ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart25g09 |
|---|---|
| Clone Library Name | barley_pub |
>RL18_ARATH (P42791) 60S ribosomal protein L18| Length = 187 Score = 129 bits (325), Expect = 1e-30 Identities = 60/68 (88%), Positives = 66/68 (97%) Frame = -1 Query: 408 LTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGR 229 LTFDQLALRAPLGQNT+LLRGPKN+REAV+HFG APGVPHSH+KPYVR+KGRKFEKARG+ Sbjct: 120 LTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGK 179 Query: 228 RNSRGFKV 205 R SRGFKV Sbjct: 180 RKSRGFKV 187
>RL18_CICAR (O65729) 60S ribosomal protein L18 (Fragment)| Length = 183 Score = 120 bits (301), Expect = 8e-28 Identities = 59/68 (86%), Positives = 63/68 (92%) Frame = -1 Query: 408 LTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGR 229 LTFDQLALR PL +T+LLRGPKNAREAV+HFG APGVPHSHTKPYVRSKGRKFEKARGR Sbjct: 117 LTFDQLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGR 175 Query: 228 RNSRGFKV 205 R SRGF+V Sbjct: 176 RKSRGFRV 183
>RL18_RAT (P12001) 60S ribosomal protein L18| Length = 187 Score = 112 bits (279), Expect = 3e-25 Identities = 51/67 (76%), Positives = 57/67 (85%) Frame = -1 Query: 408 LTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGR 229 LTFDQLAL +P G+ T+LL GP+ RE RHFGKAPG PHSHTKPYVRSKGRKFE+ARGR Sbjct: 120 LTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGR 179 Query: 228 RNSRGFK 208 R SRG+K Sbjct: 180 RASRGYK 186
>RL18_MOUSE (P35980) 60S ribosomal protein L18| Length = 187 Score = 112 bits (279), Expect = 3e-25 Identities = 51/67 (76%), Positives = 57/67 (85%) Frame = -1 Query: 408 LTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGR 229 LTFDQLAL +P G+ T+LL GP+ RE RHFGKAPG PHSHTKPYVRSKGRKFE+ARGR Sbjct: 120 LTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGR 179 Query: 228 RNSRGFK 208 R SRG+K Sbjct: 180 RASRGYK 186
>RL18_ICTPU (Q90YV0) 60S ribosomal protein L18| Length = 187 Score = 112 bits (279), Expect = 3e-25 Identities = 50/67 (74%), Positives = 57/67 (85%) Frame = -1 Query: 408 LTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGR 229 +TFDQLA+ P GQ T+LL GP+ ARE RHFGKAPG PHSHTKPY+RSKGRKFE+ARGR Sbjct: 120 MTFDQLAVTTPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYIRSKGRKFERARGR 179 Query: 228 RNSRGFK 208 R SRG+K Sbjct: 180 RASRGYK 186
>RL18B_XENLA (P02412) 60S ribosomal protein L18-B (L14B)| Length = 187 Score = 111 bits (278), Expect = 4e-25 Identities = 52/67 (77%), Positives = 57/67 (85%) Frame = -1 Query: 408 LTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGR 229 +TFDQLAL AP GQNT+LL GP+ ARE RHFGKAPG PHS TKPYV SKGRKFE+ARGR Sbjct: 120 MTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPGTPHSRTKPYVLSKGRKFERARGR 179 Query: 228 RNSRGFK 208 R SRG+K Sbjct: 180 RASRGYK 186
>RL18_ORENI (P69091) 60S ribosomal protein L18| Length = 187 Score = 110 bits (276), Expect = 6e-25 Identities = 51/67 (76%), Positives = 57/67 (85%) Frame = -1 Query: 408 LTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGR 229 +TFDQLAL +P GQ T+LL GP+ ARE RHFGKAPG PHSHTKPYVRSKGRKFE+ARGR Sbjct: 120 MTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGR 179 Query: 228 RNSRGFK 208 R S G+K Sbjct: 180 RASCGYK 186
>RL18_OREMO (P69090) 60S ribosomal protein L18| Length = 187 Score = 110 bits (276), Expect = 6e-25 Identities = 51/67 (76%), Positives = 57/67 (85%) Frame = -1 Query: 408 LTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGR 229 +TFDQLAL +P GQ T+LL GP+ ARE RHFGKAPG PHSHTKPYVRSKGRKFE+ARGR Sbjct: 120 MTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGR 179 Query: 228 RNSRGFK 208 R S G+K Sbjct: 180 RASCGYK 186
>RL18_HUMAN (Q07020) 60S ribosomal protein L18| Length = 187 Score = 109 bits (273), Expect = 1e-24 Identities = 51/67 (76%), Positives = 56/67 (83%) Frame = -1 Query: 408 LTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGR 229 LTFDQLAL +P G T+LL GP+ RE RHFGKAPG PHSHTKPYVRSKGRKFE+ARGR Sbjct: 120 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGR 179 Query: 228 RNSRGFK 208 R SRG+K Sbjct: 180 RASRGYK 186
>RL18A_XENLA (P09897) 60S ribosomal protein L18-A (L14A)| Length = 187 Score = 109 bits (272), Expect = 2e-24 Identities = 51/67 (76%), Positives = 56/67 (83%) Frame = -1 Query: 408 LTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGR 229 +TFDQLAL AP GQNT+LL GP+ ARE RHFGKAP PHS TKPYV SKGRKFE+ARGR Sbjct: 120 MTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPSTPHSRTKPYVLSKGRKFERARGR 179 Query: 228 RNSRGFK 208 R SRG+K Sbjct: 180 RASRGYK 186
>RL18B_SCHPO (Q8TFH1) 60S ribosomal protein L18-B| Length = 187 Score = 97.4 bits (241), Expect = 7e-21 Identities = 49/68 (72%), Positives = 53/68 (77%) Frame = -1 Query: 408 LTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGR 229 LT DQLALRAP G NT+LLRG K+AREA RHFG PH H PYVRS+GRKFE+ARGR Sbjct: 123 LTLDQLALRAPTGSNTVLLRGKKHAREAYRHFGFG---PHKHKAPYVRSEGRKFERARGR 179 Query: 228 RNSRGFKV 205 R SR FKV Sbjct: 180 RKSRAFKV 187
>RL18A_SCHPO (Q10192) 60S ribosomal protein L18-A| Length = 187 Score = 96.3 bits (238), Expect = 2e-20 Identities = 48/68 (70%), Positives = 53/68 (77%) Frame = -1 Query: 408 LTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGR 229 LT DQLALRAP G NT+L+RG K+AREA RHFG PH H PYVRS+GRKFE+ARGR Sbjct: 123 LTLDQLALRAPTGSNTVLVRGKKHAREAYRHFGFG---PHKHKAPYVRSEGRKFERARGR 179 Query: 228 RNSRGFKV 205 R SR FKV Sbjct: 180 RKSRAFKV 187
>RL18_YEAST (P07279) 60S ribosomal protein L18 (RP28)| Length = 186 Score = 92.8 bits (229), Expect = 2e-19 Identities = 45/68 (66%), Positives = 53/68 (77%) Frame = -1 Query: 408 LTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGR 229 +T DQLA+RAP GQNTL+LRGP+N+REAVRHFG PH P + S GRKFE+ARGR Sbjct: 122 ITLDQLAVRAPKGQNTLILRGPRNSREAVRHFGMG---PHKGKAPRILSTGRKFERARGR 178 Query: 228 RNSRGFKV 205 R S+GFKV Sbjct: 179 RRSKGFKV 186
>RL18_TRYBB (P50885) 60S ribosomal protein L18| Length = 193 Score = 76.3 bits (186), Expect = 2e-14 Identities = 36/63 (57%), Positives = 51/63 (80%) Frame = -1 Query: 408 LTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGR 229 LTFDQLA+ AP G+NT+LLRG K+ RE+V+HFG A GVP SH KP+V S+G++ +++ R Sbjct: 128 LTFDQLAMMAPTGKNTMLLRGRKSGRESVKHFG-AAGVPGSHAKPHVSSRGKERQRSSKR 186 Query: 228 RNS 220 R++ Sbjct: 187 RHA 189
>RL18_SALSA (P24558) 60S ribosomal protein L18| Length = 179 Score = 51.6 bits (122), Expect = 4e-07 Identities = 26/49 (53%), Positives = 32/49 (65%) Frame = -1 Query: 408 LTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRS 262 + F LAL AP Q ++LL P+NAR+ RHF AP +P HTKPYV S Sbjct: 119 MRFVGLALAAPNRQKSVLLSAPRNARDVSRHFANAPSIP--HTKPYVLS 165
>MRE11_NEUCR (Q9C291) Double-strand break repair protein mus-23 (Recombinational| repair protein mus-23) Length = 760 Score = 30.8 bits (68), Expect = 0.80 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 6/76 (7%) Frame = -1 Query: 324 VRHFGKAPGVPHSHTKPYVRSKGRK------FEKARGRRNSRGFKV*AVEFWAPPCRILL 163 V +FG+ P + H KP + KGR R R R F+ V F+ P + Sbjct: 166 VNYFGRVPEADNIHVKPILLQKGRTKMALYGLSNVRDERMHRTFRDNKVRFYRPNQQ--- 222 Query: 162 LSVYYHHLFGYQNHTA 115 + +++ L +QNH A Sbjct: 223 KNDWFNLLALHQNHYA 238
>JAG2_RAT (P97607) Jagged-2 (Jagged2) (Fragment)| Length = 1202 Score = 30.8 bits (68), Expect = 0.80 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -3 Query: 115 FRCQCPVSMSSQNQLIRVSLFCNLRPCLQASYEYH 11 FRC CP +S + V L+C PCL + Y+ Sbjct: 474 FRCHCPRGLSGPLCEVDVDLWCEPNPCLNGARCYN 508
>MATK_MUSLA (Q8HV04) Maturase K (Intron maturase)| Length = 511 Score = 30.4 bits (67), Expect = 1.0 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 2/95 (2%) Frame = -1 Query: 279 KPYVRSKGRKFEKARGRRNSRGFKV*AVEFWAPPCRILL--LSVYYHHLFGYQNHTALDV 106 K + S+G F+ + + + F FW+ PCRI + LS Y + GY + ++ Sbjct: 287 KAILGSRGTHFQMKKWKCHFVNFWQYYYHFWSQPCRIHINQLSNYSFYFRGYLSSVLINS 346 Query: 105 SVLCQ*VLRTS*FVFRCFAT*DHACKPVMNIISST 1 S + +L S F+ F P++ ++ S+ Sbjct: 347 SAVRNQMLENS-FIMDIFTKKFDTIVPIIPLVRSS 380
>TIM50_YARLI (Q6CDV7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 466 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = -1 Query: 348 GPKNAREAVRHFGKAPGVPHSHTKP 274 GPKN EAV G P VP T+P Sbjct: 440 GPKNLSEAVSSIGSLPPVPQQPTEP 464
>Y1534_SYNY3 (P74220) Hypothetical protein slr1534| Length = 301 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%) Frame = +1 Query: 223 VPPSSCLLEFPALGADIWLGVAVWHSWSFAKV-----PNSFPGVLGTPQEKR 363 V PS L E AD+ GV +W SW + + N F + GT Q++R Sbjct: 23 VSPSGSLREL----ADLQKGVDIWRSWGYEVIFSQGYHNRFGYLAGTDQQRR 70
>BRPF1_HUMAN (P55201) Peregrin (Bromodomain and PHD finger-containing protein 1)| (BR140 protein) Length = 1214 Score = 28.9 bits (63), Expect = 3.0 Identities = 14/43 (32%), Positives = 19/43 (44%) Frame = -3 Query: 307 SSRSATQPHQAICPLQGQEIREGKRKEEQQGLQGLSCGILGTP 179 SSR + PH A C GQ + Q+ +GL + TP Sbjct: 840 SSRGSLTPHPAACDKDGQTDSAAEESSSQETSKGLGPNMSSTP 882
>ZN232_HUMAN (Q9UNY5) Zinc finger protein 232 (Zinc finger and SCAN| domain-containing protein 11) Length = 417 Score = 28.9 bits (63), Expect = 3.0 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Frame = -1 Query: 399 DQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGR--KFEKARGRR 226 + LAL+ GQ +++ GPK ++ + + PG HS ++ R + R ++++ G R Sbjct: 9 ETLALQGTQGQEKMMMMGPKEEEQSCEYETRLPG-NHSTSQEIFRQRFRHLRYQETPGPR 67 Query: 225 NS 220 + Sbjct: 68 EA 69
>RPOC_PORCN (O33431) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 1159 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = +1 Query: 271 IWLGVAVWHSWSFAKVPNSFPGVLGTPQEK 360 I L V V H W F +PN +LG P +K Sbjct: 29 IALEVPVAHIWFFRSIPNKIAYLLGIPSKK 58
>RDRP_TACV (P20430) RNA-directed RNA polymerase (EC 2.7.7.48)| Length = 2210 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = -2 Query: 164 CYRFIIITFLGTRIIPL*MSVSCVNEF 84 CY F++ L + + PL MS SC+ F Sbjct: 1830 CYNFMVQIILSSMVNPLVMSTSCLKSF 1856
>VG58_BPMD2 (O64249) Gene 58 protein (Gp58)| Length = 129 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/47 (25%), Positives = 20/47 (42%) Frame = -3 Query: 313 WQSSRSATQPHQAICPLQGQEIREGKRKEEQQGLQGLSCGILGTPVS 173 W + ++ +CP G E + QG L+CG+ G +S Sbjct: 17 WDPPPDHYEWNKCLCPFHGDETPSAAVSYDLQGFNCLACGVRGDVIS 63
>MATK_UMBCA (Q9GHM0) Maturase K (Intron maturase)| Length = 507 Score = 28.1 bits (61), Expect = 5.2 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 10/77 (12%) Frame = -1 Query: 273 YVRSKGRKFEKARGRRNS-RGFKV*AVEFW-------APPCRILLLSVYYH--HLFGYQN 124 YVR +G+ +RG R + +K V FW + P RI + +Y H + GY + Sbjct: 278 YVRYQGKSILASRGARLLIKKWKSHLVNFWQCHFDLWSQPARIHIKQLYNHPFYFLGYLS 337 Query: 123 HTALDVSVLCQ*VLRTS 73 L+ SV+ +L S Sbjct: 338 SVRLNSSVIRSQMLENS 354
>MATK_LINBE (Q9GHV0) Maturase K (Intron maturase)| Length = 507 Score = 28.1 bits (61), Expect = 5.2 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 10/77 (12%) Frame = -1 Query: 273 YVRSKGRKFEKARGRRNS-RGFKV*AVEFW-------APPCRILLLSVYYH--HLFGYQN 124 YVR +G+ +RG R + +K V FW + P RI + +Y H + GY + Sbjct: 278 YVRYQGKSILASRGARLLIKKWKSHLVNFWQCHFDLWSQPARIHIKQLYNHPFYFLGYLS 337 Query: 123 HTALDVSVLCQ*VLRTS 73 L+ SV+ +L S Sbjct: 338 SVRLNSSVIRSQMLENS 354
>VG58_BPML5 (Q05271) Gene 58 protein (Gp58)| Length = 130 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/47 (23%), Positives = 21/47 (44%) Frame = -3 Query: 313 WQSSRSATQPHQAICPLQGQEIREGKRKEEQQGLQGLSCGILGTPVS 173 W+ + ++ +CP G E + QG ++CG+ G +S Sbjct: 17 WEPPPDHHEWNKCLCPFHGDETPSAAVSYDLQGYNCMACGVRGDVIS 63
>PHAR1_XENLA (Q6GLU8) Phosphatase and actin regulator 1| Length = 586 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/59 (32%), Positives = 29/59 (49%) Frame = +1 Query: 55 TTKHELTGSENSLTQDTDI*SGMILVPKKVMIINR*QQNTTRGCPKFHSLNLEAPAVPP 231 T +L+ SL+QD M+L PKK + Q++T K +L + PA+PP Sbjct: 173 TVSEDLSSEPGSLSQDPSYKPAMLLPPKKTVGFPVDQEDTP---VKQITLLKQPPALPP 228
>KITH_BHV16 (P24096) Thymidine kinase (EC 2.7.1.21)| Length = 357 Score = 27.7 bits (60), Expect = 6.8 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Frame = -2 Query: 326 LLGTLAKLQECHTATPSHMSAPRAGNSRRQEEGGTA----GASRFKLWNFGHPRV 174 L G LA C A+ A RAG RR+ GG G R + NF RV Sbjct: 59 LSGILAASARCAAASHGSARARRAGAPRRRGRGGPGCVLPGQVRGPVLNFARARV 113
>CEP68_PONPY (Q5RCQ2) Centrosomal protein of 68 kDa (Cep68 protein)| Length = 751 Score = 27.3 bits (59), Expect = 8.9 Identities = 23/85 (27%), Positives = 33/85 (38%) Frame = -3 Query: 379 SAWTEHASPEGSQERQGSC*ALWQSSRSATQPHQAICPLQGQEIREGKRKEEQQGLQGLS 200 S W SP + + SC S+ S+ Q HQ + E R G + L+ Sbjct: 172 SQWKSMPSPGSAAPQPSSCSVSASSTGSSLQGHQ-----ERTEPRGGSLAKVSSSLE--- 223 Query: 199 CGILGTPVSYFAVIGLLSSPFWVPE 125 L P +V+GL P W P+ Sbjct: 224 ---LVVPQEPSSVVGLGPRPQWSPQ 245
>JTB_BRUMA (O77049) Protein JTB precursor| Length = 146 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/24 (37%), Positives = 14/24 (58%) Frame = +3 Query: 246 RISCPWSGHMAWCGCVALLELCQS 317 R+ P GH+ W C L+LC++ Sbjct: 7 RLGLPRGGHLCWLLCAFTLKLCEA 30 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,831,798 Number of Sequences: 219361 Number of extensions: 1390620 Number of successful extensions: 4016 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 3889 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4010 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
