ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart25h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY623907.1| Oryza sativa (japonica cultivar-group) cultivar T... 52 0.001
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
3dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
4dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
5dbj|AK072958.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
6gb|AC183664.3| Pan troglodytes BAC clone CH251-645D10 from chrom... 40 5.5
7ref|XM_974659.1| PREDICTED: Mus musculus zinc finger protein 26,... 40 5.5
8ref|XM_974728.1| PREDICTED: Mus musculus zinc finger protein 26,... 40 5.5
9ref|XM_134736.6| PREDICTED: Mus musculus zinc finger protein 26,... 40 5.5
10ref|XM_977486.1| PREDICTED: Mus musculus zinc finger protein 26,... 40 5.5
11ref|XM_907466.2| PREDICTED: Mus musculus zinc finger protein 26,... 40 5.5
12emb|AL845294.3| Mouse DNA sequence from clone RP23-285N19 on chr... 40 5.5
13gb|AC079969.5| Homo sapiens chromosome 15, clone RP11-636P14, co... 40 5.5
14gb|AC058803.5| Homo sapiens chromosome 15, clone RP11-717I24, co... 40 5.5
15gb|AC012518.19| Homo sapiens 12 BAC RP11-512G13 (Roswell Park Ca... 40 5.5
16dbj|AK039143.1| Mus musculus adult male hypothalamus cDNA, RIKEN... 40 5.5
17gb|AC010843.10|AC010843 Drosophila melanogaster, chromosome X, r... 40 5.5
18dbj|AK082002.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 5.5
19gb|AC010995.11|AC010995 Drosophila melanogaster, chromosome X, r... 40 5.5
20gb|AC096591.1| Homo sapiens BAC clone RP11-768F19 from 2, comple... 40 5.5
21gb|AC083865.2|AC083865 Homo sapiens chromosome 7 clone RP11-605P... 40 5.5
22gb|AC114776.3| Homo sapiens BAC clone RP11-480O8 from 2, complet... 40 5.5
23emb|AL928854.6| Zebrafish DNA sequence from clone CH211-59D2, co... 40 5.5
24gb|AY955097.1| Aedes aegypti putative methoprene-tolerant protei... 40 5.5
25gb|AE003493.3| Drosophila melanogaster chromosome X, section 45 ... 40 5.5
26gb|AY902310.1| Aedes aegypti putative methoprene-tolerant mutant... 40 5.5
27emb|BX530024.6| Zebrafish DNA sequence from clone RP71-39B20, co... 40 5.5
28gb|AC105073.16| Mus musculus chromosome 1, clone RP23-288J11, co... 40 5.5

>gb|AY623907.1| Oryza sativa (japonica cultivar-group) cultivar Tainung 67
           phosphosulfolactate synthase-related protein (PSR) mRNA,
           complete cds
          Length = 909

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 362 aagccgcggaggcgctccaggttcatcacctcggagtg 399
           ||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 845 aagcctcggagacgctccaggttcatcacgtcggagtg 808



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                      
Query: 362      aagccgcggaggcgctccaggttcatcacctcggagtg 399
                ||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 28080513 aagcctcggagacgctccaggttcatcacgtcggagtg 28080550



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>dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0547F09
          Length = 140615

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                    
Query: 362    aagccgcggaggcgctccaggttcatcacctcggagtg 399
              ||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 125332 aagcctcggagacgctccaggttcatcacgtcggagtg 125369



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>dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0009H10
          Length = 175754

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 362   aagccgcggaggcgctccaggttcatcacctcggagtg 399
             ||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 11419 aagcctcggagacgctccaggttcatcacgtcggagtg 11456



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>dbj|AK072958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149H22, full
           insert sequence
          Length = 1287

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 362 aagccgcggaggcgctccaggttcatcacctcggagtg 399
           ||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 918 aagcctcggagacgctccaggttcatcacgtcggagtg 881



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>gb|AC183664.3| Pan troglodytes BAC clone CH251-645D10 from chromosome 12, complete
             sequence
          Length = 176676

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    catcacattcacacacattc 60
             ||||||||||||||||||||
Sbjct: 39694 catcacattcacacacattc 39675



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>ref|XM_974659.1| PREDICTED: Mus musculus zinc finger protein 26, transcript variant
           1 (Zfp26), mRNA
          Length = 1203

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 cacagcctcatccttattac 133
           ||||||||||||||||||||
Sbjct: 587 cacagcctcatccttattac 568



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>ref|XM_974728.1| PREDICTED: Mus musculus zinc finger protein 26, transcript variant
           3 (Zfp26), mRNA
          Length = 6966

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 cacagcctcatccttattac 133
           ||||||||||||||||||||
Sbjct: 587 cacagcctcatccttattac 568



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>ref|XM_134736.6| PREDICTED: Mus musculus zinc finger protein 26, transcript variant
           1 (Zfp26), mRNA
          Length = 1203

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 cacagcctcatccttattac 133
           ||||||||||||||||||||
Sbjct: 587 cacagcctcatccttattac 568



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>ref|XM_977486.1| PREDICTED: Mus musculus zinc finger protein 26, transcript variant
           3 (Zfp26), mRNA
          Length = 7167

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 cacagcctcatccttattac 133
           ||||||||||||||||||||
Sbjct: 587 cacagcctcatccttattac 568



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>ref|XM_907466.2| PREDICTED: Mus musculus zinc finger protein 26, transcript variant
           3 (Zfp26), mRNA
          Length = 7167

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 cacagcctcatccttattac 133
           ||||||||||||||||||||
Sbjct: 587 cacagcctcatccttattac 568



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>emb|AL845294.3| Mouse DNA sequence from clone RP23-285N19 on chromosome 4 Contains a
              ribosomal protein L9 (Rpl9) pseudogene, a cysteine-rich
              secretory protein 1 (Crisp1) pseudogene and a eukaryotic
              translation initiation factor 1A (Eif1a) pseudogene,
              complete sequence
          Length = 167418

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     tcatcacattcacacacatt 59
              ||||||||||||||||||||
Sbjct: 123009 tcatcacattcacacacatt 123028



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>gb|AC079969.5| Homo sapiens chromosome 15, clone RP11-636P14, complete sequence
          Length = 227506

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   ccctcagtacagttcacaca 224
             ||||||||||||||||||||
Sbjct: 65036 ccctcagtacagttcacaca 65055



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>gb|AC058803.5| Homo sapiens chromosome 15, clone RP11-717I24, complete sequence
          Length = 203493

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   ccctcagtacagttcacaca 224
             ||||||||||||||||||||
Sbjct: 78407 ccctcagtacagttcacaca 78388



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>gb|AC012518.19| Homo sapiens 12 BAC RP11-512G13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 106400

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    catcacattcacacacattc 60
             ||||||||||||||||||||
Sbjct: 16304 catcacattcacacacattc 16285



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>dbj|AK039143.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched
            library, clone:A230102C22 product:unclassifiable, full
            insert sequence
          Length = 1834

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 120  ctcatccttattacctgcta 139
            ||||||||||||||||||||
Sbjct: 1440 ctcatccttattacctgcta 1459



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>gb|AC010843.10|AC010843 Drosophila melanogaster, chromosome X, region 12A-12A, BAC clone
              BACR08A22, complete sequence
          Length = 170914

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     acattcacacacattcgaaa 64
              ||||||||||||||||||||
Sbjct: 162756 acattcacacacattcgaaa 162737



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>dbj|AK082002.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
           library, clone:C130093H07 product:zinc finger protein
           26, full insert sequence
          Length = 2590

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 cacagcctcatccttattac 133
           ||||||||||||||||||||
Sbjct: 421 cacagcctcatccttattac 402



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>gb|AC010995.11|AC010995 Drosophila melanogaster, chromosome X, region 12A-12A, BAC clone
             BACR30C16, complete sequence
          Length = 185810

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    acattcacacacattcgaaa 64
             ||||||||||||||||||||
Sbjct: 65094 acattcacacacattcgaaa 65075



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>gb|AC096591.1| Homo sapiens BAC clone RP11-768F19 from 2, complete sequence
          Length = 182435

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 230 tcccagtacagaaaactcagctcc 253
           ||||||||||||| ||||||||||
Sbjct: 748 tcccagtacagaagactcagctcc 725



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>gb|AC083865.2|AC083865 Homo sapiens chromosome 7 clone RP11-605P22, complete sequence
          Length = 218186

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    actcctcccagtacagaaaa 244
              ||||||||||||||||||||
Sbjct: 162084 actcctcccagtacagaaaa 162065



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>gb|AC114776.3| Homo sapiens BAC clone RP11-480O8 from 2, complete sequence
          Length = 169190

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 230    tcccagtacagaaaactcagctcc 253
              ||||||||||||| ||||||||||
Sbjct: 167938 tcccagtacagaagactcagctcc 167915



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>emb|AL928854.6| Zebrafish DNA sequence from clone CH211-59D2, complete sequence
          Length = 101762

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    catcacattcacacacattc 60
             ||||||||||||||||||||
Sbjct: 25615 catcacattcacacacattc 25596



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>gb|AY955097.1| Aedes aegypti putative methoprene-tolerant protein (Met) mRNA,
            complete cds
          Length = 3926

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 246  tcagctccatcaacacttcgctta 269
            ||||||||||||||||| ||||||
Sbjct: 3215 tcagctccatcaacactccgctta 3238



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>gb|AE003493.3| Drosophila melanogaster chromosome X, section 45 of 74 of the complete
             sequence
          Length = 307761

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    acattcacacacattcgaaa 64
             ||||||||||||||||||||
Sbjct: 17801 acattcacacacattcgaaa 17782



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>gb|AY902310.1| Aedes aegypti putative methoprene-tolerant mutant mRNA, complete cds
          Length = 3135

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 246  tcagctccatcaacacttcgctta 269
            ||||||||||||||||| ||||||
Sbjct: 2702 tcagctccatcaacactccgctta 2725



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>emb|BX530024.6| Zebrafish DNA sequence from clone RP71-39B20, complete sequence
          Length = 146464

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     atcatcacattcacacacat 58
              ||||||||||||||||||||
Sbjct: 110364 atcatcacattcacacacat 110345



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>gb|AC105073.16| Mus musculus chromosome 1, clone RP23-288J11, complete sequence
          Length = 210509

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    ctcatccttattacctgcta 139
              ||||||||||||||||||||
Sbjct: 173802 ctcatccttattacctgcta 173821


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,505,636
Number of Sequences: 3902068
Number of extensions: 3505636
Number of successful extensions: 74925
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74861
Number of HSP's gapped (non-prelim): 64
length of query: 412
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 390
effective length of database: 17,147,199,772
effective search space: 6687407911080
effective search space used: 6687407911080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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