ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart25g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NSD1_MOUSE (O88491) Histone-lysine N-methyltransferase, H3 lysin... 30 2.2
2MTH2_DROME (Q9VRN2) Probable G-protein coupled receptor Mth-like... 29 3.7
3NSD1_HUMAN (Q96L73) Histone-lysine N-methyltransferase, H3 lysin... 29 3.7
4GP151_RAT (Q7TSN5) Probable G-protein coupled receptor 151 (GPCR... 28 4.8

>NSD1_MOUSE (O88491) Histone-lysine N-methyltransferase, H3 lysine-36 and H4|
            lysine-20 specific (EC 2.1.1.43) (H3-K36-HMTase)
            (H4-K20-HMTase) (Nuclear receptor binding SET domain
            containing protein 1) (NR-binding SET domain containing
            protein)
          Length = 2588

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 151  CYPVMCPSGFICLNVCFA 98
            C+P +CP+G  C N CF+
Sbjct: 1818 CHPTVCPAGVRCQNQCFS 1835



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>MTH2_DROME (Q9VRN2) Probable G-protein coupled receptor Mth-like 2 precursor|
           (Protein methuselah-like 2)
          Length = 518

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -3

Query: 170 LPPGVLLLPCDVPEWVYLFECLLCFVV-VGLHPCCKTLWYV-*PCFAPWLICMLSGF 6
           +P   L+LP    + V +   L+C V+ + ++ C K L  +   CF  +++C+  G+
Sbjct: 207 IPHNCLILPSRTGQTVVMITSLICLVLTIAVYLCVKKLMNLEGKCFICYMMCLFFGY 263



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>NSD1_HUMAN (Q96L73) Histone-lysine N-methyltransferase, H3 lysine-36 and H4|
            lysine-20 specific (EC 2.1.1.43) (H3-K36-HMTase)
            (H4-K20-HMTase) (Nuclear receptor binding SET domain
            containing protein 1) (NR-binding SET domain containing
            protein) (Androgen r
          Length = 2696

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 151  CYPVMCPSGFICLNVCFA 98
            C+P +CP+G  C N CF+
Sbjct: 1920 CHPTVCPAGGRCQNQCFS 1937



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>GP151_RAT (Q7TSN5) Probable G-protein coupled receptor 151 (GPCR-2037)|
          Length = 421

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -1

Query: 139 MCPSGFICLNVCFALWWLVYTRVVRPCGMF--DPASPLG*YACYLVSL 2
           +C S     ++C A   L +  V + C M+  DPA P+G + C + SL
Sbjct: 113 VCKSSDWFTHMCMAAKSLTFVVVAKVCFMYASDPAKPVGTHNCTIWSL 160


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.131    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,895,838
Number of Sequences: 219361
Number of extensions: 601269
Number of successful extensions: 1745
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1745
length of database: 80,573,946
effective HSP length: 56
effective length of database: 68,289,730
effective search space used: 1638953520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
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