199,772 effective search space: 6687407911080 effective search space used: 6687407911080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)