Clone Name | rbart25g12 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ132399.1|HVU132399 Hordeum vulgare mRNA for alpha-tubulin 3 Length = 1692 Score = 329 bits (166), Expect = 2e-87 Identities = 223/239 (93%), Gaps = 6/239 (2%) Strand = Plus / Minus Query: 7 aaaccagataacatgcatattaaccaaggggcgaagcagggt-caaacataccacagggt 65 ||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| | Sbjct: 1666 aaaccagataacatgcatattaaccaaggtgcga--cagggttcaaacataccacaggct 1609 Query: 66 cttacaacacgggtgtaaaccaaccaccacaaagcaaagcaaacattcaaacagataaac 125 |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct: 1608 cttacaacacggttgtaaaccaacaaccacaaagcaaagcaagcattcaaacagataaag 1549 Query: 126 ccactcgggcacatcacagggtagcagcagcaccccaggagggaggccgcttctagtact 185 ||||||||||| |||||||||| ||||||||||||||||||| || |||||||||||| Sbjct: 1548 ccactcgggcagatcacagggtggcagcagcaccccaggaggcag---gcttctagtact 1492 Query: 186 cgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcctcgtagtcc 244 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1491 cgtcgccctcatcaccgtcctcgccctcgtcgaactcggcgccaacttcctcgtagtcc 1433
>emb|AJ005599.1|EIAJ5599 Eleusine indica mRNA for alpha-tubulin 1 (EiRtua1), complete cds Length = 1577 Score = 79.8 bits (40), Expect = 4e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| ||||||||||| ||||| |||||||||||||| | ||| || |||| Sbjct: 1432 tctagtactcgtcaccctcatcaccttcctcaccctcgtcgaactcagcgccgacctcct 1373 Query: 237 cgtagtcc 244 |||||||| Sbjct: 1372 cgtagtcc 1365
>emb|AJ005598.1|EIAJ5598 Eleusine indica mRNA for alpha-tubulin 1 (EiStua1), complete cds Length = 1636 Score = 79.8 bits (40), Expect = 4e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| ||||||||||| ||||| |||||||||||||| | ||| || |||| Sbjct: 1451 tctagtactcgtcaccctcatcaccttcctcaccctcgtcgaactcagcgccgacctcct 1392 Query: 237 cgtagtcc 244 |||||||| Sbjct: 1391 cgtagtcc 1384
>gb|AF008120.1|AF008120 Eleusine indica alpha tubulin 1 (TUA1) mRNA, complete cds Length = 1693 Score = 79.8 bits (40), Expect = 4e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| ||||||||||| ||||| |||||||||||||| | ||| || |||| Sbjct: 1452 tctagtactcgtcaccctcatcaccttcctcaccctcgtcgaactcagcgccgacctcct 1393 Query: 237 cgtagtcc 244 |||||||| Sbjct: 1392 cgtagtcc 1385
>gb|AC137924.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0095K08, complete sequence Length = 180999 Score = 71.9 bits (36), Expect = 9e-10 Identities = 60/68 (88%) Strand = Plus / Plus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| ||||||||||| || || || ||||||||||||| ||| || |||| Sbjct: 115643 tctagtactcgtcaccctcatcaccctcgtcaccatcgtcgaactcggagccgacctcct 115702 Query: 237 cgtagtcc 244 |||||||| Sbjct: 115703 cgtagtcc 115710
>emb|X91807.1|OSTA136 O.sativa mRNA for alpha-tubulin (clone OSTA-136) Length = 1677 Score = 71.9 bits (36), Expect = 9e-10 Identities = 60/68 (88%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| ||||||||||| || || || ||||||||||||| ||| || |||| Sbjct: 1438 tctagtactcgtcaccctcatcaccctcgtcaccatcgtcgaactcggagccgacctcct 1379 Query: 237 cgtagtcc 244 |||||||| Sbjct: 1378 cgtagtcc 1371
>emb|AJ586805.1| Setaria viridis tua2 gene for alpha tubulin, exons 1-4 Length = 2616 Score = 71.9 bits (36), Expect = 9e-10 Identities = 60/68 (88%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| ||||| || || |||||||||||||||||||| | ||| || |||| Sbjct: 2561 tctagtactcgtcaccctcgtctccttcctcgccctcgtcgaactcagcgccgacctcct 2502 Query: 237 cgtagtcc 244 |||||||| Sbjct: 2501 cgtagtcc 2494
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 71.9 bits (36), Expect = 9e-10 Identities = 60/68 (88%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| ||||||||||| || || || ||||||||||||| ||| || |||| Sbjct: 7882305 tctagtactcgtcaccctcatcaccctcgtcaccatcgtcgaactcggagccgacctcct 7882246 Query: 237 cgtagtcc 244 |||||||| Sbjct: 7882245 cgtagtcc 7882238
>dbj|AK105080.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-A05, full insert sequence Length = 359 Score = 71.9 bits (36), Expect = 9e-10 Identities = 60/68 (88%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| ||||||||||| || || || ||||||||||||| ||| || |||| Sbjct: 135 tctagtactcgtcaccctcatcaccctcgtcaccatcgtcgaactcggagccgacctcct 76 Query: 237 cgtagtcc 244 |||||||| Sbjct: 75 cgtagtcc 68
>dbj|AK102560.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033097H22, full insert sequence Length = 1760 Score = 71.9 bits (36), Expect = 9e-10 Identities = 60/68 (88%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| ||||||||||| || || || ||||||||||||| ||| || |||| Sbjct: 1448 tctagtactcgtcaccctcatcaccctcgtcaccatcgtcgaactcggagccgacctcct 1389 Query: 237 cgtagtcc 244 |||||||| Sbjct: 1388 cgtagtcc 1381
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 71.9 bits (36), Expect = 9e-10 Identities = 60/68 (88%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| ||||||||||| || || || ||||||||||||| ||| || |||| Sbjct: 7952392 tctagtactcgtcaccctcatcaccctcgtcaccatcgtcgaactcggagccgacctcct 7952333 Query: 237 cgtagtcc 244 |||||||| Sbjct: 7952332 cgtagtcc 7952325
>gb|U76558.1|TAU76558 Triticum aestivum alpha-tubulin mRNA, complete cds Length = 1675 Score = 69.9 bits (35), Expect = 4e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 182 tactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcctcgtag 241 ||||| |||||||||||||||||||| |||||||||||||| | |||||||| || ||| Sbjct: 1464 tactcatcgccctcatcaccgtcctcaccctcgtcgaactcagcaccaacttcttcatag 1405 Query: 242 tcc 244 ||| Sbjct: 1404 tcc 1402 Score = 63.9 bits (32), Expect = 2e-07 Identities = 130/160 (81%), Gaps = 12/160 (7%) Strand = Plus / Minus Query: 8 aaccagataacatgcatattaaccaaggggcgaagcagggtcaaacataccacagggtct 67 ||||||||| |||||||||||||||||| || ||||||| ||||| |||| | || ||| Sbjct: 1654 aaccagatagcatgcatattaaccaaggtgcaaagcaggttcaaagatacaa--ggttct 1597 Query: 68 tacaacac----gggtgtaaaccaaccaccacaaagcaaag---caaacattca---aac 117 |||||||| || |||||| ||| |||||||||||||| |||||| || ||| Sbjct: 1596 tacaacacaacaggttgtaaaacaaacaccacaaagcaaacgttcaaacagacagataac 1537 Query: 118 agataaacccactcgggcacatcacagggtagcagcagca 157 ||||||| ||||||||||| |||| ||| |||||| |||| Sbjct: 1536 agataaagccactcgggcagatcataggatagcagtagca 1497
>gb|BT016741.1| Zea mays clone Contig574 mRNA sequence Length = 1677 Score = 60.0 bits (30), Expect = 3e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 175 cttctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttc 234 |||||||||||| || || |||||||| ||||||||||| || ||||| | ||||| || Sbjct: 1477 cttctagtactcatcaccatcatcaccttcctcgccctcatcaaactcagcaccaacctc 1418 Query: 235 ctcgtagtcc 244 |||||||||| Sbjct: 1417 ctcgtagtcc 1408
>gb|BT016625.1| Zea mays clone Contig458 mRNA sequence Length = 1771 Score = 56.0 bits (28), Expect = 5e-05 Identities = 58/68 (85%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| ||||| || || ||||||||||| |||||||| | || || |||| Sbjct: 1462 tctagtactcgtcaccctcgtcgccatcctcgccctcatcgaactcagcaccgacctcct 1403 Query: 237 cgtagtcc 244 |||||||| Sbjct: 1402 cgtagtcc 1395
>gb|BT016539.1| Zea mays clone Contig372 mRNA sequence Length = 1712 Score = 56.0 bits (28), Expect = 5e-05 Identities = 58/68 (85%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| ||||| || |||||||| |||||||| ||||| | || || |||| Sbjct: 1479 tctagtactcgtcaccctcgtcgccgtcctcaccctcgtcaaactcagcaccgacctcct 1420 Query: 237 cgtagtcc 244 |||||||| Sbjct: 1419 cgtagtcc 1412
>gb|BT017959.1| Zea mays clone EL01N0523A02.c mRNA sequence Length = 668 Score = 56.0 bits (28), Expect = 5e-05 Identities = 58/68 (85%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| ||||| || || ||||||||||| |||||||| | || || |||| Sbjct: 325 tctagtactcgtcaccctcgtcgccatcctcgccctcatcgaactcagcaccgacctcct 266 Query: 237 cgtagtcc 244 |||||||| Sbjct: 265 cgtagtcc 258
>emb|X15704.1|ZMALPTUB Zea mays tandem genes for alpha1-tubulin and alpha2-tubulin Length = 9244 Score = 56.0 bits (28), Expect = 5e-05 Identities = 58/68 (85%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| ||||| || || ||||||||||| |||||||| | || || |||| Sbjct: 8892 tctagtactcgtcaccctcgtcgccatcctcgccctcatcgaactcagcaccgacctcct 8833 Query: 237 cgtagtcc 244 |||||||| Sbjct: 8832 cgtagtcc 8825 Score = 52.0 bits (26), Expect = 8e-04 Identities = 59/70 (84%) Strand = Plus / Minus Query: 175 cttctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttc 234 |||||||||||| || || |||||||| ||||| ||||| || ||||| | ||||| || Sbjct: 5030 cttctagtactcatcaccatcatcaccttcctcaccctcatcaaactcagcaccaacctc 4971 Query: 235 ctcgtagtcc 244 |||||||||| Sbjct: 4970 ctcgtagtcc 4961
>emb|X73980.1|ZMTUA4 Z.mays mRNA for alpha-tubulin Length = 959 Score = 56.0 bits (28), Expect = 5e-05 Identities = 58/68 (85%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| ||||| || |||||||| |||||||| ||||| | || || |||| Sbjct: 772 tctagtactcgtcaccctcgtcgccgtcctcaccctcgtcaaactcagcaccgacctcct 713 Query: 237 cgtagtcc 244 |||||||| Sbjct: 712 cgtagtcc 705
>emb|AJ420856.1|ZMA420856 Zea mays partial mRNA for alpha tubulin (tua4 gene) Length = 630 Score = 56.0 bits (28), Expect = 5e-05 Identities = 58/68 (85%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| ||||| || |||||||| |||||||| ||||| | || || |||| Sbjct: 443 tctagtactcgtcaccctcgtcgccgtcctcaccctcgtcaaactcagcaccgacctcct 384 Query: 237 cgtagtcc 244 |||||||| Sbjct: 383 cgtagtcc 376
>gb|AY103544.1| Zea mays PCO076329 mRNA sequence Length = 1967 Score = 56.0 bits (28), Expect = 5e-05 Identities = 58/68 (85%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| ||||| || |||||||| |||||||| ||||| | || || |||| Sbjct: 1586 tctagtactcgtcaccctcgtcgccgtcctcaccctcgtcaaactcagcaccgacctcct 1527 Query: 237 cgtagtcc 244 |||||||| Sbjct: 1526 cgtagtcc 1519
>emb|X63180.1|ZMALTUB4B Z.mays (B37) mRNA for alpha-tubulin 4 Length = 236 Score = 52.0 bits (26), Expect = 8e-04 Identities = 41/46 (89%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactc 222 ||||||||||||| ||||| || |||||||| |||||||| ||||| Sbjct: 49 tctagtactcgtcaccctcgtcgccgtcctcaccctcgtcaaactc 4
>gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genomic sequence, complete sequence Length = 129440 Score = 48.1 bits (24), Expect = 0.013 Identities = 57/68 (83%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| || ||||| || ||||| ||||||| |||| | |||||| |||| Sbjct: 66960 tctagtactcgtcaccatcatcgccatcctcattctcgtcggactcagcgccaacctcct 66901 Query: 237 cgtagtcc 244 |||||||| Sbjct: 66900 cgtagtcc 66893
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.013 Identities = 57/68 (83%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| || ||||| || ||||| ||||||| |||| | |||||| |||| Sbjct: 29235145 tctagtactcgtcaccatcatcgccatcctcattctcgtcggactcagcgccaacctcct 29235086 Query: 237 cgtagtcc 244 |||||||| Sbjct: 29235085 cgtagtcc 29235078
>gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genomic sequence, complete sequence Length = 139788 Score = 48.1 bits (24), Expect = 0.013 Identities = 57/68 (83%) Strand = Plus / Plus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| || ||||| || ||||| ||||||| |||| | |||||| |||| Sbjct: 120855 tctagtactcgtcaccatcatcgccatcctcattctcgtcggactcagcgccaacctcct 120914 Query: 237 cgtagtcc 244 |||||||| Sbjct: 120915 cgtagtcc 120922
>emb|Y08490.1|HVATUB2 H.vulgare mRNA for alpha-tubulin 2 Length = 1708 Score = 48.1 bits (24), Expect = 0.013 Identities = 57/68 (83%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 |||||||||| || ||||| ||||| ||||| || ||||||||||| | |||||||| | Sbjct: 1456 tctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagcaccaacttctt 1397 Query: 237 cgtagtcc 244 | |||||| Sbjct: 1396 catagtcc 1389 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 caaagcaaacattcaaacaga 120 ||||||||||||||||||||| Sbjct: 1553 caaagcaaacattcaaacaga 1533
>emb|X91806.1|OSTA111 O.sativa mRNA for alpha-tubulin (clone OSTA-111) Length = 1680 Score = 48.1 bits (24), Expect = 0.013 Identities = 57/68 (83%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| || ||||| || ||||| ||||||| |||| | |||||| |||| Sbjct: 1470 tctagtactcgtcaccatcatcgccatcctcattctcgtcggactcagagccaacctcct 1411 Query: 237 cgtagtcc 244 |||||||| Sbjct: 1410 cgtagtcc 1403
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.013 Identities = 57/68 (83%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| || ||||| || ||||| ||||||| |||| | |||||| |||| Sbjct: 29326521 tctagtactcgtcaccatcatcgccatcctcattctcgtcggactcagcgccaacctcct 29326462 Query: 237 cgtagtcc 244 |||||||| Sbjct: 29326461 cgtagtcc 29326454
>gb|U40042.1|HVU40042 Hordeum vulgare alpha tubulin (tubA) mRNA, complete cds Length = 1629 Score = 48.1 bits (24), Expect = 0.013 Identities = 57/68 (83%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 |||||||||| || ||||| ||||| ||||| || ||||||||||| | |||||||| | Sbjct: 1457 tctagtactcatcaccctcgtcaccatcctcaccatcgtcgaactcagcaccaacttctt 1398 Query: 237 cgtagtcc 244 | |||||| Sbjct: 1397 catagtcc 1390 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 caaagcaaacattcaaacaga 120 ||||||||||||||||||||| Sbjct: 1554 caaagcaaacattcaaacaga 1534
>gb|AF182523.1|AF182523 Oryza sativa alpha-tubulin (TubA1) gene, promoter and complete cds Length = 4305 Score = 48.1 bits (24), Expect = 0.013 Identities = 57/68 (83%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| || ||||| || ||||| ||||||| |||| | |||||| |||| Sbjct: 3652 tctagtactcgtcaccatcatcgccatcctcattctcgtcggactcagcgccaacctcct 3593 Query: 237 cgtagtcc 244 |||||||| Sbjct: 3592 cgtagtcc 3585
>dbj|AK119520.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D01, full insert sequence Length = 1367 Score = 48.1 bits (24), Expect = 0.013 Identities = 57/68 (83%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| || ||||| || ||||| ||||||| |||| | |||||| |||| Sbjct: 1128 tctagtactcgtcaccatcatcgccatcctcattctcgtcggactcagcgccaacctcct 1069 Query: 237 cgtagtcc 244 |||||||| Sbjct: 1068 cgtagtcc 1061
>dbj|AK119362.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-G09, full insert sequence Length = 1721 Score = 48.1 bits (24), Expect = 0.013 Identities = 57/68 (83%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| || ||||| || ||||| ||||||| |||| | |||||| |||| Sbjct: 1482 tctagtactcgtcaccatcatcgccatcctcattctcgtcggactcagcgccaacctcct 1423 Query: 237 cgtagtcc 244 |||||||| Sbjct: 1422 cgtagtcc 1415
>dbj|AK119247.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-C05, full insert sequence Length = 1721 Score = 48.1 bits (24), Expect = 0.013 Identities = 57/68 (83%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| || ||||| || ||||| ||||||| |||| | |||||| |||| Sbjct: 1482 tctagtactcgtcaccatcatcgccatcctcattctcgtcggactcagcgccaacctcct 1423 Query: 237 cgtagtcc 244 |||||||| Sbjct: 1422 cgtagtcc 1415
>dbj|AK102194.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087C05, full insert sequence Length = 1745 Score = 48.1 bits (24), Expect = 0.013 Identities = 57/68 (83%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| || ||||| || ||||| ||||||| |||| | |||||| |||| Sbjct: 1483 tctagtactcgtcaccatcatcgccatcctcattctcgtcggactcagcgccaacctcct 1424 Query: 237 cgtagtcc 244 |||||||| Sbjct: 1423 cgtagtcc 1416
>ref|XM_362021.1| Magnaporthe grisea 70-15 hypothetical protein (MG04466.4) partial cds Length = 3363 Score = 46.1 bits (23), Expect = 0.051 Identities = 23/23 (100%) Strand = Plus / Plus Query: 189 cgccctcatcaccgtcctcgccc 211 ||||||||||||||||||||||| Sbjct: 2805 cgccctcatcaccgtcctcgccc 2827
>gb|AF357237.1|AF357237 Pinus taeda alpha-tubulin mRNA, partial cds Length = 394 Score = 46.1 bits (23), Expect = 0.051 Identities = 32/35 (91%) Strand = Plus / Minus Query: 179 tagtactcgtcgccctcatcaccgtcctcgccctc 213 ||||||||||| ||||||||||| ||||| ||||| Sbjct: 165 tagtactcgtctccctcatcaccttcctctccctc 131
>gb|AC122931.4| Mus musculus BAC clone RP23-15C15 from 9, complete sequence Length = 192274 Score = 44.1 bits (22), Expect = 0.20 Identities = 28/30 (93%) Strand = Plus / Plus Query: 95 caaagcaaagcaaacattcaaacagataaa 124 |||||||||||||||| |||||||||||| Sbjct: 102919 caaagcaaagcaaacaagcaaacagataaa 102948
>gb|AC153011.4| Mus musculus BAC clone RP23-316O20 from chromosome 9, complete sequence Length = 190332 Score = 44.1 bits (22), Expect = 0.20 Identities = 28/30 (93%) Strand = Plus / Plus Query: 95 caaagcaaagcaaacattcaaacagataaa 124 |||||||||||||||| |||||||||||| Sbjct: 189987 caaagcaaagcaaacaagcaaacagataaa 190016
>gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, complete sequence Length = 491611 Score = 42.1 bits (21), Expect = 0.80 Identities = 30/33 (90%) Strand = Plus / Minus Query: 184 ctcgtcgccctcatcaccgtcctcgccctcgtc 216 |||||||||||| ||||| || ||||||||||| Sbjct: 457764 ctcgtcgccctcgtcaccttcgtcgccctcgtc 457732
>ref|XM_508867.1| PREDICTED: Pan troglodytes similar to immunoglobulin superfamily, member 9 (LOC451676), mRNA Length = 6363 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Minus Query: 129 ctcgggcacatcacagggtagcagc 153 ||||||||||||||||||| ||||| Sbjct: 3915 ctcgggcacatcacagggtggcagc 3891
>gb|AC123909.2| Homo sapiens chromosome 16 clone RP11-27L11, complete sequence Length = 134922 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 acaaagcaaagcaaacattca 114 ||||||||||||||||||||| Sbjct: 16032 acaaagcaaagcaaacattca 16012
>emb|AL158193.13| Human DNA sequence from clone RP11-400N12 on chromosome 13 Contains the 3' end of the UBL3 gene for ubiquitin-like 3 and a CpG island, complete sequence Length = 172896 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 ccacaaagcaaagcaaacatt 112 ||||||||||||||||||||| Sbjct: 69152 ccacaaagcaaagcaaacatt 69172
>dbj|AB028953.1| Homo sapiens mRNA for KIAA1030 protein, partial cds Length = 5319 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Minus Query: 129 ctcgggcacatcacagggtagcagc 153 ||||||||||||||||||| ||||| Sbjct: 1446 ctcgggcacatcacagggtggcagc 1422
>ref|XM_940668.1| PREDICTED: Homo sapiens immunoglobulin superfamily, member 9B (IGSF9B), mRNA Length = 7075 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Minus Query: 129 ctcgggcacatcacagggtagcagc 153 ||||||||||||||||||| ||||| Sbjct: 3207 ctcgggcacatcacagggtggcagc 3183
>ref|XM_290502.3| PREDICTED: Homo sapiens immunoglobulin superfamily, member 9B (IGSF9B), mRNA Length = 7075 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Minus Query: 129 ctcgggcacatcacagggtagcagc 153 ||||||||||||||||||| ||||| Sbjct: 3207 ctcgggcacatcacagggtggcagc 3183
>gb|AC009062.8| Homo sapiens chromosome 16 clone RP11-298C15, complete sequence Length = 207345 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 acaaagcaaagcaaacattca 114 ||||||||||||||||||||| Sbjct: 98665 acaaagcaaagcaaacattca 98685
>dbj|AK119638.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F05, full insert sequence Length = 1721 Score = 42.1 bits (21), Expect = 0.80 Identities = 54/65 (83%) Strand = Plus / Minus Query: 180 agtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcctcgt 239 |||||||||| || ||||| || ||||| ||||||| |||| | |||||| ||||||| Sbjct: 1479 agtactcgtcaccatcatcgccatcctcattctcgtcggactcagcgccaacctcctcgt 1420 Query: 240 agtcc 244 ||||| Sbjct: 1419 agtcc 1415
>emb|Y14681.1|AVPTSP Azotobacter vinelandii ptsP gene Length = 3000 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 203 tcctcgccctcgtcgaactcg 223 ||||||||||||||||||||| Sbjct: 666 tcctcgccctcgtcgaactcg 646
>dbj|AP001979.7| Homo sapiens genomic DNA, chromosome 11 clone:RP11-259P6, complete sequence Length = 147533 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Plus Query: 129 ctcgggcacatcacagggtagcagc 153 ||||||||||||||||||| ||||| Sbjct: 123624 ctcgggcacatcacagggtggcagc 123648
>gb|AC107678.14| Mus musculus chromosome 1, clone RP23-252K18, complete sequence Length = 169766 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 accacaaagcaaagcaaaca 110 |||||||||||||||||||| Sbjct: 147301 accacaaagcaaagcaaaca 147320
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ccctcatcaccgtcctcgcc 210 |||||||||||||||||||| Sbjct: 1830871 ccctcatcaccgtcctcgcc 1830890
>gb|AC008255.9| Drosophila melanogaster clone BACR48D17, complete sequence Length = 183316 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 gcaaagcaaacattcaaaca 118 |||||||||||||||||||| Sbjct: 17440 gcaaagcaaacattcaaaca 17421
>gb|AC122352.4| Mus musculus BAC clone RP23-389C11 from chromosome 16, complete sequence Length = 196519 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 cacaaagcaaagcaaacattcaaa 116 |||||||||||||||||| ||||| Sbjct: 103401 cacaaagcaaagcaaacaatcaaa 103424
>gb|AC126935.3| Mus musculus BAC clone RP24-186K24 from chromosome 1, complete sequence Length = 197488 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 accacaaagcaaagcaaaca 110 |||||||||||||||||||| Sbjct: 147059 accacaaagcaaagcaaaca 147078
>emb|X99623.1|HVATUB1 H.vulgare mRNA for alpha-tubulin 1 Length = 1617 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 221 tcggggccaacttcctcgtagtcc 244 |||| ||||||||||||||||||| Sbjct: 1390 tcggcgccaacttcctcgtagtcc 1367
>gb|AC116419.32| Mus musculus chromosome 1, clone RP24-89C10, complete sequence Length = 229522 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 aaaccagataacatgcatat 26 |||||||||||||||||||| Sbjct: 86257 aaaccagataacatgcatat 86238
>emb|BX248497.11| Zebrafish DNA sequence from clone DKEY-181M9 in linkage group 2, complete sequence Length = 145610 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 ataacatgcatattaaccaa 33 |||||||||||||||||||| Sbjct: 101584 ataacatgcatattaaccaa 101565
>dbj|AB194902.1| Chlamydomonas reinhardtii LSP1 gene for putative signal transducer for phototaxis, complete cds Length = 6480 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 192 cctcatcaccgtcctcgccctcgt 215 |||||||||||||||| ||||||| Sbjct: 2805 cctcatcaccgtcctcaccctcgt 2782
>ref|XM_223397.3| PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (LOC305332), mRNA Length = 8112 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 agcagcaccccaggagggaggccg 174 |||||||||| ||||||||||||| Sbjct: 7064 agcagcacccgaggagggaggccg 7087
>emb|CR936278.9| Zebrafish DNA sequence from clone CH211-46O5 in linkage group 19, complete sequence Length = 146216 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 acaaagcaaagcaaacattcaaac 117 |||||||||| ||||||||||||| Sbjct: 15792 acaaagcaaaacaaacattcaaac 15815
>gb|AE003498.5| Drosophila melanogaster chromosome X, section 50 of 74 of the complete sequence Length = 341520 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 gcaaagcaaacattcaaaca 118 |||||||||||||||||||| Sbjct: 298301 gcaaagcaaacattcaaaca 298320
>gb|AC121944.4| Mus musculus BAC clone RP24-211H19 from chromosome 1, complete sequence Length = 154484 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 accacaaagcaaagcaaaca 110 |||||||||||||||||||| Sbjct: 53384 accacaaagcaaagcaaaca 53403
>gb|AC174648.2| Mus musculus BAC clone CH36-236I19 from chromosome 1, complete sequence Length = 202877 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 accacaaagcaaagcaaaca 110 |||||||||||||||||||| Sbjct: 90053 accacaaagcaaagcaaaca 90072
>gb|AF030548.1|AF030548 Oryza sativa tubulin (RiP3) mRNA, complete cds Length = 1740 Score = 40.1 bits (20), Expect = 3.1 Identities = 56/68 (82%) Strand = Plus / Minus Query: 177 tctagtactcgtcgccctcatcaccgtcctcgccctcgtcgaactcggggccaacttcct 236 ||||||||||||| || ||||| || ||||| ||||||| |||| | |||||| |||| Sbjct: 1459 tctagtactcgtcaccatcatcgccatcctcattctcgtcggactcagcgccaacctcct 1400 Query: 237 cgtagtcc 244 ||| |||| Sbjct: 1399 cgtggtcc 1392
>emb|AL713861.10| Mouse DNA sequence from clone RP23-367H15 on chromosome X, complete sequence Length = 169838 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 82 aaaccaaccaccacaaagcaaagcaaac 109 |||| ||||||| ||||||||||||||| Sbjct: 19569 aaactaaccaccccaaagcaaagcaaac 19596 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,935,701 Number of Sequences: 3902068 Number of extensions: 1935701 Number of successful extensions: 52968 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52804 Number of HSP's gapped (non-prelim): 161 length of query: 244 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 222 effective length of database: 17,147,199,772 effective search space: 3806678349384 effective search space used: 3806678349384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)