ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart25h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB086416.1| Hordeum vulgare mRNA for O-methyltransferase, co... 123 3e-25
2gb|AF033539.1|AF033539 Lolium perenne caffeic acid O-methyltrans... 101 1e-18
3ref|XM_480185.1| Oryza sativa (japonica cultivar-group), mRNA 54 3e-04
4dbj|AK061859.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
6gb|DQ288259.1| Oryza sativa (japonica cultivar-group) O-methyltr... 54 3e-04
7dbj|AB122056.1| Oryza sativa (japonica cultivar-group) COMT mRNA... 54 3e-04
8dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
9dbj|AK064768.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
10gb|AF153825.1|AF153825 Festuca arundinacea comt1c caffeic acid O... 48 0.016
11gb|AF153823.1|AF153823 Festuca arundinacea comt1a caffeic acid O... 46 0.063
12gb|AC079258.4| Homo sapiens BAC clone RP11-410J22 from 2, comple... 46 0.063
13gb|AF033538.1|AF033538 Lolium perenne caffeic acid O-methyltrans... 46 0.063
14emb|BX037446.1|CNS09122 Single read from an extremity of a full-... 42 0.99
15gb|AC092868.2| Homo sapiens chromosome 15 clone RP11-356M20 map ... 42 0.99
16gb|AC099022.1| Drosophila melanogaster, chromosome 2L, region 23... 42 0.99
17gb|AC091748.3| Homo sapiens chromosome 15 clone RP11-99L18 map 1... 42 0.99
18gb|AC008321.7| Drosophila melanogaster, chromosome 2L, region 23... 42 0.99
19gb|AE003580.3| Drosophila melanogaster chromosome 2L, section 11... 42 0.99
20gb|L09204.1|DROTRS7A Drosophila melanogaster transfer RNA (tRNA-... 42 0.99
21ref|XM_666145.1| Plasmodium berghei strain ANKA hypothetical pro... 40 3.9
22emb|AL389916.15| Human DNA sequence from clone RP11-470J18 on ch... 40 3.9
23gb|AC007268.5| Arabidopsis thaliana chromosome 2 clone T27D6 map... 40 3.9
24ref|XM_693754.1| PREDICTED: Danio rerio similar to gamma filamin... 40 3.9
25emb|BX890617.13| Zebrafish DNA sequence from clone DKEYP-84F11 i... 40 3.9
26emb|BX470230.5| Zebrafish DNA sequence from clone CH211-284B12 i... 40 3.9
27dbj|AK113726.1| Ciona intestinalis cDNA, clone:cicl006j12, full ... 40 3.9
28emb|AL954190.5| Zebrafish DNA sequence from clone DKEY-30O6 in l... 40 3.9
29emb|AL772211.7| Mouse DNA sequence from clone RP23-473B24 on chr... 40 3.9 
>dbj|AB086416.1| Hordeum vulgare mRNA for O-methyltransferase, complete cds
          Length = 1372

 Score =  123 bits (62), Expect = 3e-25
 Identities = 113/130 (86%)
 Strand = Plus / Minus

                                                                        
Query: 168  ctacttggggtactccattgcccaaaaatcggcgtaaatgtaggtggccttgacgccggt 227
            |||||||| ||||||||||||||| || |  ||  | |||||| ||||||||||||| ||
Sbjct: 1154 ctacttggtgtactccattgcccagaagttcgcaaagatgtagctggccttgacgcctgt 1095

                                                                        
Query: 228  aaacccggcagccctggcgagcttctcgagggccctcaggtacctttccttgccgccggg 287
            |||||| |||||| |||| |||||||||| | |||| |||| ||||||||||||||||||
Sbjct: 1094 aaaccctgcagccttggctagcttctcgaagtccctgaggttcctttccttgccgccggg 1035

                      
Query: 288  gctgtacgcc 297
            ||||||||||
Sbjct: 1034 gctgtacgcc 1025
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>gb|AF033539.1|AF033539 Lolium perenne caffeic acid O-methyltransferase (OMT2) mRNA, complete
            cds
          Length = 1436

 Score =  101 bits (51), Expect = 1e-18
 Identities = 108/127 (85%)
 Strand = Plus / Minus

                                                                        
Query: 168  ctacttggggtactccattgcccaaaaatcggcgtaaatgtaggtggccttgacgccggt 227
            |||||| | ||||||||| ||||| || |||||| | |||||||||||| |||||| |||
Sbjct: 1130 ctacttagtgtactccatggcccagaagtcggcgaagatgtaggtggccgtgacgctggt 1071

                                                                        
Query: 228  aaacccggcagccctggcgagcttctcgagggccctcaggtacctttccttgccgccggg 287
            ||| |||||  || ||||||||||||| ||| ||||  ||||||| ||||||||||| ||
Sbjct: 1070 aaagccggcgcccttggcgagcttctccaggtccctgtggtacctctccttgccgcccgg 1011

                   
Query: 288  gctgtac 294
            |||||||
Sbjct: 1010 gctgtac 1004
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>ref|XM_480185.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1425

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 75/91 (82%)
 Strand = Plus / Minus

                                                                        
Query: 198  ggcgtaaatgtaggtggccttgacgccggtaaacccggcagccctggcgagcttctcgag 257
            |||||| |||||||||||||||| |||||| || ||||| || | |||||||| |  || 
Sbjct: 1159 ggcgtagatgtaggtggccttgaagccggtgaatccggcggcgcgggcgagctccctgaa 1100

                                           
Query: 258  ggccctcaggtacctttccttgccgccgggg 288
              |||||  |||||| |||||||||||||||
Sbjct: 1099 ctccctctcgtacctctccttgccgccgggg 1069
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>dbj|AK061859.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G09, full
           insert sequence
          Length = 1227

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 75/91 (82%)
 Strand = Plus / Minus

                                                                       
Query: 198 ggcgtaaatgtaggtggccttgacgccggtaaacccggcagccctggcgagcttctcgag 257
           |||||| |||||||||||||||| |||||| || ||||| || | |||||||| |  || 
Sbjct: 957 ggcgtagatgtaggtggccttgaagccggtgaatccggcggcgcgggcgagctccctgaa 898

                                          
Query: 258 ggccctcaggtacctttccttgccgccgggg 288
             |||||  |||||| |||||||||||||||
Sbjct: 897 ctccctctcgtacctctccttgccgccgggg 867
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 75/91 (82%)
 Strand = Plus / Plus

                                                                           
Query: 198     ggcgtaaatgtaggtggccttgacgccggtaaacccggcagccctggcgagcttctcgag 257
               |||||| |||||||||||||||| |||||| || ||||| || | |||||||| |  || 
Sbjct: 3331726 ggcgtagatgtaggtggccttgaagccggtgaatccggcggcgcgggcgagctccctgaa 3331785

                                              
Query: 258     ggccctcaggtacctttccttgccgccgggg 288
                 |||||  |||||| |||||||||||||||
Sbjct: 3331786 ctccctctcgtacctctccttgccgccgggg 3331816
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>gb|DQ288259.1| Oryza sativa (japonica cultivar-group) O-methyltransferase (ROMT-9)
            mRNA, complete cds
          Length = 1190

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 75/91 (82%)
 Strand = Plus / Minus

                                                                        
Query: 198  ggcgtaaatgtaggtggccttgacgccggtaaacccggcagccctggcgagcttctcgag 257
            |||||| |||||||||||||||| |||||| || ||||| || | |||||||| |  || 
Sbjct: 1091 ggcgtagatgtaggtggccttgaagccggtgaatccggcggcgcgggcgagctccctgaa 1032

                                           
Query: 258  ggccctcaggtacctttccttgccgccgggg 288
              |||||  |||||| |||||||||||||||
Sbjct: 1031 ctccctctcgtacctctccttgccgccgggg 1001
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>dbj|AB122056.1| Oryza sativa (japonica cultivar-group) COMT mRNA for caffeic acid
           o-methyl transferase, partial cds
          Length = 1067

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 75/91 (82%)
 Strand = Plus / Minus

                                                                       
Query: 198 ggcgtaaatgtaggtggccttgacgccggtaaacccggcagccctggcgagcttctcgag 257
           |||||| |||||||||||||||| |||||| || ||||| || | |||||||| |  || 
Sbjct: 777 ggcgtagatgtaggtggccttgaagccggtgaatccggcggcgcgggcgagctccctgaa 718

                                          
Query: 258 ggccctcaggtacctttccttgccgccgggg 288
             |||||  |||||| |||||||||||||||
Sbjct: 717 ctccctctcgtacctctccttgccgccgggg 687
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>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0438H08
          Length = 148626

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 75/91 (82%)
 Strand = Plus / Plus

                                                                          
Query: 198    ggcgtaaatgtaggtggccttgacgccggtaaacccggcagccctggcgagcttctcgag 257
              |||||| |||||||||||||||| |||||| || ||||| || | |||||||| |  || 
Sbjct: 109293 ggcgtagatgtaggtggccttgaagccggtgaatccggcggcgcgggcgagctccctgaa 109352

                                             
Query: 258    ggccctcaggtacctttccttgccgccgggg 288
                |||||  |||||| |||||||||||||||
Sbjct: 109353 ctccctctcgtacctctccttgccgccgggg 109383
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>dbj|AK064768.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000A05, full
            insert sequence
          Length = 1425

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 75/91 (82%)
 Strand = Plus / Minus

                                                                        
Query: 198  ggcgtaaatgtaggtggccttgacgccggtaaacccggcagccctggcgagcttctcgag 257
            |||||| |||||||||||||||| |||||| || ||||| || | |||||||| |  || 
Sbjct: 1159 ggcgtagatgtaggtggccttgaagccggtgaatccggcggcgcgggcgagctccctgaa 1100

                                           
Query: 258  ggccctcaggtacctttccttgccgccgggg 288
              |||||  |||||| |||||||||||||||
Sbjct: 1099 ctccctctcgtacctctccttgccgccgggg 1069
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>gb|AF153825.1|AF153825 Festuca arundinacea comt1c caffeic acid O-methyltransferase mRNA,
            complete cds
          Length = 1438

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                
Query: 198  ggcgtaaatgtaggtggccttgacgccggtaaacccggcagccctggcgagc 249
            |||||| ||||| |||| |||||||||||| || |||||  |||||||||||
Sbjct: 1114 ggcgtagatgtacgtggacttgacgccggtgaagccggctcccctggcgagc 1063
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>gb|AF153823.1|AF153823 Festuca arundinacea comt1a caffeic acid O-methyltransferase mRNA,
            complete cds
          Length = 1446

 Score = 46.1 bits (23), Expect = 0.063
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 198  ggcgtaaatgtaggtggccttgacgccggtaaacccggcagccctggcgag 248
            |||||| ||||| |||| |||||||||||| || |||||  ||||||||||
Sbjct: 1097 ggcgtagatgtacgtggacttgacgccggtgaatccggctcccctggcgag 1047
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>gb|AC079258.4| Homo sapiens BAC clone RP11-410J22 from 2, complete sequence
          Length = 169408

 Score = 46.1 bits (23), Expect = 0.063
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 130   caagaacacagcagcatgctata 152
             |||||||||||||||||||||||
Sbjct: 96328 caagaacacagcagcatgctata 96350
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>gb|AF033538.1|AF033538 Lolium perenne caffeic acid O-methyltransferase (OMT1) mRNA, complete
            cds
          Length = 1455

 Score = 46.1 bits (23), Expect = 0.063
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 198  ggcgtaaatgtaggtggccttgacgccggtaaacccggcagccctggcgag 248
            |||||| ||||| |||| |||||||||||| || |||||  ||||||||||
Sbjct: 1104 ggcgtagatgtacgtggacttgacgccggtgaatccggctcccctggcgag 1054
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>emb|BX037446.1|CNS09122 Single read from an extremity of a full-length cDNA clone made
          from Anopheles gambiae total adult females. 3-PRIME end
          of clone FK0AAA9DF09 of strain 6-9 of Anopheles gambiae
          (African malaria mosquito)
          Length = 691

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 cttccttttattcgaacacaa 47
          |||||||||||||||||||||
Sbjct: 25 cttccttttattcgaacacaa 45
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>gb|AC092868.2| Homo sapiens chromosome 15 clone RP11-356M20 map 15q21.3, complete
             sequence
          Length = 157533

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 107   tttattaaaaattgagctggt 127
             |||||||||||||||||||||
Sbjct: 49676 tttattaaaaattgagctggt 49656
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>gb|AC099022.1| Drosophila melanogaster, chromosome 2L, region 23C-23D, BAC clone
             BACR48B06, complete sequence
          Length = 184554

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 23    cttgcttccttttattcgaacacaa 47
             |||||||||||||||||||| ||||
Sbjct: 29824 cttgcttccttttattcgaatacaa 29800
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>gb|AC091748.3| Homo sapiens chromosome 15 clone RP11-99L18 map 15q21.3, complete
             sequence
          Length = 150294

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 107   tttattaaaaattgagctggt 127
             |||||||||||||||||||||
Sbjct: 21355 tttattaaaaattgagctggt 21335
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>gb|AC008321.7| Drosophila melanogaster, chromosome 2L, region 23D-23F, BAC clone
             BACR11E09, complete sequence
          Length = 169931

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 23    cttgcttccttttattcgaacacaa 47
             |||||||||||||||||||| ||||
Sbjct: 88188 cttgcttccttttattcgaatacaa 88164
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>gb|AE003580.3| Drosophila melanogaster chromosome 2L, section 11 of 83 of the complete
             sequence
          Length = 286920

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 23    cttgcttccttttattcgaacacaa 47
             |||||||||||||||||||| ||||
Sbjct: 28588 cttgcttccttttattcgaatacaa 28612
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>gb|L09204.1|DROTRS7A Drosophila melanogaster transfer RNA (tRNA-Ser7) gene
          Length = 3485

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 23  cttgcttccttttattcgaacacaa 47
           |||||||||||||||||||| ||||
Sbjct: 239 cttgcttccttttattcgaatacaa 215
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>ref|XM_666145.1| Plasmodium berghei strain ANKA hypothetical protein (PB401186.00.0)
           partial mRNA
          Length = 150

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 102 taagatttattaaaaattgagctg 125
           |||||||||| |||||||||||||
Sbjct: 93  taagatttataaaaaattgagctg 116
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>emb|AL389916.15| Human DNA sequence from clone RP11-470J18 on chromosome 10, complete
             sequence
          Length = 68567

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 246   gagcttctcgagggccctcaggta 269
             ||||||| ||||||||||||||||
Sbjct: 40467 gagcttcacgagggccctcaggta 40444
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>gb|AC007268.5| Arabidopsis thaliana chromosome 2 clone T27D6 map PR1, complete
            sequence
          Length = 89685

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 28   ttccttttattcgaacacaaaata 51
            ||||||| ||||||||||||||||
Sbjct: 1413 ttcctttaattcgaacacaaaata 1390
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>ref|XM_693754.1| PREDICTED: Danio rerio similar to gamma filamin (LOC570288), mRNA
          Length = 7913

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 45   caaaatacaaaatgaaacga 64
            ||||||||||||||||||||
Sbjct: 7345 caaaatacaaaatgaaacga 7326
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>emb|BX890617.13| Zebrafish DNA sequence from clone DKEYP-84F11 in linkage group 19,
             complete sequence
          Length = 182182

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    acacaaaatacaaaatgaaa 61
             ||||||||||||||||||||
Sbjct: 13106 acacaaaatacaaaatgaaa 13125
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>emb|BX470230.5| Zebrafish DNA sequence from clone CH211-284B12 in linkage group 4,
             complete sequence
          Length = 173564

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    caaaatacaaaatgaaacga 64
             ||||||||||||||||||||
Sbjct: 65724 caaaatacaaaatgaaacga 65705
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>dbj|AK113726.1| Ciona intestinalis cDNA, clone:cicl006j12, full insert sequence
          Length = 1703

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 48   aatacaaaatgaaacgattg 67
            ||||||||||||||||||||
Sbjct: 1599 aatacaaaatgaaacgattg 1580
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>emb|AL954190.5| Zebrafish DNA sequence from clone DKEY-30O6 in linkage group 4,
             complete sequence
          Length = 144062

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    caaaatacaaaatgaaacga 64
             ||||||||||||||||||||
Sbjct: 28373 caaaatacaaaatgaaacga 28354
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>emb|AL772211.7| Mouse DNA sequence from clone RP23-473B24 on chromosome 4, complete
             sequence
          Length = 189040

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   agaacacagcagcatgctat 151
             ||||||||||||||||||||
Sbjct: 51136 agaacacagcagcatgctat 51155


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,640,018
Number of Sequences: 3902068
Number of extensions: 3640018
Number of successful extensions: 65813
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65750
Number of HSP's gapped (non-prelim): 62
length of query: 297
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 275
effective length of database: 17,147,199,772
effective search space: 4715479937300
effective search space used: 4715479937300
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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