ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart25f10 |
|---|---|
| Clone Library Name | barley_pub |
>RHG12_MOUSE (Q8C0D4) Rho-GTPase-activating protein 12| Length = 838 Score = 32.0 bits (71), Expect = 0.44 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 10/73 (13%) Frame = +2 Query: 41 SSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPY--------KNLFSEEGV--HSSLLW 190 +++K +P P +S+ HQD ++ L+ + KN S V SSLL+ Sbjct: 433 TTTKLCLPENESPPTSSKHQDPGQEKYGLLNVTKITENGKKVRKNWLSSWAVLQGSSLLF 492 Query: 191 GKPHSPGSSWFGS 229 K +SWFGS Sbjct: 493 TKTQGSSTSWFGS 505
>CLFA_STAAR (Q6GIK4) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 1029 Score = 30.4 bits (67), Expect = 1.3 Identities = 22/65 (33%), Positives = 33/65 (50%) Frame = +2 Query: 20 SENNS*FSSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGVHSSLLWGKP 199 S ++S S+ ++PP P S TN SNK + P + SE+ ++SL+WG Sbjct: 955 SNSDSDSGSNNNVVPPN-SPKSGTN---ASNKNEAKESKEPLPDTGSEDEANTSLIWGLL 1010 Query: 200 HSPGS 214 S GS Sbjct: 1011 ASLGS 1015
>CLFA_STAAW (Q8NXJ1) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 946 Score = 28.9 bits (63), Expect = 3.7 Identities = 20/65 (30%), Positives = 32/65 (49%) Frame = +2 Query: 20 SENNS*FSSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGVHSSLLWGKP 199 S ++S S+ ++PP S N + SNK + P + SE+ ++SL+WG Sbjct: 872 SNSDSESGSNNNVVPPN----SPKNGTNASNKNEAKDSKEPLPDTGSEDEANTSLIWGLL 927 Query: 200 HSPGS 214 S GS Sbjct: 928 ASIGS 932
>CLFA_STAAS (Q6GB45) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 928 Score = 28.9 bits (63), Expect = 3.7 Identities = 20/65 (30%), Positives = 32/65 (49%) Frame = +2 Query: 20 SENNS*FSSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGVHSSLLWGKP 199 S ++S S+ ++PP S N + SNK + P + SE+ ++SL+WG Sbjct: 854 SNSDSESGSNNNVVPPN----SPKNGTNASNKNEAKDSKEPLPDTGSEDEANTSLIWGLL 909 Query: 200 HSPGS 214 S GS Sbjct: 910 ASIGS 914
>CLFA_STAAM (Q932C5) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 935 Score = 28.9 bits (63), Expect = 3.7 Identities = 20/65 (30%), Positives = 32/65 (49%) Frame = +2 Query: 20 SENNS*FSSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGVHSSLLWGKP 199 S ++S S+ ++PP S N + SNK + P + SE+ ++SL+WG Sbjct: 861 SNSDSESGSNNNVVPPN----SPKNGTNASNKNEAKDSKEPLPDTGSEDEANTSLIWGLL 916 Query: 200 HSPGS 214 S GS Sbjct: 917 ASLGS 921
>CLFA_STAAN (Q99VJ4) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 989 Score = 28.9 bits (63), Expect = 3.7 Identities = 20/65 (30%), Positives = 32/65 (49%) Frame = +2 Query: 20 SENNS*FSSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGVHSSLLWGKP 199 S ++S S+ ++PP S N + SNK + P + SE+ ++SL+WG Sbjct: 915 SNSDSESGSNNNVVPPN----SPKNGTNASNKNEAKDSKEPLPDTGSEDEANTSLIWGLL 970 Query: 200 HSPGS 214 S GS Sbjct: 971 ASLGS 975
>CNTP1_MOUSE (O54991) Contactin-associated protein 1 precursor (Caspr) (Caspr1)| (Neurexin 4) (Neurexin IV) (Paranodin) (NCP1) (MHDNIV) Length = 1385 Score = 28.9 bits (63), Expect = 3.7 Identities = 12/56 (21%), Positives = 27/56 (48%) Frame = -1 Query: 230 MSQTMKIQGSVVSPREGKSVHPLPRINFCMELWQLKKPFYWMYPDGWLSLAAPILV 63 +++ M++QG + G + + ++ W L F + + DGW+++ LV Sbjct: 1236 LAEAMRVQGELSESNCGAMPRLVSEVQPELDPWYLPPDFPYYHDDGWIAILLGFLV 1291
>CLFA_STAAU (Q53653) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 933 Score = 28.9 bits (63), Expect = 3.7 Identities = 20/65 (30%), Positives = 32/65 (49%) Frame = +2 Query: 20 SENNS*FSSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGVHSSLLWGKP 199 S ++S S+ ++PP S N + SNK + P + SE+ ++SL+WG Sbjct: 859 SNSDSESGSNNNVVPPN----SPKNGTNASNKNEAKDSKEPLPDTGSEDEANTSLIWGLL 914 Query: 200 HSPGS 214 S GS Sbjct: 915 ASIGS 919
>CLFA_STAAC (Q5HHM8) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 933 Score = 28.9 bits (63), Expect = 3.7 Identities = 20/65 (30%), Positives = 32/65 (49%) Frame = +2 Query: 20 SENNS*FSSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGVHSSLLWGKP 199 S ++S S+ ++PP S N + SNK + P + SE+ ++SL+WG Sbjct: 859 SNSDSESGSNNNVVPPN----SPKNGTNASNKNEAKDSKEPLPDTGSEDEANTSLIWGLL 914 Query: 200 HSPGS 214 S GS Sbjct: 915 ASIGS 919
>UNG_SCHPO (O74834) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 322 Score = 28.5 bits (62), Expect = 4.8 Identities = 16/54 (29%), Positives = 26/54 (48%) Frame = +2 Query: 47 SKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGVHSSLLWGKPHSP 208 S+ + PPK + S ++H +V L+ PY N+ G+ S+ G P P Sbjct: 112 SQRVFPPKEDIYSWSHHTPLHKTKVILLGQDPYHNIGQAHGLCFSVRPGIPCPP 165
>PRIO_TRIVU (P51780) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 259 Score = 28.1 bits (61), Expect = 6.3 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 3/21 (14%) Frame = +2 Query: 188 WGKPHSPGSSW---FGSFTWG 241 WG+PH GSSW G WG Sbjct: 78 WGQPHPGGSSWGQPHGGSNWG 98
>CNTP1_RAT (P97846) Contactin-associated protein 1 precursor (Caspr) (Caspr1)| (Neurexin 4) (Neurexin IV) (p190) (Paranodin) Length = 1381 Score = 28.1 bits (61), Expect = 6.3 Identities = 12/56 (21%), Positives = 27/56 (48%) Frame = -1 Query: 230 MSQTMKIQGSVVSPREGKSVHPLPRINFCMELWQLKKPFYWMYPDGWLSLAAPILV 63 +++ M++QG + G + + ++ W L F + + DGW+++ LV Sbjct: 1236 LAEAMRVQGELSESNCGAMPRLVSEVPPELDPWYLPPDFPYYHDDGWIAILLGFLV 1291 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,544,255 Number of Sequences: 219361 Number of extensions: 769577 Number of successful extensions: 2065 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2030 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2065 length of database: 80,573,946 effective HSP length: 57 effective length of database: 68,070,369 effective search space used: 1633688856 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
