Clone Name | rbart25g10 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 141 bits (71), Expect = 2e-30 Identities = 155/183 (84%) Strand = Plus / Minus Query: 148 tgatcatggaggcggcaaagtcggccaaaaaggcggcggggttggcgctgtaaaggcgca 207 |||||||||| ||||| ||||| | | | |||||||||| ||||| |||||| || ||| Sbjct: 7761270 tgatcatggacgcggcgaagtccgacgagaaggcggcggcgttggagctgtacagctgca 7761211 Query: 208 ccagggagtccacctgcccgttgttgaaaagttcctggtcggagcgcaacagcccggcgc 267 ||| ||||||||| ||||||||||||| || |||||||||||| ||| ||||||||||| Sbjct: 7761210 ccaccgagtccaccggcccgttgttgaacagctcctggtcggagtgcagcagcccggcgc 7761151 Query: 268 cggtcatgaggttgcggtagtagccgttgtcaaactcgttgggggtgagcgggtcaagcg 327 ||| | |||||||||||||||||||||||| ||| ||| |||||| || | ||| |||| Sbjct: 7761150 cggcgacgaggttgcggtagtagccgttgtcgaacgcgtcgggggtcagggagtccagcg 7761091 Query: 328 gcg 330 ||| Sbjct: 7761090 gcg 7761088 Score = 46.1 bits (23), Expect = 0.071 Identities = 26/27 (96%) Strand = Plus / Minus Query: 272 catgaggttgcggtagtagccgttgtc 298 ||||||||||||| ||||||||||||| Sbjct: 7752104 catgaggttgcggaagtagccgttgtc 7752078 Score = 40.1 bits (20), Expect = 4.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 276 aggttgcggtagtagccgttgtcaaactcgtt 307 ||||||||||||||| ||||||| ||| |||| Sbjct: 7938498 aggttgcggtagtaggcgttgtcgaacacgtt 7938467 Score = 40.1 bits (20), Expect = 4.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 111 ccgctggaggcagtgagcgggctgacgttgcc 142 ||||||||| | ||||||||||||| |||||| Sbjct: 7752265 ccgctggagccggtgagcgggctgatgttgcc 7752234
>dbj|AP003991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_A12 Length = 149089 Score = 141 bits (71), Expect = 2e-30 Identities = 155/183 (84%) Strand = Plus / Minus Query: 148 tgatcatggaggcggcaaagtcggccaaaaaggcggcggggttggcgctgtaaaggcgca 207 |||||||||| ||||| ||||| | | | |||||||||| ||||| |||||| || ||| Sbjct: 97535 tgatcatggacgcggcgaagtccgacgagaaggcggcggcgttggagctgtacagctgca 97476 Query: 208 ccagggagtccacctgcccgttgttgaaaagttcctggtcggagcgcaacagcccggcgc 267 ||| ||||||||| ||||||||||||| || |||||||||||| ||| ||||||||||| Sbjct: 97475 ccaccgagtccaccggcccgttgttgaacagctcctggtcggagtgcagcagcccggcgc 97416 Query: 268 cggtcatgaggttgcggtagtagccgttgtcaaactcgttgggggtgagcgggtcaagcg 327 ||| | |||||||||||||||||||||||| ||| ||| |||||| || | ||| |||| Sbjct: 97415 cggcgacgaggttgcggtagtagccgttgtcgaacgcgtcgggggtcagggagtccagcg 97356 Query: 328 gcg 330 ||| Sbjct: 97355 gcg 97353 Score = 46.1 bits (23), Expect = 0.071 Identities = 26/27 (96%) Strand = Plus / Minus Query: 272 catgaggttgcggtagtagccgttgtc 298 ||||||||||||| ||||||||||||| Sbjct: 88369 catgaggttgcggaagtagccgttgtc 88343 Score = 40.1 bits (20), Expect = 4.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 111 ccgctggaggcagtgagcgggctgacgttgcc 142 ||||||||| | ||||||||||||| |||||| Sbjct: 88530 ccgctggagccggtgagcgggctgatgttgcc 88499
>dbj|AP005698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0006L10 Length = 171115 Score = 141 bits (71), Expect = 2e-30 Identities = 155/183 (84%) Strand = Plus / Minus Query: 148 tgatcatggaggcggcaaagtcggccaaaaaggcggcggggttggcgctgtaaaggcgca 207 |||||||||| ||||| ||||| | | | |||||||||| ||||| |||||| || ||| Sbjct: 1633 tgatcatggacgcggcgaagtccgacgagaaggcggcggcgttggagctgtacagctgca 1574 Query: 208 ccagggagtccacctgcccgttgttgaaaagttcctggtcggagcgcaacagcccggcgc 267 ||| ||||||||| ||||||||||||| || |||||||||||| ||| ||||||||||| Sbjct: 1573 ccaccgagtccaccggcccgttgttgaacagctcctggtcggagtgcagcagcccggcgc 1514 Query: 268 cggtcatgaggttgcggtagtagccgttgtcaaactcgttgggggtgagcgggtcaagcg 327 ||| | |||||||||||||||||||||||| ||| ||| |||||| || | ||| |||| Sbjct: 1513 cggcgacgaggttgcggtagtagccgttgtcgaacgcgtcgggggtcagggagtccagcg 1454 Query: 328 gcg 330 ||| Sbjct: 1453 gcg 1451
>dbj|AK104670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-A04, full insert sequence Length = 1184 Score = 141 bits (71), Expect = 2e-30 Identities = 155/183 (84%) Strand = Plus / Minus Query: 148 tgatcatggaggcggcaaagtcggccaaaaaggcggcggggttggcgctgtaaaggcgca 207 |||||||||| ||||| ||||| | | | |||||||||| ||||| |||||| || ||| Sbjct: 958 tgatcatggacgcggcgaagtccgacgagaaggcggcggcgttggagctgtacagctgca 899 Query: 208 ccagggagtccacctgcccgttgttgaaaagttcctggtcggagcgcaacagcccggcgc 267 ||| ||||||||| ||||||||||||| || |||||||||||| ||| ||||||||||| Sbjct: 898 ccaccgagtccaccggcccgttgttgaacagctcctggtcggagtgcagcagcccggcgc 839 Query: 268 cggtcatgaggttgcggtagtagccgttgtcaaactcgttgggggtgagcgggtcaagcg 327 ||| | |||||||||||||||||||||||| ||| ||| |||||| || | ||| |||| Sbjct: 838 cggcgacgaggttgcggtagtagccgttgtcgaacgcgtcgggggtcagggagtccagcg 779 Query: 328 gcg 330 ||| Sbjct: 778 gcg 776
>dbj|AK099886.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112B18, full insert sequence Length = 1230 Score = 141 bits (71), Expect = 2e-30 Identities = 155/183 (84%) Strand = Plus / Minus Query: 148 tgatcatggaggcggcaaagtcggccaaaaaggcggcggggttggcgctgtaaaggcgca 207 |||||||||| ||||| ||||| | | | |||||||||| ||||| |||||| || ||| Sbjct: 986 tgatcatggacgcggcgaagtccgacgagaaggcggcggcgttggagctgtacagctgca 927 Query: 208 ccagggagtccacctgcccgttgttgaaaagttcctggtcggagcgcaacagcccggcgc 267 ||| ||||||||| ||||||||||||| || |||||||||||| ||| ||||||||||| Sbjct: 926 ccaccgagtccaccggcccgttgttgaacagctcctggtcggagtgcagcagcccggcgc 867 Query: 268 cggtcatgaggttgcggtagtagccgttgtcaaactcgttgggggtgagcgggtcaagcg 327 ||| | |||||||||||||||||||||||| ||| ||| |||||| || | ||| |||| Sbjct: 866 cggcgacgaggttgcggtagtagccgttgtcgaacgcgtcgggggtcagggagtccagcg 807 Query: 328 gcg 330 ||| Sbjct: 806 gcg 804
>dbj|AK068642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157D18, full insert sequence Length = 1171 Score = 141 bits (71), Expect = 2e-30 Identities = 155/183 (84%) Strand = Plus / Minus Query: 148 tgatcatggaggcggcaaagtcggccaaaaaggcggcggggttggcgctgtaaaggcgca 207 |||||||||| ||||| ||||| | | | |||||||||| ||||| |||||| || ||| Sbjct: 959 tgatcatggacgcggcgaagtccgacgagaaggcggcggcgttggagctgtacagctgca 900 Query: 208 ccagggagtccacctgcccgttgttgaaaagttcctggtcggagcgcaacagcccggcgc 267 ||| ||||||||| ||||||||||||| || |||||||||||| ||| ||||||||||| Sbjct: 899 ccaccgagtccaccggcccgttgttgaacagctcctggtcggagtgcagcagcccggcgc 840 Query: 268 cggtcatgaggttgcggtagtagccgttgtcaaactcgttgggggtgagcgggtcaagcg 327 ||| | |||||||||||||||||||||||| ||| ||| |||||| || | ||| |||| Sbjct: 839 cggcgacgaggttgcggtagtagccgttgtcgaacgcgtcgggggtcagggagtccagcg 780 Query: 328 gcg 330 ||| Sbjct: 779 gcg 777
>tpe|BN000555.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx26 gene for class III peroxidase 26 precursor, exons 1-3 Length = 1175 Score = 141 bits (71), Expect = 2e-30 Identities = 155/183 (84%) Strand = Plus / Minus Query: 148 tgatcatggaggcggcaaagtcggccaaaaaggcggcggggttggcgctgtaaaggcgca 207 |||||||||| ||||| ||||| | | | |||||||||| ||||| |||||| || ||| Sbjct: 1101 tgatcatggacgcggcgaagtccgacgagaaggcggcggcgttggagctgtacagctgca 1042 Query: 208 ccagggagtccacctgcccgttgttgaaaagttcctggtcggagcgcaacagcccggcgc 267 ||| ||||||||| ||||||||||||| || |||||||||||| ||| ||||||||||| Sbjct: 1041 ccaccgagtccaccggcccgttgttgaacagctcctggtcggagtgcagcagcccggcgc 982 Query: 268 cggtcatgaggttgcggtagtagccgttgtcaaactcgttgggggtgagcgggtcaagcg 327 ||| | |||||||||||||||||||||||| ||| ||| |||||| || | ||| |||| Sbjct: 981 cggcgacgaggttgcggtagtagccgttgtcgaacgcgtcgggggtcagggagtccagcg 922 Query: 328 gcg 330 ||| Sbjct: 921 gcg 919
>tpe|BN000556.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx27 gene for class III peroxidase 27 precursor, exons 1-3 Length = 1821 Score = 46.1 bits (23), Expect = 0.071 Identities = 26/27 (96%) Strand = Plus / Minus Query: 272 catgaggttgcggtagtagccgttgtc 298 ||||||||||||| ||||||||||||| Sbjct: 1626 catgaggttgcggaagtagccgttgtc 1600 Score = 40.1 bits (20), Expect = 4.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 111 ccgctggaggcagtgagcgggctgacgttgcc 142 ||||||||| | ||||||||||||| |||||| Sbjct: 1787 ccgctggagccggtgagcgggctgatgttgcc 1756
>ref|XM_949304.1| Theileria annulata strain Ankara eukaryotic translation initiation factor 2 subunit gamma (TA21190) partial mRNA Length = 1389 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 58 atgtaaatcaatcaaatcaaga 79 |||||||||||||||||||||| Sbjct: 912 atgtaaatcaatcaaatcaaga 933
>gb|AC111653.8| Rattus norvegicus 2 BAC CH230-108E11 (Children's Hospital Oakland Research Institute) complete sequence Length = 247105 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 tatgtatgtaaatcaatcaaa 73 ||||||||||||||||||||| Sbjct: 115460 tatgtatgtaaatcaatcaaa 115480
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 138 ttgccgaggttgatcatggag 158 ||||||||||||||||||||| Sbjct: 2609196 ttgccgaggttgatcatggag 2609176
>gb|AC153361.5| Mus musculus BAC clone RP23-291L20 from chromosome 10, complete sequence Length = 212761 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 tcaatcaaatcaagaattgac 85 ||||||||||||||||||||| Sbjct: 150505 tcaatcaaatcaagaattgac 150525
>emb|AL390758.6| Human DNA sequence from clone RP11-540C21 on chromosome 10, complete sequence Length = 15250 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 caccaacgaattagaaaactgtta 24 |||||| ||||||||||||||||| Sbjct: 9877 caccaaggaattagaaaactgtta 9854
>emb|AL022344.3|HSY214H10 Human DNA sequence from clone XX-Y214H10 on chromosome 10 Contains a vomeronasal receptor (V1R) pseudogene, a cubilin (intrinsic factor-cobalamin receptor) (CUBN) pseudogene, gene KIAA0187, two novel genes, the gene for a novel protein similar to Ras suppressor protein 1 (RSU1) and four CpG islands, complete sequence Length = 197864 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 caccaacgaattagaaaactgtta 24 |||||| ||||||||||||||||| Sbjct: 99804 caccaaggaattagaaaactgtta 99827
>gb|AC124148.15| Pan troglodytes clone rp43-71k6, complete sequence Length = 194187 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 caccaacgaattagaaaactgtta 24 |||||| ||||||||||||||||| Sbjct: 104834 caccaaggaattagaaaactgtta 104811
>gb|AC125391.10| Pan troglodytes clone rp43-115b1, complete sequence Length = 155629 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 caccaacgaattagaaaactgtta 24 |||||| ||||||||||||||||| Sbjct: 64193 caccaaggaattagaaaactgtta 64170
>gb|AC123978.5| Papio anubis clone rp41-211d5, complete sequence Length = 180097 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 caccaacgaattagaaaactgtta 24 |||||| ||||||||||||||||| Sbjct: 118651 caccaaggaattagaaaactgtta 118628
>ref|XM_691279.1| PREDICTED: Danio rerio similar to Zinc finger protein 386 (Kruppel-like) (LOC567968), mRNA Length = 2149 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tgcaatccagcctgatctcc 110 |||||||||||||||||||| Sbjct: 853 tgcaatccagcctgatctcc 872
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 cggcaaagtcggccaaaaag 179 |||||||||||||||||||| Sbjct: 1999795 cggcaaagtcggccaaaaag 1999776
>dbj|AP005613.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0082C09 Length = 160665 Score = 40.1 bits (20), Expect = 4.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 276 aggttgcggtagtagccgttgtcaaactcgtt 307 ||||||||||||||| ||||||| ||| |||| Sbjct: 61913 aggttgcggtagtaggcgttgtcgaacacgtt 61882
>gb|BC091926.1| Danio rerio cDNA clone IMAGE:7155574 Length = 2190 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tgcaatccagcctgatctcc 110 |||||||||||||||||||| Sbjct: 861 tgcaatccagcctgatctcc 880
>dbj|AK108037.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-C10, full insert sequence Length = 1326 Score = 40.1 bits (20), Expect = 4.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 276 aggttgcggtagtagccgttgtcaaactcgtt 307 ||||||||||||||| ||||||| ||| |||| Sbjct: 914 aggttgcggtagtaggcgttgtcgaacacgtt 883
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 gcgcaccagggagtccacctgccc 226 |||||||||| ||||||||||||| Sbjct: 3956777 gcgcaccaggaagtccacctgccc 3956800
>tpe|BN000559.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx30 gene for class III peroxidase 30 precursor, exons 1-2 Length = 1059 Score = 40.1 bits (20), Expect = 4.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 276 aggttgcggtagtagccgttgtcaaactcgtt 307 ||||||||||||||| ||||||| ||| |||| Sbjct: 854 aggttgcggtagtaggcgttgtcgaacacgtt 823
>emb|BX005288.7| Zebrafish DNA sequence from clone DKEY-56E3 in linkage group 1, complete sequence Length = 61796 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 tgcaatccagcctgatctcc 110 |||||||||||||||||||| Sbjct: 47194 tgcaatccagcctgatctcc 47175 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,747,234 Number of Sequences: 3902068 Number of extensions: 2747234 Number of successful extensions: 65041 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64863 Number of HSP's gapped (non-prelim): 178 length of query: 330 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 308 effective length of database: 17,147,199,772 effective search space: 5281337529776 effective search space used: 5281337529776 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)