>MEND_HAEIN (P44612) Menaquinone biosynthesis protein menD [Includes:|
           2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
           synthase (EC 2.5.1.64) (SHCHC synthase); 2-oxoglutarate
           decarboxylase (EC 4.1.1.71) (Alpha-ketoglutarate
           decarboxylase) (KDC)]
          Length = 568

 Score = 30.8 bits (68), Expect = 0.97
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = +2

Query: 104 EFVSLSWFFSTFIEQELGRSNDGVAEAGFPLRLPRLHP 217
           E ++LS F +TFIEQ++G     + EA   LRLP L P
Sbjct: 355 EPLALSKFCATFIEQQVG---GNLTEASLALRLPTLLP 389


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,804,538
Number of Sequences: 219361
Number of extensions: 447418
Number of successful extensions: 1105
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)