ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart25f12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479772.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1767 Score = 137 bits (69), Expect = 3e-29 Identities = 172/205 (83%), Gaps = 6/205 (2%) Strand = Plus / Minus Query: 82 aacggagccagcggcggagatcagtggtggacgacggggagactggttccccgccgatgc 141 |||| |||||||||||||| || |||||||| ||||| ||||| |||||||||| || Sbjct: 1673 aacgaagccagcggcggaggtcggtggtggatgacggagagaccacgtccccgccgaggc 1614 Query: 142 tctctgcgcacgacagagacgacacggtggagcgctgctcggaggtgaaccgccccgttg 201 |||| ||||| ||| ||||||||| | || |||||||| || | ||||| ||||| | Sbjct: 1613 tctccgcgcaggac---gacgacacgttcgaccgctgctccgacgagaacctccccgccg 1557 Query: 202 cgctcttgaagctcgggctccgcaggctttgcgcgtacccaacgccgtacgggtcctgcg 261 |||||||||||||||||||||||||||| ||||||||| ||||||||||||| | Sbjct: 1556 cgctcttgaagctcgggctccgcaggctctgcgcgtac---gcgccgtacgggtcgatgg 1500 Query: 262 ggacggggaacgacagccgcttctt 286 ||||||||||||||||||||||||| Sbjct: 1499 ggacggggaacgacagccgcttctt 1475 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 329 gtcgcgctccggggttgcagggcgttgccgtggcgcgctctgggagcggatacgtgcctt 388 |||||||||||| || || ||||| ||||| |||||||||||||| || | || ||||| Sbjct: 1435 gtcgcgctccggcgtcgccgggcgctgccgcggcgcgctctgggaacgcacccgcgcctt 1376 Query: 389 tgcagattccgtggccgccatgtagttcggca 420 || || ||||| ||||||||||||||||||| Sbjct: 1375 ggcggactccgtcgccgccatgtagttcggca 1344 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 46 ggcattacaacgaacacctcgccg 69 ||||||||| |||||||||||||| Sbjct: 1713 ggcattacatcgaacacctcgccg 1690
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 137 bits (69), Expect = 3e-29 Identities = 172/205 (83%), Gaps = 6/205 (2%) Strand = Plus / Plus Query: 82 aacggagccagcggcggagatcagtggtggacgacggggagactggttccccgccgatgc 141 |||| |||||||||||||| || |||||||| ||||| ||||| |||||||||| || Sbjct: 789219 aacgaagccagcggcggaggtcggtggtggatgacggagagaccacgtccccgccgaggc 789278 Query: 142 tctctgcgcacgacagagacgacacggtggagcgctgctcggaggtgaaccgccccgttg 201 |||| ||||| ||| ||||||||| | || |||||||| || | ||||| ||||| | Sbjct: 789279 tctccgcgcaggac---gacgacacgttcgaccgctgctccgacgagaacctccccgccg 789335 Query: 202 cgctcttgaagctcgggctccgcaggctttgcgcgtacccaacgccgtacgggtcctgcg 261 |||||||||||||||||||||||||||| ||||||||| ||||||||||||| | Sbjct: 789336 cgctcttgaagctcgggctccgcaggctctgcgcgtac---gcgccgtacgggtcgatgg 789392 Query: 262 ggacggggaacgacagccgcttctt 286 ||||||||||||||||||||||||| Sbjct: 789393 ggacggggaacgacagccgcttctt 789417 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 329 gtcgcgctccggggttgcagggcgttgccgtggcgcgctctgggagcggatacgtgcctt 388 |||||||||||| || || ||||| ||||| |||||||||||||| || | || ||||| Sbjct: 789457 gtcgcgctccggcgtcgccgggcgctgccgcggcgcgctctgggaacgcacccgcgcctt 789516 Query: 389 tgcagattccgtggccgccatgtagttcggca 420 || || ||||| ||||||||||||||||||| Sbjct: 789517 ggcggactccgtcgccgccatgtagttcggca 789548 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 ggcattacaacgaacacctcgccg 69 ||||||||| |||||||||||||| Sbjct: 789179 ggcattacatcgaacacctcgccg 789202
>dbj|AP005657.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0427G12 Length = 185545 Score = 137 bits (69), Expect = 3e-29 Identities = 172/205 (83%), Gaps = 6/205 (2%) Strand = Plus / Plus Query: 82 aacggagccagcggcggagatcagtggtggacgacggggagactggttccccgccgatgc 141 |||| |||||||||||||| || |||||||| ||||| ||||| |||||||||| || Sbjct: 88439 aacgaagccagcggcggaggtcggtggtggatgacggagagaccacgtccccgccgaggc 88498 Query: 142 tctctgcgcacgacagagacgacacggtggagcgctgctcggaggtgaaccgccccgttg 201 |||| ||||| ||| ||||||||| | || |||||||| || | ||||| ||||| | Sbjct: 88499 tctccgcgcaggac---gacgacacgttcgaccgctgctccgacgagaacctccccgccg 88555 Query: 202 cgctcttgaagctcgggctccgcaggctttgcgcgtacccaacgccgtacgggtcctgcg 261 |||||||||||||||||||||||||||| ||||||||| ||||||||||||| | Sbjct: 88556 cgctcttgaagctcgggctccgcaggctctgcgcgtac---gcgccgtacgggtcgatgg 88612 Query: 262 ggacggggaacgacagccgcttctt 286 ||||||||||||||||||||||||| Sbjct: 88613 ggacggggaacgacagccgcttctt 88637 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 329 gtcgcgctccggggttgcagggcgttgccgtggcgcgctctgggagcggatacgtgcctt 388 |||||||||||| || || ||||| ||||| |||||||||||||| || | || ||||| Sbjct: 88677 gtcgcgctccggcgtcgccgggcgctgccgcggcgcgctctgggaacgcacccgcgcctt 88736 Query: 389 tgcagattccgtggccgccatgtagttcggca 420 || || ||||| ||||||||||||||||||| Sbjct: 88737 ggcggactccgtcgccgccatgtagttcggca 88768 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 ggcattacaacgaacacctcgccg 69 ||||||||| |||||||||||||| Sbjct: 88399 ggcattacatcgaacacctcgccg 88422
>dbj|AK100461.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091O18, full insert sequence Length = 1767 Score = 137 bits (69), Expect = 3e-29 Identities = 172/205 (83%), Gaps = 6/205 (2%) Strand = Plus / Minus Query: 82 aacggagccagcggcggagatcagtggtggacgacggggagactggttccccgccgatgc 141 |||| |||||||||||||| || |||||||| ||||| ||||| |||||||||| || Sbjct: 1673 aacgaagccagcggcggaggtcggtggtggatgacggagagaccacgtccccgccgaggc 1614 Query: 142 tctctgcgcacgacagagacgacacggtggagcgctgctcggaggtgaaccgccccgttg 201 |||| ||||| ||| ||||||||| | || |||||||| || | ||||| ||||| | Sbjct: 1613 tctccgcgcaggac---gacgacacgttcgaccgctgctccgacgagaacctccccgccg 1557 Query: 202 cgctcttgaagctcgggctccgcaggctttgcgcgtacccaacgccgtacgggtcctgcg 261 |||||||||||||||||||||||||||| ||||||||| ||||||||||||| | Sbjct: 1556 cgctcttgaagctcgggctccgcaggctctgcgcgtac---gcgccgtacgggtcgatgg 1500 Query: 262 ggacggggaacgacagccgcttctt 286 ||||||||||||||||||||||||| Sbjct: 1499 ggacggggaacgacagccgcttctt 1475 Score = 63.9 bits (32), Expect = 4e-07 Identities = 77/92 (83%) Strand = Plus / Minus Query: 329 gtcgcgctccggggttgcagggcgttgccgtggcgcgctctgggagcggatacgtgcctt 388 |||||||||||| || || ||||| ||||| |||||||||||||| || | || ||||| Sbjct: 1435 gtcgcgctccggcgtcgccgggcgctgccgcggcgcgctctgggaacgcacccgcgcctt 1376 Query: 389 tgcagattccgtggccgccatgtagttcggca 420 || || ||||| ||||||||||||| ||||| Sbjct: 1375 ggcggactccgtcgccgccatgtagtccggca 1344 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 46 ggcattacaacgaacacctcgccg 69 ||||||||| |||||||||||||| Sbjct: 1713 ggcattacatcgaacacctcgccg 1690
>gb|AY022703.1| Oryza sativa microsatellite MRG5028 containing (CCG)X8, genomic sequence Length = 224 Score = 97.6 bits (49), Expect = 3e-17 Identities = 87/99 (87%), Gaps = 3/99 (3%) Strand = Plus / Plus Query: 188 gaaccgccccgttgcgctcttgaagctcgggctccgcaggctttgcgcgtacccaacgcc 247 ||||| ||||| ||||||||||||||||||||||||||||| ||||||||| |||| Sbjct: 1 gaacctccccgccgcgctcttgaagctcgggctccgcaggctctgcgcgtac---gcgcc 57 Query: 248 gtacgggtcctgcgggacggggaacgacagccgcttctt 286 ||||||||| |||||||||||||||||||||||||| Sbjct: 58 gtacgggtcgatggggacggggaacgacagccgcttctt 96 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 329 gtcgcgctccggggttgcagggcgttgccgtggcgcgctctgggagcggatacgtgcctt 388 |||||||||||| || || ||||| ||||| |||||||||||||| || | || ||||| Sbjct: 136 gtcgcgctccggcgtcgccgggcgctgccgcggcgcgctctgggaacgcacccgcgcctt 195 Query: 389 tgcagattccgtggccgccatgtagttcg 417 || || ||||| |||||||||||||||| Sbjct: 196 ggcggactccgtcgccgccatgtagttcg 224
>gb|AF528565.1| Zea mays cultivar BSSS53 chromosome 4 clone BAC 072, complete sequence Length = 106246 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 201 gcgctcttgaagctcgggctccgcaggctttgcgcgta 238 |||| |||||||||| |||| ||||||||||||||||| Sbjct: 91791 gcgcgcttgaagctcaggctgcgcaggctttgcgcgta 91828
>gb|BT018295.1| Zea mays clone EL01T0205H06.c mRNA sequence Length = 1248 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 263 gacggggaacgacagccgcttcttg 287 ||||||||||||||| ||||||||| Sbjct: 940 gacggggaacgacaggcgcttcttg 916
>gb|AY078774.1| Neriene radiata specimen-voucher G6 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 391 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 151 acgacagagacgacacggtgg 171 ||||||||||||||||||||| Sbjct: 109 acgacagagacgacacggtgg 89
>gb|AY103748.1| Zea mays PCO155237 mRNA sequence Length = 862 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 263 gacggggaacgacagccgcttcttg 287 ||||||||||||||| ||||||||| Sbjct: 587 gacggggaacgacaggcgcttcttg 563
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 agaaaattagcagagcaattaaac 42 |||||||||||| ||||||||||| Sbjct: 35999283 agaaaattagcaaagcaattaaac 35999306
>gb|AC025724.3| Caenorhabditis elegans cosmid Y67D8C, complete sequence Length = 103670 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 attacgagaaaattagcaga 32 |||||||||||||||||||| Sbjct: 4235 attacgagaaaattagcaga 4216
>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete sequence Length = 164179 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 agaaaattagcagagcaattaaac 42 |||||||||||| ||||||||||| Sbjct: 60794 agaaaattagcaaagcaattaaac 60817
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 agaaaattagcagagcaattaaac 42 |||||||||||| ||||||||||| Sbjct: 36089357 agaaaattagcaaagcaattaaac 36089380
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 gcagggcgttgccgtggcgc 364 |||||||||||||||||||| Sbjct: 1762087 gcagggcgttgccgtggcgc 1762106
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 ccgtggccgccatgtagttc 416 |||||||||||||||||||| Sbjct: 357842 ccgtggccgccatgtagttc 357823 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,852,304 Number of Sequences: 3902068 Number of extensions: 1852304 Number of successful extensions: 31303 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31176 Number of HSP's gapped (non-prelim): 118 length of query: 420 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 398 effective length of database: 17,147,199,772 effective search space: 6824585509256 effective search space used: 6824585509256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
