Clone Name | rbart25h03 |
---|---|
Clone Library Name | barley_pub |
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 98.2 bits (243), Expect = 4e-21 Identities = 51/98 (52%), Positives = 57/98 (58%), Gaps = 7/98 (7%) Frame = -3 Query: 367 YAATYKLMSEAKKFGFGDPLRVCCGYGGGQYNFDKNIRCGDPVLEGK-------SCEDPS 209 Y+ Y L SE +K GF PL CCGYGG +YNF CGD V SC PS Sbjct: 283 YSVKYSLFSEPEKHGFEFPLITCCGYGG-KYNFSVTAPCGDTVTADDGTKIVVGSCACPS 341 Query: 208 KSVSWDGVHLTEAAYKFIFDQIVDGALSDPPVPLRGAC 95 V+WDG H TEAA ++ FDQI GA SDPPVPL AC Sbjct: 342 VRVNWDGAHYTEAANEYFFDQISTGAFSDPPVPLNMAC 379
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 77.4 bits (189), Expect = 8e-15 Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 7/85 (8%) Frame = -3 Query: 367 YAATYKLMSEAKKFGFGDPLRVCCGYGGGQYNFDKNIRCG-------DPVLEGKSCEDPS 209 Y+ ++L A+ GF L CCG+GG +YN++K I CG V GK C++P Sbjct: 281 YSLKHELFVHAQGHGFKGSLVSCCGHGG-KYNYNKGIGCGMKKIVKGKEVYIGKPCDEPD 339 Query: 208 KSVSWDGVHLTEAAYKFIFDQIVDG 134 K+V WDGVH T+AA KFIFD+I G Sbjct: 340 KAVVWDGVHFTQAANKFIFDKIAPG 364
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 33.1 bits (74), Expect = 0.17 Identities = 20/71 (28%), Positives = 29/71 (40%) Frame = -3 Query: 367 YAATYKLMSEAKKFGFGDPLRVCCGYGGGQYNFDKNIRCGDPVLEGKSCEDPSKSVSWDG 188 Y +++ +GF + + CC G C K C + S + WDG Sbjct: 456 YTIISQMLETPAAYGFEETKKPCCKTG----LLSAGALCKKST--SKICPNTSSYLFWDG 509 Query: 187 VHLTEAAYKFI 155 VH T+ AYK I Sbjct: 510 VHPTQRAYKTI 520
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 31.6 bits (70), Expect = 0.49 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Frame = -3 Query: 367 YAATYKLMSEAKKFGFGDPLRVCCGYG---GGQYNFDKNIRCGDPVLEGKSCEDPSKSVS 197 Y+ K++ + +GF + + CC G GG + ++ + K+ + S + Sbjct: 373 YSIFSKMLESPEDYGFEEIKKPCCKIGLTKGGVFCKERTL---------KNMSNASSYLF 423 Query: 196 WDGVHLTEAAYK 161 WDG+H ++ AY+ Sbjct: 424 WDGLHPSQRAYE 435
>MUCAP_PIG (P12021) Apomucin (Mucin core protein) (Fragment)| Length = 1150 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Frame = +3 Query: 63 NEHHAHCPLPWQAPR--KGTGGSERAPSTIWSKMNL*AASVKCTPSQLTLFDGSSQDFPS 236 NE+ CP P P G G E++P +W+ A KCT ++ D ++ PS Sbjct: 915 NENKTGCPAPLPPPPVCHGPLGEEKSPGDVWT-----ANCHKCTCTEAKTVDCKPKECPS 969
>EYA4_HUMAN (O95677) Eyes absent homolog 4 (EC 3.1.3.48)| Length = 639 Score = 29.6 bits (65), Expect = 1.9 Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 1/77 (1%) Frame = +3 Query: 15 LEDGCLEK*SYIQNLINEHHAHCPLPWQAPRKGTGGSERAPS-TIWSKMNL*AASVKCTP 191 L+ GCL SY P +Q P GS APS TI++ ++ Sbjct: 215 LQSGCL---SYSPGFSTPQPGQTPYSYQMP-----GSSFAPSSTIYANNSV--------- 257 Query: 192 SQLTLFDGSSQDFPSRT 242 S T F GS QD+PS T Sbjct: 258 SNSTNFSGSQQDYPSYT 274
>RIP_RAT (Q4G2Y1) RPA-interacting protein| Length = 219 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = +3 Query: 48 IQNLINEHHAHCPLPWQAPR-KGTGGSERAPSTIWS 152 ++ +NEH AHCP P TGG+E PS + S Sbjct: 176 LEGNVNEHSAHCP---HIPEFSVTGGTEEKPSLLMS 208
>TRSF_DROER (Q23935) Female-specific protein transformer| Length = 178 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = +3 Query: 222 QDFPSRTGSPHRMFLSKLYWPPPYPQHTRRGSPKPNFLAS 341 QDF +G R +L PPP+P R +P FL + Sbjct: 126 QDFYGMSGMQQRFGYQRLPHPPPFPPAPYRFRQRPPFLGA 165
>ADA29_HUMAN (Q9UKF5) ADAM 29 precursor (A disintegrin and metalloproteinase| domain 29) Length = 820 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 3/24 (12%) Frame = +3 Query: 63 NEHHAHCPLPWQAPR---KGTGGS 125 N+HH HC W P KG GGS Sbjct: 638 NKHHCHCNYLWDPPNCLIKGYGGS 661
>ADA25_MOUSE (Q9R159) ADAM 25 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 25) (Testase 2) Length = 760 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 3/24 (12%) Frame = +3 Query: 63 NEHHAHCPLPWQAP---RKGTGGS 125 N HH HC L W P + G GGS Sbjct: 660 NLHHCHCNLGWDPPHCLKSGLGGS 683
>ADA21_MOUSE (Q9JI76) ADAM 21 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 21) (ADAM 31) Length = 729 Score = 28.1 bits (61), Expect = 5.5 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 3/24 (12%) Frame = +3 Query: 63 NEHHAHCPLPWQAP---RKGTGGS 125 N+HH HC W P +G GGS Sbjct: 651 NKHHCHCDYGWSPPFCLHRGYGGS 674
>ROUGH_DROME (P10181) Homeobox protein rough| Length = 350 Score = 28.1 bits (61), Expect = 5.5 Identities = 20/72 (27%), Positives = 28/72 (38%) Frame = +3 Query: 72 HAHCPLPWQAPRKGTGGSERAPSTIWSKMNL*AASVKCTPSQLTLFDGSSQDFPSRTGSP 251 HAH P P P GGS +P S S+ P+ F G ++D+P Sbjct: 67 HAHKPPPCDTPYHSDGGSVSSPDISISDER---TSLAAYPAY--DFYGHAKDYPQHPSQQ 121 Query: 252 HRMFLSKLYWPP 287 H+ + PP Sbjct: 122 HQQHHHHHHHPP 133
>STK19_HUMAN (P49842) Serine/threonine-protein kinase 19 (EC 2.7.11.1) (Protein| RP1) (Protein G11) Length = 368 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = -2 Query: 149 PDRGRRSLRPSGAFAWGLPGQ 87 P RGRR RP G A G PG+ Sbjct: 59 PIRGRRGARPGGGDAGGTPGE 79
>CLPX_SYNY3 (Q55510) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 445 Score = 27.7 bits (60), Expect = 7.1 Identities = 19/64 (29%), Positives = 30/64 (46%) Frame = -3 Query: 271 FDKNIRCGDPVLEGKSCEDPSKSVSWDGVHLTEAAYKFIFDQIVDGALSDPPVPLRGACQ 92 +D +++C GKS E K ++ GV++ + + D I+D L D P G Sbjct: 4 YDSHLKCS---FCGKSQEQVRKLIAGPGVYICDECVELCND-ILDEELLDVPPASTGERD 59 Query: 91 GKGQ 80 G GQ Sbjct: 60 GTGQ 63
>ADA21_HUMAN (Q9UKJ8) ADAM 21 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 21) Length = 722 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 3/24 (12%) Frame = +3 Query: 63 NEHHAHCPLPWQAP---RKGTGGS 125 N+HH HC W P +G GGS Sbjct: 647 NKHHCHCGYGWSPPYCQHRGYGGS 670
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/32 (46%), Positives = 16/32 (50%) Frame = +3 Query: 216 SSQDFPSRTGSPHRMFLSKLYWPPPYPQHTRR 311 +SQD SR PH PPPYP TRR Sbjct: 928 ASQDRGSRVPHPHPH-------PPPYPHFTRR 952
>LRC14_HUMAN (Q15048) Leucine-rich repeat-containing protein 14| Length = 493 Score = 27.3 bits (59), Expect = 9.3 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -3 Query: 361 ATYKLMSEAKKFGFGDPLRVCC 296 A+Y + EA + G PLR+CC Sbjct: 176 ASYAFLREALRSSVGSPLRLCC 197
>RBFA_CAUCR (Q9AC30) Ribosome-binding factor A| Length = 149 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = +2 Query: 89 ALAGPTQRHRRVGESAVHDLVE 154 AL GP+QR R GE H LVE Sbjct: 11 ALTGPSQRQLRAGELIRHALVE 32
>RIP_HUMAN (Q86UA6) RPA-interacting protein (hRIP)| Length = 219 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = +3 Query: 48 IQNLINEHHAHCPLPWQAPR-KGTGGSERAPSTIWS 152 ++ INEH AHCP P TGG+E S + S Sbjct: 176 LEGSINEHSAHCP---HTPEFSVTGGTEEKSSLLMS 208
>PIGQ_HUMAN (Q9BRB3) Phosphatidylinositol N-acetylglucosaminyltransferase| subunit Q (EC 2.4.1.198) (Phosphatidylinositol-glycan biosynthesis, class Q protein) (PIG-Q) (N-acetylglucosamyl transferase component GPI1) Length = 759 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -3 Query: 316 DPLRVCCGYGGGQYNFDKNIRC 251 DPL CCG+ GG+++ N RC Sbjct: 639 DPLPTCCGHHGGEHS---NPRC 657
>CAPP_CORGL (P12880) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 918 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = +3 Query: 180 KCTPSQLTLFDGSSQDFPSRTGSPHR 257 K TP L L D D PSR P+R Sbjct: 302 KVTPQLLALADAGHNDVPSRVDEPYR 327
>TRUB_PROMM (P59881) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 320 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = -2 Query: 191 WGALDRGSLQIHLRPDRGRRSLRPSGAFAWGLPGQRA 81 W L+ ++ +L P RGR RP A + G+RA Sbjct: 93 WPELNTAEIEAYLEPFRGRIQQRPPQVSAVHVQGERA 129
>CRYD_ORYSA (Q651U1) Cryptochrome DASH, chloroplast/mitochondrial precursor| Length = 582 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/34 (35%), Positives = 16/34 (47%) Frame = -1 Query: 174 RQLTNSSSTRSWTALSPTLRCLCVGPARAKGNAH 73 R L N + R+W A L CV P + G+ H Sbjct: 95 RVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTH 128
>ATP5S_BOVIN (P22027) ATP synthase subunit s, mitochondrial precursor (ATP| synthase coupling factor B) (Mitochondrial ATP synthase regulatory component factor B) Length = 200 Score = 27.3 bits (59), Expect = 9.3 Identities = 10/16 (62%), Positives = 14/16 (87%) Frame = +3 Query: 12 YLEDGCLEK*SYIQNL 59 Y+EDGCLE+ S ++NL Sbjct: 121 YIEDGCLERLSQLENL 136
>Y4VI_RHISN (Q53217) Putative short-chain type dehydrogenase/reductase y4vI (EC| 1.-.-.-) Length = 548 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 218 GPIEERELGWGALDRGSLQIHLRPDR 141 G I RE GWG+ G++ +RP R Sbjct: 512 GLISSREAGWGSEVDGAISAEMRPQR 537
>GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX)| (Endo-1,4-beta-glucanase) (Cellulase) (Fragment) Length = 224 Score = 27.3 bits (59), Expect = 9.3 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -3 Query: 217 DPSKSVSWDGVHLTEAAY 164 D + +SWDG+HL+E Y Sbjct: 109 DRNTDISWDGLHLSEIGY 126
>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)| Length = 1285 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/31 (35%), Positives = 15/31 (48%) Frame = +3 Query: 219 SQDFPSRTGSPHRMFLSKLYWPPPYPQHTRR 311 + DF GS R+ + WP P P H+ R Sbjct: 501 TSDFNPNAGSDQRVVNGGVPWPSPCPSHSSR 531 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,740,904 Number of Sequences: 219361 Number of extensions: 1234562 Number of successful extensions: 3351 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3225 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3343 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)