ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart25h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 98 4e-21
2FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 77 8e-15
3APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 33 0.17
4APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 32 0.49
5MUCAP_PIG (P12021) Apomucin (Mucin core protein) (Fragment) 30 1.9
6EYA4_HUMAN (O95677) Eyes absent homolog 4 (EC 3.1.3.48) 30 1.9
7RIP_RAT (Q4G2Y1) RPA-interacting protein 29 2.4
8TRSF_DROER (Q23935) Female-specific protein transformer 29 3.2
9ADA29_HUMAN (Q9UKF5) ADAM 29 precursor (A disintegrin and metall... 28 4.2
10ADA25_MOUSE (Q9R159) ADAM 25 precursor (EC 3.4.24.-) (A disinteg... 28 4.2
11ADA21_MOUSE (Q9JI76) ADAM 21 precursor (EC 3.4.24.-) (A disinteg... 28 5.5
12ROUGH_DROME (P10181) Homeobox protein rough 28 5.5
13STK19_HUMAN (P49842) Serine/threonine-protein kinase 19 (EC 2.7.... 28 5.5
14CLPX_SYNY3 (Q55510) ATP-dependent Clp protease ATP-binding subun... 28 7.1
15ADA21_HUMAN (Q9UKJ8) ADAM 21 precursor (EC 3.4.24.-) (A disinteg... 28 7.1
16SAFB2_HUMAN (Q14151) Scaffold attachment factor B2 27 9.3
17LRC14_HUMAN (Q15048) Leucine-rich repeat-containing protein 14 27 9.3
18RBFA_CAUCR (Q9AC30) Ribosome-binding factor A 27 9.3
19RIP_HUMAN (Q86UA6) RPA-interacting protein (hRIP) 27 9.3
20PIGQ_HUMAN (Q9BRB3) Phosphatidylinositol N-acetylglucosaminyltra... 27 9.3
21CAPP_CORGL (P12880) Phosphoenolpyruvate carboxylase (EC 4.1.1.31... 27 9.3
22TRUB_PROMM (P59881) tRNA pseudouridine synthase B (EC 5.4.99.-) ... 27 9.3
23CRYD_ORYSA (Q651U1) Cryptochrome DASH, chloroplast/mitochondrial... 27 9.3
24ATP5S_BOVIN (P22027) ATP synthase subunit s, mitochondrial precu... 27 9.3
25Y4VI_RHISN (Q53217) Putative short-chain type dehydrogenase/redu... 27 9.3
26GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX) ... 27 9.3
27ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 prot... 27 9.3

>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 98.2 bits (243), Expect = 4e-21
 Identities = 51/98 (52%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
 Frame = -3

Query: 367 YAATYKLMSEAKKFGFGDPLRVCCGYGGGQYNFDKNIRCGDPVLEGK-------SCEDPS 209
           Y+  Y L SE +K GF  PL  CCGYGG +YNF     CGD V           SC  PS
Sbjct: 283 YSVKYSLFSEPEKHGFEFPLITCCGYGG-KYNFSVTAPCGDTVTADDGTKIVVGSCACPS 341

Query: 208 KSVSWDGVHLTEAAYKFIFDQIVDGALSDPPVPLRGAC 95
             V+WDG H TEAA ++ FDQI  GA SDPPVPL  AC
Sbjct: 342 VRVNWDGAHYTEAANEYFFDQISTGAFSDPPVPLNMAC 379



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>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 77.4 bits (189), Expect = 8e-15
 Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 7/85 (8%)
 Frame = -3

Query: 367 YAATYKLMSEAKKFGFGDPLRVCCGYGGGQYNFDKNIRCG-------DPVLEGKSCEDPS 209
           Y+  ++L   A+  GF   L  CCG+GG +YN++K I CG         V  GK C++P 
Sbjct: 281 YSLKHELFVHAQGHGFKGSLVSCCGHGG-KYNYNKGIGCGMKKIVKGKEVYIGKPCDEPD 339

Query: 208 KSVSWDGVHLTEAAYKFIFDQIVDG 134
           K+V WDGVH T+AA KFIFD+I  G
Sbjct: 340 KAVVWDGVHFTQAANKFIFDKIAPG 364



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 20/71 (28%), Positives = 29/71 (40%)
 Frame = -3

Query: 367 YAATYKLMSEAKKFGFGDPLRVCCGYGGGQYNFDKNIRCGDPVLEGKSCEDPSKSVSWDG 188
           Y    +++     +GF +  + CC  G           C       K C + S  + WDG
Sbjct: 456 YTIISQMLETPAAYGFEETKKPCCKTG----LLSAGALCKKST--SKICPNTSSYLFWDG 509

Query: 187 VHLTEAAYKFI 155
           VH T+ AYK I
Sbjct: 510 VHPTQRAYKTI 520



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>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = -3

Query: 367 YAATYKLMSEAKKFGFGDPLRVCCGYG---GGQYNFDKNIRCGDPVLEGKSCEDPSKSVS 197
           Y+   K++   + +GF +  + CC  G   GG +  ++ +         K+  + S  + 
Sbjct: 373 YSIFSKMLESPEDYGFEEIKKPCCKIGLTKGGVFCKERTL---------KNMSNASSYLF 423

Query: 196 WDGVHLTEAAYK 161
           WDG+H ++ AY+
Sbjct: 424 WDGLHPSQRAYE 435



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>MUCAP_PIG (P12021) Apomucin (Mucin core protein) (Fragment)|
          Length = 1150

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 63   NEHHAHCPLPWQAPR--KGTGGSERAPSTIWSKMNL*AASVKCTPSQLTLFDGSSQDFPS 236
            NE+   CP P   P    G  G E++P  +W+     A   KCT ++    D   ++ PS
Sbjct: 915  NENKTGCPAPLPPPPVCHGPLGEEKSPGDVWT-----ANCHKCTCTEAKTVDCKPKECPS 969



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>EYA4_HUMAN (O95677) Eyes absent homolog 4 (EC 3.1.3.48)|
          Length = 639

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +3

Query: 15  LEDGCLEK*SYIQNLINEHHAHCPLPWQAPRKGTGGSERAPS-TIWSKMNL*AASVKCTP 191
           L+ GCL   SY            P  +Q P     GS  APS TI++  ++         
Sbjct: 215 LQSGCL---SYSPGFSTPQPGQTPYSYQMP-----GSSFAPSSTIYANNSV--------- 257

Query: 192 SQLTLFDGSSQDFPSRT 242
           S  T F GS QD+PS T
Sbjct: 258 SNSTNFSGSQQDYPSYT 274



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>RIP_RAT (Q4G2Y1) RPA-interacting protein|
          Length = 219

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 48  IQNLINEHHAHCPLPWQAPR-KGTGGSERAPSTIWS 152
           ++  +NEH AHCP     P    TGG+E  PS + S
Sbjct: 176 LEGNVNEHSAHCP---HIPEFSVTGGTEEKPSLLMS 208



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>TRSF_DROER (Q23935) Female-specific protein transformer|
          Length = 178

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 222 QDFPSRTGSPHRMFLSKLYWPPPYPQHTRRGSPKPNFLAS 341
           QDF   +G   R    +L  PPP+P    R   +P FL +
Sbjct: 126 QDFYGMSGMQQRFGYQRLPHPPPFPPAPYRFRQRPPFLGA 165



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>ADA29_HUMAN (Q9UKF5) ADAM 29 precursor (A disintegrin and metalloproteinase|
           domain 29)
          Length = 820

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
 Frame = +3

Query: 63  NEHHAHCPLPWQAPR---KGTGGS 125
           N+HH HC   W  P    KG GGS
Sbjct: 638 NKHHCHCNYLWDPPNCLIKGYGGS 661



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>ADA25_MOUSE (Q9R159) ADAM 25 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 25) (Testase 2)
          Length = 760

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
 Frame = +3

Query: 63  NEHHAHCPLPWQAP---RKGTGGS 125
           N HH HC L W  P   + G GGS
Sbjct: 660 NLHHCHCNLGWDPPHCLKSGLGGS 683



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>ADA21_MOUSE (Q9JI76) ADAM 21 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 21) (ADAM 31)
          Length = 729

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
 Frame = +3

Query: 63  NEHHAHCPLPWQAP---RKGTGGS 125
           N+HH HC   W  P    +G GGS
Sbjct: 651 NKHHCHCDYGWSPPFCLHRGYGGS 674



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>ROUGH_DROME (P10181) Homeobox protein rough|
          Length = 350

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 20/72 (27%), Positives = 28/72 (38%)
 Frame = +3

Query: 72  HAHCPLPWQAPRKGTGGSERAPSTIWSKMNL*AASVKCTPSQLTLFDGSSQDFPSRTGSP 251
           HAH P P   P    GGS  +P    S       S+   P+    F G ++D+P      
Sbjct: 67  HAHKPPPCDTPYHSDGGSVSSPDISISDER---TSLAAYPAY--DFYGHAKDYPQHPSQQ 121

Query: 252 HRMFLSKLYWPP 287
           H+      + PP
Sbjct: 122 HQQHHHHHHHPP 133



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>STK19_HUMAN (P49842) Serine/threonine-protein kinase 19 (EC 2.7.11.1) (Protein|
           RP1) (Protein G11)
          Length = 368

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 149 PDRGRRSLRPSGAFAWGLPGQ 87
           P RGRR  RP G  A G PG+
Sbjct: 59  PIRGRRGARPGGGDAGGTPGE 79



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>CLPX_SYNY3 (Q55510) ATP-dependent Clp protease ATP-binding subunit clpX|
          Length = 445

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -3

Query: 271 FDKNIRCGDPVLEGKSCEDPSKSVSWDGVHLTEAAYKFIFDQIVDGALSDPPVPLRGACQ 92
           +D +++C      GKS E   K ++  GV++ +   +   D I+D  L D P    G   
Sbjct: 4   YDSHLKCS---FCGKSQEQVRKLIAGPGVYICDECVELCND-ILDEELLDVPPASTGERD 59

Query: 91  GKGQ 80
           G GQ
Sbjct: 60  GTGQ 63



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>ADA21_HUMAN (Q9UKJ8) ADAM 21 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 21)
          Length = 722

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
 Frame = +3

Query: 63  NEHHAHCPLPWQAP---RKGTGGS 125
           N+HH HC   W  P    +G GGS
Sbjct: 647 NKHHCHCGYGWSPPYCQHRGYGGS 670



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>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2|
          Length = 953

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +3

Query: 216  SSQDFPSRTGSPHRMFLSKLYWPPPYPQHTRR 311
            +SQD  SR   PH         PPPYP  TRR
Sbjct: 928  ASQDRGSRVPHPHPH-------PPPYPHFTRR 952



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>LRC14_HUMAN (Q15048) Leucine-rich repeat-containing protein 14|
          Length = 493

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 361 ATYKLMSEAKKFGFGDPLRVCC 296
           A+Y  + EA +   G PLR+CC
Sbjct: 176 ASYAFLREALRSSVGSPLRLCC 197



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>RBFA_CAUCR (Q9AC30) Ribosome-binding factor A|
          Length = 149

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 89  ALAGPTQRHRRVGESAVHDLVE 154
           AL GP+QR  R GE   H LVE
Sbjct: 11  ALTGPSQRQLRAGELIRHALVE 32



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>RIP_HUMAN (Q86UA6) RPA-interacting protein (hRIP)|
          Length = 219

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 48  IQNLINEHHAHCPLPWQAPR-KGTGGSERAPSTIWS 152
           ++  INEH AHCP     P    TGG+E   S + S
Sbjct: 176 LEGSINEHSAHCP---HTPEFSVTGGTEEKSSLLMS 208



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>PIGQ_HUMAN (Q9BRB3) Phosphatidylinositol N-acetylglucosaminyltransferase|
           subunit Q (EC 2.4.1.198) (Phosphatidylinositol-glycan
           biosynthesis, class Q protein) (PIG-Q)
           (N-acetylglucosamyl transferase component GPI1)
          Length = 759

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 316 DPLRVCCGYGGGQYNFDKNIRC 251
           DPL  CCG+ GG+++   N RC
Sbjct: 639 DPLPTCCGHHGGEHS---NPRC 657



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>CAPP_CORGL (P12880) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 918

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 180 KCTPSQLTLFDGSSQDFPSRTGSPHR 257
           K TP  L L D    D PSR   P+R
Sbjct: 302 KVTPQLLALADAGHNDVPSRVDEPYR 327



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>TRUB_PROMM (P59881) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 320

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 191 WGALDRGSLQIHLRPDRGRRSLRPSGAFAWGLPGQRA 81
           W  L+   ++ +L P RGR   RP    A  + G+RA
Sbjct: 93  WPELNTAEIEAYLEPFRGRIQQRPPQVSAVHVQGERA 129



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>CRYD_ORYSA (Q651U1) Cryptochrome DASH, chloroplast/mitochondrial precursor|
          Length = 582

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 174 RQLTNSSSTRSWTALSPTLRCLCVGPARAKGNAH 73
           R L N +  R+W A    L   CV P  + G+ H
Sbjct: 95  RVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTH 128



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>ATP5S_BOVIN (P22027) ATP synthase subunit s, mitochondrial precursor (ATP|
           synthase coupling factor B) (Mitochondrial ATP synthase
           regulatory component factor B)
          Length = 200

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 12  YLEDGCLEK*SYIQNL 59
           Y+EDGCLE+ S ++NL
Sbjct: 121 YIEDGCLERLSQLENL 136



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>Y4VI_RHISN (Q53217) Putative short-chain type dehydrogenase/reductase y4vI (EC|
           1.-.-.-)
          Length = 548

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 218 GPIEERELGWGALDRGSLQIHLRPDR 141
           G I  RE GWG+   G++   +RP R
Sbjct: 512 GLISSREAGWGSEVDGAISAEMRPQR 537



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>GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX)|
           (Endo-1,4-beta-glucanase) (Cellulase) (Fragment)
          Length = 224

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 217 DPSKSVSWDGVHLTEAAY 164
           D +  +SWDG+HL+E  Y
Sbjct: 109 DRNTDISWDGLHLSEIGY 126



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>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)|
          Length = 1285

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 219 SQDFPSRTGSPHRMFLSKLYWPPPYPQHTRR 311
           + DF    GS  R+    + WP P P H+ R
Sbjct: 501 TSDFNPNAGSDQRVVNGGVPWPSPCPSHSSR 531


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,740,904
Number of Sequences: 219361
Number of extensions: 1234562
Number of successful extensions: 3351
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 3225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3343
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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