ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart25h03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478920.1| Oryza sativa (japonica cultivar-group), mRNA 80 6e-12
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 80 6e-12
3dbj|AP005437.3| Oryza sativa (japonica cultivar-group) genomic D... 80 6e-12
4dbj|AK071404.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 6e-12
5dbj|AB093208.1| Zea mays ache mRNA for hypothetical protein, com... 76 9e-11
6ref|XM_478921.1| Oryza sativa (japonica cultivar-group), mRNA 56 8e-05
7ref|XM_478922.1| Oryza sativa (japonica cultivar-group), mRNA 56 8e-05
8dbj|AK099293.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 8e-05
9dbj|AK073754.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 8e-05
10dbj|AK060131.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 8e-05
11ref|NM_190605.1| Oryza sativa (japonica cultivar-group), predic... 40 4.9
12gb|BC064194.1| Xenopus tropicalis 2-4-dienoyl-Coenzyme A reducta... 40 4.9
13emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, ... 40 4.9
14emb|AL021710.1|ATF28J12 Arabidopsis thaliana DNA chromosome 4, B... 40 4.9
15gb|AC149152.3| Xenopus tropicalis clone ISB-217F3, complete sequ... 40 4.9
16dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
17dbj|AP004127.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
18emb|BX649232.1| Mouse DNA sequence from clone RP23-271J11 on chr... 40 4.9
19dbj|AB071333.1| Oryza sativa (japonica cultivar-group) gene for ... 40 4.9
20dbj|AB071332.1| Oryza sativa (indica cultivar-group) gene for qS... 40 4.9
21dbj|AB071331.1| Oryza sativa (japonica cultivar-group) mRNA for ... 40 4.9
22dbj|AB071330.1| Oryza sativa (indica cultivar-group) mRNA for qS... 40 4.9 
>ref|XM_478920.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1440

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                    
Query: 249  ccgcaccggatgttcttgtcgaagttgtactggccgccgccgtacccgcaacacac 304
            ||||||||||||| | ||||||||||||||| |||||||||||||||||| |||||
Sbjct: 1081 ccgcaccggatgtccctgtcgaagttgtactcgccgccgccgtacccgcagcacac 1026



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 102/123 (82%)
 Strand = Plus / Minus

                                                                        
Query: 111  ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagct 170
            |||||||| |||||||||||   |||| | |||||| | ||||||| |||  |||  || 
Sbjct: 1240 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 1181

                                                                        
Query: 171  gcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagacttc 230
            ||||| || ||||||||||| ||||||||||||||| |||| ||||| ||||| ||||||
Sbjct: 1180 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtcgtcgcacgacttc 1121

               
Query: 231  ccc 233
            |||
Sbjct: 1120 ccc 1118
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                        
Query: 249      ccgcaccggatgttcttgtcgaagttgtactggccgccgccgtacccgcaacacac 304
                ||||||||||||| | ||||||||||||||| |||||||||||||||||| |||||
Sbjct: 23761001 ccgcaccggatgtccctgtcgaagttgtactcgccgccgccgtacccgcagcacac 23761056



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 102/123 (82%)
 Strand = Plus / Plus

                                                                            
Query: 111      ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagct 170
                |||||||| |||||||||||   |||| | |||||| | ||||||| |||  |||  || 
Sbjct: 23760842 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 23760901

                                                                            
Query: 171      gcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagacttc 230
                ||||| || ||||||||||| ||||||||||||||| |||| ||||| ||||| ||||||
Sbjct: 23760902 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtcgtcgcacgacttc 23760961

                   
Query: 231      ccc 233
                |||
Sbjct: 23760962 ccc 23760964



 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 100/124 (80%)
 Strand = Plus / Plus

                                                                            
Query: 110      aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 169
                ||||||||| |||||||||||   |||| |  ||||||||||||| | ||| ||||  ||
Sbjct: 23767024 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 23767083

                                                                            
Query: 170      tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 229
                 ||||| || |||||||| || ||||||||||| | ||||   ||||| ||||| |||||
Sbjct: 23767084 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 23767143

                    
Query: 230      cccc 233
                ||||
Sbjct: 23767144 cccc 23767147
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>dbj|AP005437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1113_E01
          Length = 73706

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                     
Query: 249   ccgcaccggatgttcttgtcgaagttgtactggccgccgccgtacccgcaacacac 304
             ||||||||||||| | ||||||||||||||| |||||||||||||||||| |||||
Sbjct: 15931 ccgcaccggatgtccctgtcgaagttgtactcgccgccgccgtacccgcagcacac 15986



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 102/123 (82%)
 Strand = Plus / Plus

                                                                         
Query: 111   ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagct 170
             |||||||| |||||||||||   |||| | |||||| | ||||||| |||  |||  || 
Sbjct: 15772 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 15831

                                                                         
Query: 171   gcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagacttc 230
             ||||| || ||||||||||| ||||||||||||||| |||| ||||| ||||| ||||||
Sbjct: 15832 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtcgtcgcacgacttc 15891

                
Query: 231   ccc 233
             |||
Sbjct: 15892 ccc 15894



 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 100/124 (80%)
 Strand = Plus / Plus

                                                                         
Query: 110   aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 169
             ||||||||| |||||||||||   |||| |  ||||||||||||| | ||| ||||  ||
Sbjct: 21954 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 22013

                                                                         
Query: 170   tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 229
              ||||| || |||||||| || ||||||||||| | ||||   ||||| ||||| |||||
Sbjct: 22014 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 22073

                 
Query: 230   cccc 233
             ||||
Sbjct: 22074 cccc 22077
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>dbj|AK071404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092E11, full
            insert sequence
          Length = 1439

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                    
Query: 249  ccgcaccggatgttcttgtcgaagttgtactggccgccgccgtacccgcaacacac 304
            ||||||||||||| | ||||||||||||||| |||||||||||||||||| |||||
Sbjct: 1080 ccgcaccggatgtccctgtcgaagttgtactcgccgccgccgtacccgcagcacac 1025



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 102/123 (82%)
 Strand = Plus / Minus

                                                                        
Query: 111  ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagct 170
            |||||||| |||||||||||   |||| | |||||| | ||||||| |||  |||  || 
Sbjct: 1239 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 1180

                                                                        
Query: 171  gcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagacttc 230
            ||||| || ||||||||||| ||||||||||||||| |||| ||||| ||||| ||||||
Sbjct: 1179 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtcgtcgcacgacttc 1120

               
Query: 231  ccc 233
            |||
Sbjct: 1119 ccc 1117
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>dbj|AB093208.1| Zea mays ache mRNA for hypothetical protein, complete cds
          Length = 1471

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 95/114 (83%)
 Strand = Plus / Minus

                                                                        
Query: 120  gggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagctgcctctgtc 179
            ||||| ||||| |||||| | |||||||||||||| | ||| ||||  || ||||| || 
Sbjct: 1227 gggtccgagagcgcgccggcgacgatctggtcgaacacgaacttgttggcagcctcggtg 1168

                                                                  
Query: 180  aagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagacttcccc 233
            |||||||| || ||||||||||| ||||| || |||| |||||| |||||||||
Sbjct: 1167 aagtgcacgccgtcccagctcaccctcttggaggggttctcgcacgacttcccc 1114



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 270  aagttgtactggccgccgccgtacccgca 298
            ||||||||| |||||||||||||||||||
Sbjct: 1056 aagttgtaccggccgccgccgtacccgca 1028
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>ref|XM_478921.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1757

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 100/124 (80%)
 Strand = Plus / Minus

                                                                        
Query: 110  aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 169
            ||||||||| |||||||||||   |||| |  ||||||||||||| | ||| ||||  ||
Sbjct: 1547 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 1488

                                                                        
Query: 170  tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 229
             ||||| || |||||||| || ||||||||||| | ||||   ||||| ||||| |||||
Sbjct: 1487 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 1428

                
Query: 230  cccc 233
            ||||
Sbjct: 1427 cccc 1424
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>ref|XM_478922.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1115

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 100/124 (80%)
 Strand = Plus / Minus

                                                                       
Query: 110 aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 169
           ||||||||| |||||||||||   |||| |  ||||||||||||| | ||| ||||  ||
Sbjct: 896 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 837

                                                                       
Query: 170 tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 229
            ||||| || |||||||| || ||||||||||| | ||||   ||||| ||||| |||||
Sbjct: 836 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 777

               
Query: 230 cccc 233
           ||||
Sbjct: 776 cccc 773
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>dbj|AK099293.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135D02, full
           insert sequence
          Length = 1126

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 100/124 (80%)
 Strand = Plus / Minus

                                                                       
Query: 110 aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 169
           ||||||||| |||||||||||   |||| |  ||||||||||||| | ||| ||||  ||
Sbjct: 916 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 857

                                                                       
Query: 170 tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 229
            ||||| || |||||||| || ||||||||||| | ||||   ||||| ||||| |||||
Sbjct: 856 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 797

               
Query: 230 cccc 233
           ||||
Sbjct: 796 cccc 793
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>dbj|AK073754.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067M09, full
            insert sequence
          Length = 1757

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 100/124 (80%)
 Strand = Plus / Minus

                                                                        
Query: 110  aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 169
            ||||||||| |||||||||||   |||| |  ||||||||||||| | ||| ||||  ||
Sbjct: 1547 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 1488

                                                                        
Query: 170  tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 229
             ||||| || |||||||| || ||||||||||| | ||||   ||||| ||||| |||||
Sbjct: 1487 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 1428

                
Query: 230  cccc 233
            ||||
Sbjct: 1427 cccc 1424
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>dbj|AK060131.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B10, full
           insert sequence
          Length = 1117

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 100/124 (80%)
 Strand = Plus / Minus

                                                                       
Query: 110 aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 169
           ||||||||| |||||||||||   |||| |  ||||||||||||| | ||| ||||  ||
Sbjct: 898 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 839

                                                                       
Query: 170 tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 229
            ||||| || |||||||| || ||||||||||| | ||||   ||||| ||||| |||||
Sbjct: 838 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 779

               
Query: 230 cccc 233
           ||||
Sbjct: 778 cccc 775
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>ref|NM_190605.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1839

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 ctggccgccgccgtacccgc 297
           ||||||||||||||||||||
Sbjct: 42  ctggccgccgccgtacccgc 23
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>gb|BC064194.1| Xenopus tropicalis 2-4-dienoyl-Coenzyme A reductase 2, peroxisomal,
            mRNA (cDNA clone IMAGE:5307739), partial cds
          Length = 1322

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 78   cattgccctttgccctggca 97
            ||||||||||||||||||||
Sbjct: 1183 cattgccctttgccctggca 1164
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>emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49
          Length = 199075

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 31   tggaaaaataatcctacatt 50
            ||||||||||||||||||||
Sbjct: 9283 tggaaaaataatcctacatt 9264
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>emb|AL021710.1|ATF28J12 Arabidopsis thaliana DNA chromosome 4, BAC clone F28J12 (ESSAII
             project)
          Length = 110102

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    tggaaaaataatcctacatt 50
             ||||||||||||||||||||
Sbjct: 90461 tggaaaaataatcctacatt 90442
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>gb|AC149152.3| Xenopus tropicalis clone ISB-217F3, complete sequence
          Length = 53218

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    cattgccctttgccctggca 97
             ||||||||||||||||||||
Sbjct: 16968 cattgccctttgccctggca 16987
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 278      ctggccgccgccgtacccgc 297
                ||||||||||||||||||||
Sbjct: 36442720 ctggccgccgccgtacccgc 36442739
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>dbj|AP004127.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0005H10
          Length = 142885

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   ctggccgccgccgtacccgc 297
             ||||||||||||||||||||
Sbjct: 94559 ctggccgccgccgtacccgc 94578
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>emb|BX649232.1| Mouse DNA sequence from clone RP23-271J11 on chromosome 2, complete
            sequence
          Length = 71295

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 164  gtaagctgcctctgtcaagt 183
            ||||||||||||||||||||
Sbjct: 8565 gtaagctgcctctgtcaagt 8584
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>dbj|AB071333.1| Oryza sativa (japonica cultivar-group) gene for qSH-1, complete cds
          Length = 4496

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 ctggccgccgccgtacccgc 297
           ||||||||||||||||||||
Sbjct: 491 ctggccgccgccgtacccgc 472
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>dbj|AB071332.1| Oryza sativa (indica cultivar-group) gene for qSH-1, complete cds
          Length = 4486

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 ctggccgccgccgtacccgc 297
           ||||||||||||||||||||
Sbjct: 491 ctggccgccgccgtacccgc 472
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>dbj|AB071331.1| Oryza sativa (japonica cultivar-group) mRNA for qSH-1, complete cds
          Length = 2442

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 ctggccgccgccgtacccgc 297
           ||||||||||||||||||||
Sbjct: 491 ctggccgccgccgtacccgc 472
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>dbj|AB071330.1| Oryza sativa (indica cultivar-group) mRNA for qSH-1, complete cds
          Length = 2450

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 ctggccgccgccgtacccgc 297
           ||||||||||||||||||||
Sbjct: 491 ctggccgccgccgtacccgc 472


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,839,396
Number of Sequences: 3902068
Number of extensions: 2839396
Number of successful extensions: 49457
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49366
Number of HSP's gapped (non-prelim): 80
length of query: 369
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 347
effective length of database: 17,147,199,772
effective search space: 5950078320884
effective search space used: 5950078320884
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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