Clone Name | rbart25g07 |
---|---|
Clone Library Name | barley_pub |
>gb|U93560.1|ZMU93560 Zea mays glutamate dehydrogenase mutant (GDH1) mRNA, complete cds Length = 1236 Score = 180 bits (91), Expect = 2e-42 Identities = 157/179 (87%) Strand = Plus / Minus Query: 238 gaggacggtggcgcgggcgacgcggttgacgccgagggtgaaggcgcccatgcggaggtc 297 ||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 1218 gaggacggtggcgcgcgcgacgcggttgacgcccagcgtgaaggcgcccatgcggaggtc 1159 Query: 298 gcagtggtgggagcggcacatctccttggtgtcccggaaggcgcgggtcatgtacgtctt 357 |||| |||| |||||||||| ||| ||| | ||||||||| ||||||||||||| Sbjct: 1158 gcagctgtggctccggcacatctgcttcacgtctccgaaggcgcgcgtcatgtacgtctg 1099 Query: 358 gagctcccggttcaccttctcctcgtcccacatgaacccctggatgttctgcacccact 416 |||||| ||| ||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 1098 cagctccgcgtttaccttctcctcgtcccacatgaacccctggatgttttgtacccact 1040
>gb|AY106054.1| Zea mays PCO074386 mRNA sequence Length = 1642 Score = 172 bits (87), Expect = 6e-40 Identities = 156/179 (87%) Strand = Plus / Minus Query: 238 gaggacggtggcgcgggcgacgcggttgacgccgagggtgaaggcgcccatgcggaggtc 297 ||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 1353 gaggacggtggcgcgcgcgacgcggttgacgccaagcgtgaaggcgcccatgcggaggtc 1294 Query: 298 gcagtggtgggagcggcacatctccttggtgtcccggaaggcgcgggtcatgtacgtctt 357 |||| |||| |||||||||| ||| ||||| ||||||||| |||||||||||| Sbjct: 1293 gcagctgtggctccggcacatctgcttcacgtccccgaaggcgcgcgtcatgtacgtccg 1234 Query: 358 gagctcccggttcaccttctcctcgtcccacatgaacccctggatgttctgcacccact 416 |||||| ||| |||||||| |||||||||||||||||||||||||| || ||||||| Sbjct: 1233 cagctccgcgtttaccttctcttcgtcccacatgaacccctggatgttttgtacccact 1175
>gb|U93561.1|ZMU93561 Zea mays glutamate dehydrogenase (GDH1) mRNA, complete cds Length = 1236 Score = 172 bits (87), Expect = 6e-40 Identities = 156/179 (87%) Strand = Plus / Minus Query: 238 gaggacggtggcgcgggcgacgcggttgacgccgagggtgaaggcgcccatgcggaggtc 297 ||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 1218 gaggacggtggcgcgcgcgacgcggttgacgcccagcgtgaaggcgcccatgcggaggtc 1159 Query: 298 gcagtggtgggagcggcacatctccttggtgtcccggaaggcgcgggtcatgtacgtctt 357 |||| |||| |||||||||| ||| ||| | ||||||||| |||||||||||| Sbjct: 1158 gcagctgtggctccggcacatctgcttcacgtctccgaaggcgcgcgtcatgtacgtccg 1099 Query: 358 gagctcccggttcaccttctcctcgtcccacatgaacccctggatgttctgcacccact 416 |||||| ||| ||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 1098 cagctccgcgtttaccttctcctcgtcccacatgaacccctggatgttttgtacccact 1040
>ref|XM_469970.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1615 Score = 165 bits (83), Expect = 1e-37 Identities = 152/175 (86%) Strand = Plus / Minus Query: 242 acggtggcgcgggcgacgcggttgacgccgagggtgaaggcgcccatgcggaggtcgcag 301 ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1284 acggtggcgcgagcgacacggttgacaccgagggtgaaggcgcccatgcggaggtcgcag 1225 Query: 302 tggtgggagcggcacatctccttggtgtcccggaaggcgcgggtcatgtacgtcttgagc 361 |||||| | |||||||||||| |||| ||| | ||||||||||| ||||| ||| Sbjct: 1224 tggtggctcctgcacatctccttcacatccctgaacccacgggtcatgtaggtcttcagc 1165 Query: 362 tcccggttcaccttctcctcgtcccacatgaacccctggatgttctgcacccact 416 || ||||||||||||||||||||||||||| ||||| |||||||| ||||||| Sbjct: 1164 tcattgttcaccttctcctcgtcccacatgaaaccctgaatgttctgaacccact 1110
>ref|XM_507557.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0060J21.2 mRNA Length = 1684 Score = 165 bits (83), Expect = 1e-37 Identities = 152/175 (86%) Strand = Plus / Minus Query: 242 acggtggcgcgggcgacgcggttgacgccgagggtgaaggcgcccatgcggaggtcgcag 301 ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1353 acggtggcgcgagcgacacggttgacaccgagggtgaaggcgcccatgcggaggtcgcag 1294 Query: 302 tggtgggagcggcacatctccttggtgtcccggaaggcgcgggtcatgtacgtcttgagc 361 |||||| | |||||||||||| |||| ||| | ||||||||||| ||||| ||| Sbjct: 1293 tggtggctcctgcacatctccttcacatccctgaacccacgggtcatgtaggtcttcagc 1234 Query: 362 tcccggttcaccttctcctcgtcccacatgaacccctggatgttctgcacccact 416 || ||||||||||||||||||||||||||| ||||| |||||||| ||||||| Sbjct: 1233 tcattgttcaccttctcctcgtcccacatgaaaccctgaatgttctgaacccact 1179
>ref|XM_507076.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0060J21.2 mRNA Length = 1617 Score = 165 bits (83), Expect = 1e-37 Identities = 152/175 (86%) Strand = Plus / Minus Query: 242 acggtggcgcgggcgacgcggttgacgccgagggtgaaggcgcccatgcggaggtcgcag 301 ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1286 acggtggcgcgagcgacacggttgacaccgagggtgaaggcgcccatgcggaggtcgcag 1227 Query: 302 tggtgggagcggcacatctccttggtgtcccggaaggcgcgggtcatgtacgtcttgagc 361 |||||| | |||||||||||| |||| ||| | ||||||||||| ||||| ||| Sbjct: 1226 tggtggctcctgcacatctccttcacatccctgaacccacgggtcatgtaggtcttcagc 1167 Query: 362 tcccggttcaccttctcctcgtcccacatgaacccctggatgttctgcacccact 416 || ||||||||||||||||||||||||||| ||||| |||||||| ||||||| Sbjct: 1166 tcattgttcaccttctcctcgtcccacatgaaaccctgaatgttctgaacccact 1112
>gb|AY332470.1| Oryza sativa (japonica cultivar-group) glutamate dehydrogenase (GDH) mRNA, complete cds Length = 1416 Score = 165 bits (83), Expect = 1e-37 Identities = 152/175 (86%) Strand = Plus / Minus Query: 242 acggtggcgcgggcgacgcggttgacgccgagggtgaaggcgcccatgcggaggtcgcag 301 ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1284 acggtggcgcgagcgacacggttgacaccgagggtgaaggcgcccatgcggaggtcgcag 1225 Query: 302 tggtgggagcggcacatctccttggtgtcccggaaggcgcgggtcatgtacgtcttgagc 361 |||||| | |||||||||||| |||| ||| | ||||||||||| ||||| ||| Sbjct: 1224 tggtggctcctgcacatctccttcacatccctgaacccacgggtcatgtaggtcttcagc 1165 Query: 362 tcccggttcaccttctcctcgtcccacatgaacccctggatgttctgcacccact 416 || ||||||||||||||||||||||||||| ||||| |||||||| ||||||| Sbjct: 1164 tcattgttcaccttctcctcgtcccacatgaaaccctgaatgttctgaacccact 1110
>dbj|AB024962.1| Oryza sativa (japonica cultivar-group) GDH1 mRNA for glutamate dehydrogenase 1, complete cds Length = 1550 Score = 165 bits (83), Expect = 1e-37 Identities = 152/175 (86%) Strand = Plus / Minus Query: 242 acggtggcgcgggcgacgcggttgacgccgagggtgaaggcgcccatgcggaggtcgcag 301 ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1227 acggtggcgcgagcgacacggttgacaccgagggtgaaggcgcccatgcggaggtcgcag 1168 Query: 302 tggtgggagcggcacatctccttggtgtcccggaaggcgcgggtcatgtacgtcttgagc 361 |||||| | |||||||||||| |||| ||| | ||||||||||| ||||| ||| Sbjct: 1167 tggtggctcctgcacatctccttcacatccctgaacccacgggtcatgtaggtcttcagc 1108 Query: 362 tcccggttcaccttctcctcgtcccacatgaacccctggatgttctgcacccact 416 || ||||||||||||||||||||||||||| ||||| |||||||| ||||||| Sbjct: 1107 tcattgttcaccttctcctcgtcccacatgaaaccctgaatgttctgaacccact 1053
>dbj|AK071839.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121E06, full insert sequence Length = 1682 Score = 165 bits (83), Expect = 1e-37 Identities = 152/175 (86%) Strand = Plus / Minus Query: 242 acggtggcgcgggcgacgcggttgacgccgagggtgaaggcgcccatgcggaggtcgcag 301 ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1354 acggtggcgcgagcgacacggttgacaccgagggtgaaggcgcccatgcggaggtcgcag 1295 Query: 302 tggtgggagcggcacatctccttggtgtcccggaaggcgcgggtcatgtacgtcttgagc 361 |||||| | |||||||||||| |||| ||| | ||||||||||| ||||| ||| Sbjct: 1294 tggtggctcctgcacatctccttcacatccctgaacccacgggtcatgtaggtcttcagc 1235 Query: 362 tcccggttcaccttctcctcgtcccacatgaacccctggatgttctgcacccact 416 || ||||||||||||||||||||||||||| ||||| |||||||| ||||||| Sbjct: 1234 tcattgttcaccttctcctcgtcccacatgaaaccctgaatgttctgaacccact 1180
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete sequence Length = 162497 Score = 157 bits (79), Expect = 3e-35 Identities = 145/167 (86%) Strand = Plus / Minus Query: 242 acggtggcgcgggcgacgcggttgacgccgagggtgaaggcgcccatgcggaggtcgcag 301 ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 9445 acggtggcgcgagcgacacggttgacaccgagggtgaaggcgcccatgcggaggtcgcag 9386 Query: 302 tggtgggagcggcacatctccttggtgtcccggaaggcgcgggtcatgtacgtcttgagc 361 |||||| | |||||||||||| |||| ||| | ||||||||||| ||||| ||| Sbjct: 9385 tggtggctcctgcacatctccttcacatccctgaacccacgggtcatgtaggtcttcagc 9326 Query: 362 tcccggttcaccttctcctcgtcccacatgaacccctggatgttctg 408 || ||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 9325 tcattgttcaccttctcctcgtcccacatgaaaccctgaatgttctg 9279
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 157 bits (79), Expect = 3e-35 Identities = 145/167 (86%) Strand = Plus / Plus Query: 242 acggtggcgcgggcgacgcggttgacgccgagggtgaaggcgcccatgcggaggtcgcag 301 ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 32734462 acggtggcgcgagcgacacggttgacaccgagggtgaaggcgcccatgcggaggtcgcag 32734521 Query: 302 tggtgggagcggcacatctccttggtgtcccggaaggcgcgggtcatgtacgtcttgagc 361 |||||| | |||||||||||| |||| ||| | ||||||||||| ||||| ||| Sbjct: 32734522 tggtggctcctgcacatctccttcacatccctgaacccacgggtcatgtaggtcttcagc 32734581 Query: 362 tcccggttcaccttctcctcgtcccacatgaacccctggatgttctg 408 || ||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 32734582 tcattgttcaccttctcctcgtcccacatgaaaccctgaatgttctg 32734628 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ttattcaacttttttgttga 149 |||||||||||||||||||| Sbjct: 22782117 ttattcaacttttttgttga 22782098
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 157 bits (79), Expect = 3e-35 Identities = 145/167 (86%) Strand = Plus / Plus Query: 242 acggtggcgcgggcgacgcggttgacgccgagggtgaaggcgcccatgcggaggtcgcag 301 ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 32824972 acggtggcgcgagcgacacggttgacaccgagggtgaaggcgcccatgcggaggtcgcag 32825031 Query: 302 tggtgggagcggcacatctccttggtgtcccggaaggcgcgggtcatgtacgtcttgagc 361 |||||| | |||||||||||| |||| ||| | ||||||||||| ||||| ||| Sbjct: 32825032 tggtggctcctgcacatctccttcacatccctgaacccacgggtcatgtaggtcttcagc 32825091 Query: 362 tcccggttcaccttctcctcgtcccacatgaacccctggatgttctg 408 || ||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 32825092 tcattgttcaccttctcctcgtcccacatgaaaccctgaatgttctg 32825138 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ttattcaacttttttgttga 149 |||||||||||||||||||| Sbjct: 22775145 ttattcaacttttttgttga 22775126
>dbj|D49475.1|MZEGD Corn mRNA for glutamate dehydrogenase, complete cds Length = 1621 Score = 149 bits (75), Expect = 8e-33 Identities = 153/179 (85%) Strand = Plus / Minus Query: 238 gaggacggtggcgcgggcgacgcggttgacgccgagggtgaaggcgcccatgcggaggtc 297 ||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 1338 gaggacggtggcgcgcgcgacgcggttgacgcccagcgtgaaggcgcccatgcggaggtc 1279 Query: 298 gcagtggtgggagcggcacatctccttggtgtcccggaaggcgcgggtcatgtacgtctt 357 |||| |||| |||||||||| ||| || | |||||||| || ||||||||| Sbjct: 1278 gcagctgtggctccggcacatctgcttcacgtttccaaaggcgcgcgtgatgtacgtccg 1219 Query: 358 gagctcccggttcaccttctcctcgtcccacatgaacccctggatgttctgcacccact 416 |||||| ||| ||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 1218 cagctccgcgtttaccttctcctcgtcccacatgaacccctggatgttttgtacccact 1160
>ref|NM_193999.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 339 Score = 117 bits (59), Expect = 3e-23 Identities = 101/115 (87%) Strand = Plus / Minus Query: 242 acggtggcgcgggcgacgcggttgacgccgagggtgaaggcgcccatgcggaggtcgcag 301 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 317 acggtggcgcgggccacacggttgacgccgagggtgaaggcgcccatgcggaggtcgcag 258 Query: 302 tggtgggagcggcacatctccttggtgtcccggaaggcgcgggtcatgtacgtct 356 |||||| | |||||||||||| |||| ||| ||||||||||||| |||| Sbjct: 257 tggtggctcctgcacatctccttctcatccctgaacccgcgggtcatgtaggtct 203
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 117 bits (59), Expect = 3e-23 Identities = 101/115 (87%) Strand = Plus / Plus Query: 242 acggtggcgcgggcgacgcggttgacgccgagggtgaaggcgcccatgcggaggtcgcag 301 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 14528024 acggtggcgcgggccacacggttgacgccgagggtgaaggcgcccatgcggaggtcgcag 14528083 Query: 302 tggtgggagcggcacatctccttggtgtcccggaaggcgcgggtcatgtacgtct 356 |||||| | |||||||||||| |||| ||| ||||||||||||| |||| Sbjct: 14528084 tggtggctcctgcacatctccttctcatccctgaacccgcgggtcatgtaggtct 14528138
>dbj|AP003444.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1164G11 Length = 142699 Score = 117 bits (59), Expect = 3e-23 Identities = 101/115 (87%) Strand = Plus / Plus Query: 242 acggtggcgcgggcgacgcggttgacgccgagggtgaaggcgcccatgcggaggtcgcag 301 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 9401 acggtggcgcgggccacacggttgacgccgagggtgaaggcgcccatgcggaggtcgcag 9460 Query: 302 tggtgggagcggcacatctccttggtgtcccggaaggcgcgggtcatgtacgtct 356 |||||| | |||||||||||| |||| ||| ||||||||||||| |||| Sbjct: 9461 tggtggctcctgcacatctccttctcatccctgaacccgcgggtcatgtaggtct 9515
>dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0514H03 Length = 167230 Score = 117 bits (59), Expect = 3e-23 Identities = 101/115 (87%) Strand = Plus / Plus Query: 242 acggtggcgcgggcgacgcggttgacgccgagggtgaaggcgcccatgcggaggtcgcag 301 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 87337 acggtggcgcgggccacacggttgacgccgagggtgaaggcgcccatgcggaggtcgcag 87396 Query: 302 tggtgggagcggcacatctccttggtgtcccggaaggcgcgggtcatgtacgtct 356 |||||| | |||||||||||| |||| ||| ||||||||||||| |||| Sbjct: 87397 tggtggctcctgcacatctccttctcatccctgaacccgcgggtcatgtaggtct 87451
>ref|XM_467072.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1424 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 345 tcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaacccctggatgt 404 |||||||| | | |||||||| |||||||||||| || ||||||||||| ||||| |||| Sbjct: 1227 tcatgtacttttggagctccctgttcaccttctcttcatcccacatgaagccctgaatgt 1168 Query: 405 tctgcacccact 416 |||| ||||||| Sbjct: 1167 tctgaacccact 1156
>ref|XM_473381.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1239 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 345 tcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaacccctggatgt 404 |||||||| | | ||||||| ||||||||||||||| |||||||||||||| || |||| Sbjct: 1114 tcatgtacttgtggagctccatgttcaccttctcctcatcccacatgaacccttgaatgt 1055 Query: 405 tctgcacccact 416 |||| ||||||| Sbjct: 1054 tctgaacccact 1043
>dbj|AB189166.1| Oryza sativa (japonica cultivar-group) OsGDH2 mRNA for glutamate dehydrogenase 2, complete cds Length = 1835 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 345 tcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaacccctggatgt 404 |||||||| | | ||||||| ||||||||||||||| |||||||||||||| || |||| Sbjct: 1358 tcatgtacttgtggagctccatgttcaccttctcctcatcccacatgaacccttgaatgt 1299 Query: 405 tctgcacccact 416 |||| ||||||| Sbjct: 1298 tctgaacccact 1287
>dbj|AB035927.1| Oryza sativa (japonica cultivar-group) GDH3 mRNA for glutamate dehydrogenase 3, complete cds Length = 1452 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 345 tcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaacccctggatgt 404 |||||||| | | |||||||| |||||||||||| || ||||||||||| ||||| |||| Sbjct: 1253 tcatgtacttttggagctccctgttcaccttctcttcatcccacatgaagccctgaatgt 1194 Query: 405 tctgcacccact 416 |||| ||||||| Sbjct: 1193 tctgaacccact 1182
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 345 tcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaacccctggatgt 404 |||||||| | | |||||||| |||||||||||| || ||||||||||| ||||| |||| Sbjct: 26261276 tcatgtacttttggagctccctgttcaccttctcttcatcccacatgaagccctgaatgt 26261217 Query: 405 tctgcacc 412 |||||||| Sbjct: 26261216 tctgcacc 26261209
>dbj|AP007203.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0012J10 Length = 132375 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 345 tcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaacccctggatgt 404 |||||||| | | |||||||| |||||||||||| || ||||||||||| ||||| |||| Sbjct: 84117 tcatgtacttttggagctccctgttcaccttctcttcatcccacatgaagccctgaatgt 84058 Query: 405 tctgcacc 412 |||||||| Sbjct: 84057 tctgcacc 84050
>dbj|AK103028.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117C02, full insert sequence Length = 1424 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 345 tcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaacccctggatgt 404 |||||||| | | |||||||| |||||||||||| || ||||||||||| ||||| |||| Sbjct: 1227 tcatgtacttttggagctccctgttcaccttctcttcatcccacatgaagccctgaatgt 1168 Query: 405 tctgcacccact 416 |||| ||||||| Sbjct: 1167 tctgaacccact 1156
>dbj|AK063467.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-H11, full insert sequence Length = 1884 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 345 tcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaacccctggatgt 404 |||||||| | | ||||||| ||||||||||||||| |||||||||||||| || |||| Sbjct: 1449 tcatgtacttgtggagctccatgttcaccttctcctcatcccacatgaacccttgaatgt 1390 Query: 405 tctgcacccact 416 |||| ||||||| Sbjct: 1389 tctgaacccact 1378
>ref|NM_111262.1| Arabidopsis thaliana oxidoreductase AT3G03910 mRNA, complete cds Length = 1479 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 339 cgcgggtcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaacccct 398 |||| |||||||| ||||| ||||||| |||||||| ||||| ||||||||||| || | Sbjct: 1188 cgcgagtcatgtaggtctttagctccctattcaccttttcctcatcccacatgaatcctt 1129 Query: 399 ggatgttctgcacccact 416 | |||||||| ||||||| Sbjct: 1128 gtatgttctgaacccact 1111
>gb|AY681352.1| Lupinus luteus glutamate dehydrogenase 1 (GDH1) mRNA, complete cds Length = 1405 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 367 gttcaccttctcctcgtcccacatgaacccctggatgttctgcacccact 416 |||||||||||| || |||||||||||||| || |||||||||||||||| Sbjct: 1132 gttcaccttctcttcatcccacatgaacccttgtatgttctgcacccact 1083
>emb|AJ879895.1| Glycine max mRNA for glutamate dehydrogenase 1 (gdh1 gene) Length = 1635 Score = 67.9 bits (34), Expect = 2e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 343 ggtcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaacccctggat 402 ||||||||| ||||| ||||| |||||| |||||||| ||||||||||| || ||||| Sbjct: 1275 ggtcatgtaggtctttagctcattgttcactttctcctcatcccacatgaaaccttggat 1216 Query: 403 gttctgcacccact 416 |||||| ||||||| Sbjct: 1215 gttctgaacccact 1202
>dbj|AB236412.1| Brassica napus gdh2 gene for glutamate dehydrogenase 2, complete cds Length = 3628 Score = 67.9 bits (34), Expect = 2e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 335 aaggcgcgggtcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaac 394 ||||| || ||||||||| ||| |||||| ||||||| || ||||| |||||||||||| Sbjct: 3438 aaggcacgagtcatgtacttctgcagctccaggttcactttttcctcttcccacatgaac 3379 Query: 395 ccctggatgttctgcacccact 416 || || |||||||| ||||||| Sbjct: 3378 ccttgaatgttctggacccact 3357
>dbj|AB066298.1| Brassica napus gdh2 mRNA for glutamate dehydrogenase, complete cds Length = 1494 Score = 67.9 bits (34), Expect = 2e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 335 aaggcgcgggtcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaac 394 ||||| || ||||||||| ||| |||||| ||||||| || ||||| |||||||||||| Sbjct: 1233 aaggcacgagtcatgtacttctgcagctccaggttcactttttcctcttcccacatgaac 1174 Query: 395 ccctggatgttctgcacccact 416 || || |||||||| ||||||| Sbjct: 1173 ccttgaatgttctggacccact 1152
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 67.9 bits (34), Expect = 2e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 345 tcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaacccctggatgt 404 |||||||| | | ||||||| ||||||||||||||| |||||||||||||| || |||| Sbjct: 27211097 tcatgtacttgtggagctccatgttcaccttctcctcatcccacatgaacccttgaatgt 27211038 Query: 405 tctgca 410 |||||| Sbjct: 27211037 tctgca 27211032
>emb|AL606728.3|OSJN00102 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0038F03, complete sequence Length = 136656 Score = 67.9 bits (34), Expect = 2e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 345 tcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaacccctggatgt 404 |||||||| | | ||||||| ||||||||||||||| |||||||||||||| || |||| Sbjct: 42186 tcatgtacttgtggagctccatgttcaccttctcctcatcccacatgaacccttgaatgt 42127 Query: 405 tctgca 410 |||||| Sbjct: 42126 tctgca 42121
>emb|AJ011096.2|AOF011096 Asparagus officinalis mRNA for glutamate dehydrogenase Length = 1681 Score = 60.0 bits (30), Expect = 6e-06 Identities = 63/74 (85%) Strand = Plus / Minus Query: 343 ggtcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaacccctggat 402 ||||||||| ||||| ||||| ||| |||||||| || ||||||||||| || ||||| Sbjct: 1285 ggtcatgtaagtcttcagctcagagttgaccttctcttcatcccacatgaatccttggat 1226 Query: 403 gttctgcacccact 416 |||||| ||||||| Sbjct: 1225 gttctgaacccact 1212
>gb|AC009540.6|ATAC009540 Arabidopsis thaliana chromosome III BAC F20H23 genomic sequence, complete sequence Length = 101410 Score = 58.0 bits (29), Expect = 2e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 339 cgcgggtcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaacccct 398 |||| |||||||| ||||| ||||||| |||||||| ||||| ||||||||||| || | Sbjct: 8304 cgcgagtcatgtaggtctttagctccctattcaccttttcctcatcccacatgaatcctt 8363 Query: 399 ggatgttct 407 | ||||||| Sbjct: 8364 gtatgttct 8372
>gb|AC011698.6|ATAC011698 Arabidopsis thaliana chromosome III BAC T11I18 genomic sequence, complete sequence Length = 63654 Score = 58.0 bits (29), Expect = 2e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 339 cgcgggtcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaacccct 398 |||| |||||||| ||||| ||||||| |||||||| ||||| ||||||||||| || | Sbjct: 5368 cgcgagtcatgtaggtctttagctccctattcaccttttcctcatcccacatgaatcctt 5309 Query: 399 ggatgttct 407 | ||||||| Sbjct: 5308 gtatgttct 5300
>emb|AJ879896.1| Glycine max mRNA for glutamate dehydrogenase 2 (gdh2 gene) Length = 1500 Score = 56.0 bits (28), Expect = 9e-05 Identities = 61/72 (84%) Strand = Plus / Minus Query: 343 ggtcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaacccctggat 402 |||||||||| |||| ||||| |||||||| ||||| || ||||||||||| || || || Sbjct: 1207 ggtcatgtacttcttcagctcacggttcactttctcttcatcccacatgaaaccttgaat 1148 Query: 403 gttctgcaccca 414 ||||| ||||| Sbjct: 1147 attctgaaccca 1136
>emb|Y08293.2|NPY08293 N.plumbaginifolia mRNA for NADH glutamate dehydrogenase Length = 1574 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 260 cggttgacgccgagggtgaaggcgcccatgcggaggtcgcagt 302 ||||||||||| ||||||||||| ||||| ||||| ||||||| Sbjct: 1264 cggttgacgcctagggtgaaggcacccattcggagatcgcagt 1222 Score = 40.1 bits (20), Expect = 5.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 375 tctcctcgtcccacatgaacccctggatgttctgcaccca 414 ||||||| |||||||| || || ||||||||||| ||||| Sbjct: 1149 tctcctcatcccacataaaaccttggatgttctgaaccca 1110
>emb|AJ277950.1|NPL277950 Nicotiana plumbaginifolia partial gdhB gene for NADH-glutamate dehydrogenase, exons 1-9 Length = 2898 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 260 cggttgacgccgagggtgaaggcgcccatgcggaggtcgcagt 302 ||||||||||| ||||||||||| ||||| ||||| ||||||| Sbjct: 2858 cggttgacgcctagggtgaaggcacccattcggagatcgcagt 2816
>ref|NM_120826.2| Arabidopsis thaliana GDH2 (GLUTAMATE DEHYDROGENASE 2); oxidoreductase AT5G07440 (GDH2) mRNA, complete cds Length = 1634 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 367 gttcaccttctcctcgtcccacatgaacccctggatgttctgcacccact 416 |||||| || ||||| ||||||||||| || || |||||||||||||||| Sbjct: 1305 gttcactttttcctcttcccacatgaatccttgaatgttctgcacccact 1256
>gb|AY350714.1| Olimarabidopsis pumila clone BAC Op37I22, complete sequence Length = 84869 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 367 gttcaccttctcctcgtcccacatgaacccctggatgttctgcacccact 416 |||||| || ||||| |||||||||||||| || |||||||| ||||||| Sbjct: 42907 gttcactttttcctcttcccacatgaacccttgtatgttctgtacccact 42858
>gb|AF386976.1|AF386976 Arabidopsis thaliana glutamate dehydrogenase 2 (T2I1_150) mRNA, complete cds Length = 1686 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 367 gttcaccttctcctcgtcccacatgaacccctggatgttctgcacccact 416 |||||| || ||||| ||||||||||| || || |||||||||||||||| Sbjct: 1371 gttcactttttcctcttcccacatgaatccttgaatgttctgcacccact 1322
>emb|AL163912.1|ATT2I1 Arabidopsis thaliana DNA chromosome 5, BAC clone T2I1 (ESSA project) Length = 116763 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 367 gttcaccttctcctcgtcccacatgaacccctggatgttctgcacccact 416 |||||| || ||||| ||||||||||| || || |||||||||||||||| Sbjct: 73034 gttcactttttcctcttcccacatgaatccttgaatgttctgcacccact 72985
>gb|U56635.1|ATU56635 Arabidopsis thaliana glutamate dehydrogenase 2 (GDH2) mRNA, complete cds Length = 1620 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 367 gttcaccttctcctcgtcccacatgaacccctggatgttctgcacccact 416 |||||| || ||||| ||||||||||| || || |||||||||||||||| Sbjct: 1307 gttcactttttcctcttcccacatgaatccttgaatgttctgcacccact 1258
>emb|AJ420266.1|NTA420266 Nicotiana tabacum mRNA for glutamate dehydrogenase (gdh1 gene) Length = 1630 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 368 ttcaccttctcctcgtcccacatgaacccctggatgttctgcacccact 416 ||||| || ||||| |||||||| || |||||||||||||| ||||||| Sbjct: 1199 ttcactttatcctcatcccacataaagccctggatgttctgaacccact 1151
>gb|AY072535.1| Arabidopsis thaliana glutamate dehydrogenase 2 (T2I1_150) mRNA, complete cds Length = 1173 Score = 48.1 bits (24), Expect = 0.023 Identities = 36/40 (90%) Strand = Plus / Minus Query: 377 tcctcgtcccacatgaacccctggatgttctgcacccact 416 ||||| ||||||||||| || || |||||||||||||||| Sbjct: 1172 tcctcttcccacatgaatccttgaatgttctgcacccact 1133
>dbj|AB012246.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRG7 Length = 83948 Score = 48.1 bits (24), Expect = 0.023 Identities = 57/68 (83%) Strand = Plus / Minus Query: 344 gtcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaacccctggatg 403 |||||||| ||||| ||||| |||||||||||| || |||||||| || || || ||| Sbjct: 31630 gtcatgtaagtctttagctcatcgttcaccttctcttcctcccacataaagccttgaatg 31571 Query: 404 ttctgcac 411 |||||||| Sbjct: 31570 ttctgcac 31563
>ref|NM_121822.2| Arabidopsis thaliana GDH1 (GLUTAMATE DEHYDROGENASE 1); oxidoreductase AT5G18170 (GDH1) mRNA, complete cds Length = 1565 Score = 46.1 bits (23), Expect = 0.090 Identities = 59/71 (83%) Strand = Plus / Minus Query: 344 gtcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaacccctggatg 403 |||||||| ||||| ||||| |||||||||||| || |||||||| || || || ||| Sbjct: 1240 gtcatgtaagtctttagctcatcgttcaccttctcttcctcccacataaagccttgaatg 1181 Query: 404 ttctgcaccca 414 ||||| ||||| Sbjct: 1180 ttctgaaccca 1170
>gb|BT025561.1| Arabidopsis thaliana At5g18170 mRNA, complete cds Length = 1236 Score = 46.1 bits (23), Expect = 0.090 Identities = 59/71 (83%) Strand = Plus / Minus Query: 344 gtcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaacccctggatg 403 |||||||| ||||| ||||| |||||||||||| || |||||||| || || || ||| Sbjct: 1112 gtcatgtaagtctttagctcatcgttcaccttctcttcctcccacataaagccttgaatg 1053 Query: 404 ttctgcaccca 414 ||||| ||||| Sbjct: 1052 ttctgaaccca 1042
>gb|DQ497631.1| Vitis vinifera GDHB glutamate dehydrogenase (gdhB) mRNA, complete cds Length = 1460 Score = 46.1 bits (23), Expect = 0.090 Identities = 38/43 (88%) Strand = Plus / Minus Query: 374 ttctcctcgtcccacatgaacccctggatgttctgcacccact 416 |||||||| ||||||||||| || || |||||||| ||||||| Sbjct: 1082 ttctcctcatcccacatgaaaccttgaatgttctgaacccact 1040
>gb|AY049243.1| Arabidopsis thaliana AT5g18170/MRG7_13 mRNA, complete cds Length = 1560 Score = 46.1 bits (23), Expect = 0.090 Identities = 59/71 (83%) Strand = Plus / Minus Query: 344 gtcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaacccctggatg 403 |||||||| ||||| ||||| |||||||||||| || |||||||| || || || ||| Sbjct: 1240 gtcatgtaagtctttagctcatcgttcaccttctcttcctcccacataaagccttgaatg 1181 Query: 404 ttctgcaccca 414 ||||| ||||| Sbjct: 1180 ttctgaaccca 1170
>gb|U53527.1|ATU53527 Arabidopsis thaliana glutamate dehydrogenase 1 (GDH1) mRNA, complete cds Length = 1514 Score = 46.1 bits (23), Expect = 0.090 Identities = 59/71 (83%) Strand = Plus / Minus Query: 344 gtcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaacccctggatg 403 |||||||| ||||| ||||| |||||||||||| || |||||||| || || || ||| Sbjct: 1211 gtcatgtaagtctttagctcatcgttcaccttctcttcctcccacataaagccttgaatg 1152 Query: 404 ttctgcaccca 414 ||||| ||||| Sbjct: 1151 ttctgaaccca 1141
>gb|U37771.1|ATU37771 Arabidopsis thaliana glutamate dehydrogenase 1 (GDH1) mRNA, complete cds Length = 1539 Score = 46.1 bits (23), Expect = 0.090 Identities = 59/71 (83%) Strand = Plus / Minus Query: 344 gtcatgtacgtcttgagctcccggttcaccttctcctcgtcccacatgaacccctggatg 403 |||||||| ||||| ||||| |||||||||||| || |||||||| || || || ||| Sbjct: 1213 gtcatgtaagtctttagctcatcgttcaccttctcttcctcccacataaagccttgaatg 1154 Query: 404 ttctgcaccca 414 ||||| ||||| Sbjct: 1153 ttctgaaccca 1143
>gb|DQ160071.1| Taraxacum officinale TO56-1 (To56-1) mRNA, partial cds Length = 175 Score = 44.1 bits (22), Expect = 0.36 Identities = 43/50 (86%) Strand = Plus / Minus Query: 367 gttcaccttctcctcgtcccacatgaacccctggatgttctgcacccact 416 |||||| || |||||||||||||| ||||| || || ||||| ||||||| Sbjct: 166 gttcactttttcctcgtcccacataaacccttgaatattctgaacccact 117
>gb|DQ456874.1| Hordeum vulgare L-galactose dehydrogenase (GalDH) mRNA, complete cds Length = 1217 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 234 cgcggaggacggtggcgcgggcgacg 259 ||||| |||||||||||||||||||| Sbjct: 177 cgcggcggacggtggcgcgggcgacg 152
>gb|AY509088.1| Nelia nemyroides voucher CH8A2 elongation factor-1 alpha gene, partial cds Length = 1228 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 ttgacgccgagggtgaaggcg 283 ||||||||||||||||||||| Sbjct: 409 ttgacgccgagggtgaaggcg 389
>gb|AY509062.1| Enodia portlandia voucher DNA96-018 elongation factor-1 alpha gene, partial cds Length = 1247 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 ttgacgccgagggtgaaggcg 283 ||||||||||||||||||||| Sbjct: 409 ttgacgccgagggtgaaggcg 389
>gb|AY362985.1| Andrena nasonii elongation factor-1alpha (EF-1a) gene, partial cds Length = 427 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 ttgacgccgagggtgaaggcg 283 ||||||||||||||||||||| Sbjct: 259 ttgacgccgagggtgaaggcg 239
>gb|AY362984.1| Andrena n. sp. Ansp643 elongation factor-1alpha (EF-1a) gene, partial cds Length = 427 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 ttgacgccgagggtgaaggcg 283 ||||||||||||||||||||| Sbjct: 259 ttgacgccgagggtgaaggcg 239
>gb|AY651887.1| Myrmica sp. RAJ2132 elongation factor 1-alpha (EF-1a) gene, EF-1a-F2 allele, partial cds Length = 848 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 ttgacgccgagggtgaaggcg 283 ||||||||||||||||||||| Sbjct: 227 ttgacgccgagggtgaaggcg 207
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 215 ggcgatcaggcctcccagccgcgga 239 ||||||||||||| ||||||||||| Sbjct: 3189081 ggcgatcaggcctgccagccgcgga 3189057
>gb|DQ497632.1| Vitis vinifera GDHB glutamate dehydrogenase (gdhB) gene, complete cds Length = 4013 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 374 ttctcctcgtcccacatgaacccctggatgttctgca 410 |||||||| ||||||||||| || || |||||||||| Sbjct: 3859 ttctcctcatcccacatgaaaccttgaatgttctgca 3823
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 247 ggcgcgggcgacgcggttgacgccg 271 ||||||||||||||||||| ||||| Sbjct: 1623518 ggcgcgggcgacgcggttgccgccg 1623494
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 212 gccggcgatcaggcctcccagccgc 236 |||||||||||||||| |||||||| Sbjct: 208553 gccggcgatcaggcctgccagccgc 208577 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 199 ttgcaggatgccggccggcgatca 222 |||| ||||||||||||||||||| Sbjct: 497751 ttgccggatgccggccggcgatca 497774
>ref|XM_792443.1| PREDICTED: Strongylocentrotus purpuratus similar to CG5882-PA (LOC592945), partial mRNA Length = 2551 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 356 ttgagctcccggttcaccttctcct 380 ||||||||||||| ||||||||||| Sbjct: 852 ttgagctcccggtccaccttctcct 828
>gb|AF403178.3| Lycopersicon esculentum NADH-glutamate dehydrogenase (gdh) gene, complete cds Length = 3568 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 274 ggtgaaggcgcccatgcggaggtcgcagt 302 ||||||||||||||| |||||||| |||| Sbjct: 3306 ggtgaaggcgcccattcggaggtcacagt 3278
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 247 ggcgcgggcgacgcggttgacgccg 271 ||||||||||||||||||| ||||| Sbjct: 2958850 ggcgcgggcgacgcggttgccgccg 2958826
>emb|BX279525.12| Zebrafish DNA sequence from clone CH211-244C18 in linkage group 12, complete sequence Length = 173914 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 gtttattcaacttttttgttg 148 ||||||||||||||||||||| Sbjct: 116475 gtttattcaacttttttgttg 116495
>gb|AC022706.7| Homo sapiens chromosome , clone RP11-47L3, complete sequence Length = 162474 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 61 aagatggtgatgctactgttctgtc 85 |||||||||||||| |||||||||| Sbjct: 125279 aagatggtgatgctcctgttctgtc 125255
>gb|AC027373.11| Homo sapiens chromosome 8, clone RP11-521I2, complete sequence Length = 140783 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 acacgaagaagatggtgatgc 73 ||||||||||||||||||||| Sbjct: 110375 acacgaagaagatggtgatgc 110355
>gb|AC060766.8| Homo sapiens chromosome 17, clone RP11-686D22, complete sequence Length = 169675 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 61 aagatggtgatgctactgttctgtc 85 |||||||||||||| |||||||||| Sbjct: 140003 aagatggtgatgctcctgttctgtc 140027
>gb|AF234575.1|AF234575 Sphecodina abbottii elongation factor-1 alpha mRNA, partial cds Length = 1240 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 ttgacgccgagggtgaaggcg 283 ||||||||||||||||||||| Sbjct: 396 ttgacgccgagggtgaaggcg 376
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 238 gaggacggtggcgcgggcgacgcgg 262 |||||||||| |||||||||||||| Sbjct: 21441896 gaggacggtgacgcgggcgacgcgg 21441920
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 214 cggcgatcaggcctcccagccgcgg 238 |||||||||||| |||||||||||| Sbjct: 3151427 cggcgatcaggcgtcccagccgcgg 3151403
>gb|AY218258.2| Bicyclus anynana isolate 10-5 elongation factor-1alpha (EF-1alpha) gene, partial cds Length = 1215 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 ttgacgccgagggtgaaggcg 283 ||||||||||||||||||||| Sbjct: 396 ttgacgccgagggtgaaggcg 376
>gb|AY090178.2| Erebia palarica isolate 9-4 elongation factor-1 alpha (EF-1alpha) gene, partial cds Length = 1199 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 ttgacgccgagggtgaaggcg 283 ||||||||||||||||||||| Sbjct: 381 ttgacgccgagggtgaaggcg 361
>dbj|AP005742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0489D11 Length = 150757 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 238 gaggacggtggcgcgggcgacgcgg 262 |||||||||| |||||||||||||| Sbjct: 3506 gaggacggtgacgcgggcgacgcgg 3530
>dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1210_A07 Length = 131394 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 238 gaggacggtggcgcgggcgacgcgg 262 |||||||||| |||||||||||||| Sbjct: 59001 gaggacggtgacgcgggcgacgcgg 59025
>gb|DQ339014.1| Pseudomaniola phaselis elongation factor-1 alpha (EF1-alpha) gene, partial cds Length = 1240 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 ttgacgccgagggtgaaggcg 283 ||||||||||||||||||||| Sbjct: 396 ttgacgccgagggtgaaggcg 376
>gb|DQ338990.1| Hyponephele sp. CP10-13 elongation factor-1 alpha (EF1-alpha) gene, partial cds Length = 1226 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 ttgacgccgagggtgaaggcg 283 ||||||||||||||||||||| Sbjct: 382 ttgacgccgagggtgaaggcg 362
>gb|DQ338989.1| Hyponephele cadusia elongation factor-1 alpha (EF1-alpha) gene, partial cds Length = 1240 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 ttgacgccgagggtgaaggcg 283 ||||||||||||||||||||| Sbjct: 396 ttgacgccgagggtgaaggcg 376
>gb|DQ338914.1| Satyrodes eurydice elongation factor-1 alpha (EF1-alpha) gene, partial cds Length = 1227 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 ttgacgccgagggtgaaggcg 283 ||||||||||||||||||||| Sbjct: 396 ttgacgccgagggtgaaggcg 376
>gb|DQ338908.1| Kirinia roxelana elongation factor-1 alpha (EF1-alpha) gene, partial cds Length = 1240 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 ttgacgccgagggtgaaggcg 283 ||||||||||||||||||||| Sbjct: 396 ttgacgccgagggtgaaggcg 376
>emb|AL928692.9| Zebrafish DNA sequence from clone CH211-208D15 in linkage group 12, complete sequence Length = 215891 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 gtttattcaacttttttgttg 148 ||||||||||||||||||||| Sbjct: 153137 gtttattcaacttttttgttg 153117
>gb|U48695.1|SLU48695 Solanum lycopersicum glutamate dehydrogenase (legdh1) mRNA, complete cds Length = 1568 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 274 ggtgaaggcgcccatgcggaggtcgcagt 302 ||||||||||||||| |||||||| |||| Sbjct: 1254 ggtgaaggcgcccattcggaggtcacagt 1226
>gb|AC079093.16| Homo sapiens chromosome 8, clone RP11-265H5, complete sequence Length = 141612 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 acacgaagaagatggtgatgc 73 ||||||||||||||||||||| Sbjct: 97627 acacgaagaagatggtgatgc 97647
>gb|AC135500.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0034J04 map S1466, complete sequence Length = 140012 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ttattcaacttttttgttga 149 |||||||||||||||||||| Sbjct: 52048 ttattcaacttttttgttga 52029
>gb|AC122630.5| Rattus norvegicus 4 BAC CH230-131B2 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 211343 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 ggcgagagagcaagggcatt 200 |||||||||||||||||||| Sbjct: 173665 ggcgagagagcaagggcatt 173684
>gb|AE008974.1| Agrobacterium tumefaciens str. C58 AT plasmid section 49 of 49 of the complete sequence Length = 11004 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 gccggcgatcaggcctccca 231 |||||||||||||||||||| Sbjct: 9259 gccggcgatcaggcctccca 9240
>gb|AE007922.1| Agrobacterium tumefaciens str. C58 plasmid AT, section 50 of 50 of the complete sequence Length = 10777 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 gccggcgatcaggcctccca 231 |||||||||||||||||||| Sbjct: 9340 gccggcgatcaggcctccca 9321
>gb|AC135501.4| Oryza sativa chromosome 3 BAC OSJNBb0011J16 genomic sequence, complete sequence Length = 124170 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ttattcaacttttttgttga 149 |||||||||||||||||||| Sbjct: 119780 ttattcaacttttttgttga 119761
>ref|XM_546997.2| PREDICTED: Canis familiaris similar to Zinc finger protein 38 (Zinc finger protein KOX25) (Zinc finger protein HF.12) (Zinc finger protein 3) (HZF3.1 protein) (LOC489879), mRNA Length = 1523 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 atgaacccctggatgttctg 408 |||||||||||||||||||| Sbjct: 1267 atgaacccctggatgttctg 1286
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 ttgcaggatgccggccggcg 218 |||||||||||||||||||| Sbjct: 443414 ttgcaggatgccggccggcg 443433
>gb|AF234570.1|AF234570 Lemonia dumi elongation factor-1 alpha mRNA, partial cds Length = 1228 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 ttgacgccgagggtgaaggc 282 |||||||||||||||||||| Sbjct: 396 ttgacgccgagggtgaaggc 377
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 ttattcaacttttttgttga 149 |||||||||||||||||||| Sbjct: 19918118 ttattcaacttttttgttga 19918137
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ttattcaacttttttgttga 149 |||||||||||||||||||| Sbjct: 16363691 ttattcaacttttttgttga 16363672
>gb|AC097523.4| Homo sapiens BAC clone RP11-597P14 from 2, complete sequence Length = 108711 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 375 tctcctcgtcccacatgaacccctggat 402 ||||||| |||||||||||||| ||||| Sbjct: 92657 tctcctcttcccacatgaacccttggat 92684
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 cggtggcgcgggcgacgcgg 262 |||||||||||||||||||| Sbjct: 701690 cggtggcgcgggcgacgcgg 701709
>dbj|AP005448.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0404G11 Length = 167623 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ttattcaacttttttgttga 149 |||||||||||||||||||| Sbjct: 4482 ttattcaacttttttgttga 4463
>dbj|AP004667.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0433E10 Length = 144643 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 ttattcaacttttttgttga 149 |||||||||||||||||||| Sbjct: 86296 ttattcaacttttttgttga 86315
>dbj|AP005188.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0473C09 Length = 141066 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ttattcaacttttttgttga 149 |||||||||||||||||||| Sbjct: 69747 ttattcaacttttttgttga 69728
>gb|DQ338910.1| Lopinga achine elongation factor-1 alpha (EF1-alpha) gene, partial cds Length = 1212 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 ttgacgccgagggtgaaggc 282 |||||||||||||||||||| Sbjct: 381 ttgacgccgagggtgaaggc 362
>gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome Length = 1799146 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 acattgctgtgtttcgcttt 40 |||||||||||||||||||| Sbjct: 246015 acattgctgtgtttcgcttt 245996
>emb|CT485796.1| Medicago truncatula chromosome 5 clone mth2-154i23, COMPLETE SEQUENCE Length = 129047 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 gtttattcaacttttttgtt 147 |||||||||||||||||||| Sbjct: 50660 gtttattcaacttttttgtt 50641 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,703,472 Number of Sequences: 3902068 Number of extensions: 2703472 Number of successful extensions: 58310 Number of sequences better than 10.0: 103 Number of HSP's better than 10.0 without gapping: 105 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57535 Number of HSP's gapped (non-prelim): 773 length of query: 416 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 394 effective length of database: 17,147,199,772 effective search space: 6755996710168 effective search space used: 6755996710168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)