Clone Name | rbart25f10 |
---|---|
Clone Library Name | barley_pub |
>gb|M36650.1|BLYGAPDH Barley glyceraldehyde-3-phosphate dehydrogenase mRNA, 3' end Length = 1141 Score = 331 bits (167), Expect = 6e-88 Identities = 222/240 (92%), Gaps = 2/240 (0%) Strand = Plus / Minus Query: 6 aacccctgacgatgagtgaaaataactcatgatttagttcaagcaagtacataataccac 65 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1141 aacccatgacgatgagtgaaaataactcatgatttagttcaagcaagtacataataccac 1082 Query: 66 caaaatgggagccgctaagctcaaccaaccatcaggatacatccaataaaagggnnnnnn 125 ||||||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1081 caaaatgtgagccgctaagctcaaccaaccatcaggat-catccaataaaaggttttttt 1023 Query: 126 nagttgccataattccatacaaaaatttattctcggaagagggtgtacactcttcccttc 185 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct: 1022 tagttgccataattccatacaaaaatttattctcggaagaggttgtacactcttctcttc 963 Query: 186 tctgggggaaaccacactcccctggatcttcatggtttggctcatttacttggggctgtg 245 ||||||| |||||||||| ||||| ||||||||| |||||||||||||||||| |||||| Sbjct: 962 tctggggcaaaccacact-ccctgtatcttcatgctttggctcatttacttggtgctgtg 904
>ref|XM_506852.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1791_B03.34 mRNA Length = 1460 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 147 aaaatttattctcggaagagg 167 ||||||||||||||||||||| Sbjct: 1323 aaaatttattctcggaagagg 1303
>ref|XM_466582.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1456 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 147 aaaatttattctcggaagagg 167 ||||||||||||||||||||| Sbjct: 1339 aaaatttattctcggaagagg 1319
>ref|XM_614616.2| PREDICTED: Bos taurus similar to solute carrier family 25 member 24 isoform 2, transcript variant 2 (LOC534742), mRNA Length = 3261 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 atttagttcaagcaagtacat 57 ||||||||||||||||||||| Sbjct: 1695 atttagttcaagcaagtacat 1675
>ref|XM_864288.1| PREDICTED: Bos taurus similar to solute carrier family 25 member 24 isoform 2, transcript variant 3 (LOC534742), mRNA Length = 3324 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 atttagttcaagcaagtacat 57 ||||||||||||||||||||| Sbjct: 1758 atttagttcaagcaagtacat 1738
>gb|DQ083193.1| Oryza sativa (indica cultivar-group) clone 8S4Eb01 mRNA sequence Length = 206 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 147 aaaatttattctcggaagagg 167 ||||||||||||||||||||| Sbjct: 38 aaaatttattctcggaagagg 18
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 147 aaaatttattctcggaagagg 167 ||||||||||||||||||||| Sbjct: 23549735 aaaatttattctcggaagagg 23549715 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 ctggatcttcatggtttggctcat 230 ||||||||||||||||||| |||| Sbjct: 16474517 ctggatcttcatggtttggatcat 16474494 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 ctggatcttcatggtttggctcat 230 ||||||||||||||||||| |||| Sbjct: 10568791 ctggatcttcatggtttggatcat 10568768
>dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1791_B03 Length = 166214 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 147 aaaatttattctcggaagagg 167 ||||||||||||||||||||| Sbjct: 115418 aaaatttattctcggaagagg 115398
>dbj|AK099086.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009G10, full insert sequence Length = 1460 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 147 aaaatttattctcggaagagg 167 ||||||||||||||||||||| Sbjct: 1323 aaaatttattctcggaagagg 1303
>dbj|AK062215.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A09, full insert sequence Length = 1455 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 147 aaaatttattctcggaagagg 167 ||||||||||||||||||||| Sbjct: 1338 aaaatttattctcggaagagg 1318
>gb|AC158155.4| Mus musculus chromosome 3, clone RP23-167L9, complete sequence Length = 205345 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 actcttcccttctctggggg 193 |||||||||||||||||||| Sbjct: 194495 actcttcccttctctggggg 194476
>gb|AC008284.7| Drosophila melanogaster clone BACR03M22, complete sequence Length = 161996 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 ataattccatacaaaaattt 153 |||||||||||||||||||| Sbjct: 114326 ataattccatacaaaaattt 114307
>gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome 12 clone OSJNBb0003F09, complete sequence Length = 159600 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 ctggatcttcatggtttggctcat 230 ||||||||||||||||||| |||| Sbjct: 26643 ctggatcttcatggtttgggtcat 26666
>gb|AC136843.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094M06, complete sequence Length = 135583 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 ctggatcttcatggtttggctcat 230 ||||||||||||||||||| |||| Sbjct: 62593 ctggatcttcatggtttggatcat 62570
>gb|AC099020.2| Drosophila melanogaster clone BACR30H01, complete sequence Length = 155557 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 gatgagtgaaaataactcat 35 |||||||||||||||||||| Sbjct: 143705 gatgagtgaaaataactcat 143686
>emb|CR450741.5| Zebrafish DNA sequence from clone CH211-269F16 in linkage group 24, complete sequence Length = 157603 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 tttggctcatttacttgggg 240 |||||||||||||||||||| Sbjct: 134298 tttggctcatttacttgggg 134279
>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03, complete sequence Length = 179798 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 cataattccatacaaaaatt 152 |||||||||||||||||||| Sbjct: 151831 cataattccatacaaaaatt 151850
>gb|AC106753.3| Homo sapiens chromosome 5 clone RP11-174H5, complete sequence Length = 95620 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 catggtttggctcatttact 235 |||||||||||||||||||| Sbjct: 21298 catggtttggctcatttact 21279
>gb|AC099017.1| Drosophila melanogaster, chromosome 2L, region 37D-37E, BAC clone BACR27M12, complete sequence Length = 157766 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 gatgagtgaaaataactcat 35 |||||||||||||||||||| Sbjct: 127254 gatgagtgaaaataactcat 127273
>gb|AC006084.1|AC006084 Homo sapiens chromosome 5, Pac clone 9c13 (LBNL H127), complete sequence Length = 121739 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 catggtttggctcatttact 235 |||||||||||||||||||| Sbjct: 74758 catggtttggctcatttact 74739
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 cataattccatacaaaaatt 152 |||||||||||||||||||| Sbjct: 30884310 cataattccatacaaaaatt 30884329
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 ctggatcttcatggtttggctcat 230 ||||||||||||||||||| |||| Sbjct: 26901676 ctggatcttcatggtttgggtcat 26901699
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 ctggatcttcatggtttggctcat 230 ||||||||||||||||||| |||| Sbjct: 15889995 ctggatcttcatggtttggatcat 15889972
>gb|AC156831.2| Mus musculus BAC clone RP24-276N6 from chromosome 9, complete sequence Length = 152361 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 cccttctctgggggaaacca 199 |||||||||||||||||||| Sbjct: 69230 cccttctctgggggaaacca 69211
>gb|AC096670.1| Homo sapiens BAC clone RP11-438K19 from 2, complete sequence Length = 181497 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 ctcttcccttctctggggga 194 |||||||||||||||||||| Sbjct: 96278 ctcttcccttctctggggga 96259
>emb|BX537129.6| Zebrafish DNA sequence from clone CH211-236I20 in linkage group 18, complete sequence Length = 166655 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 tttggctcatttacttgggg 240 |||||||||||||||||||| Sbjct: 11156 tttggctcatttacttgggg 11175
>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome Length = 4202352 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 tcatgatttagttcaagcaagtac 55 |||||||||||| ||||||||||| Sbjct: 2817665 tcatgatttagtacaagcaagtac 2817688
>dbj|AP005694.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0063E14 Length = 174415 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 ctggatcttcatggtttggctcat 230 ||||||||||||||||||| |||| Sbjct: 149959 ctggatcttcatggtttggatcat 149936
>dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0527E02 Length = 176826 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 ctggatcttcatggtttggctcat 230 ||||||||||||||||||| |||| Sbjct: 47932 ctggatcttcatggtttggatcat 47909
>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete sequence Length = 134586 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 cataattccatacaaaaatt 152 |||||||||||||||||||| Sbjct: 60884 cataattccatacaaaaatt 60903
>gb|AE003751.3| Drosophila melanogaster chromosome 3R, section 89 of 118 of the complete sequence Length = 307443 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 ataattccatacaaaaattt 153 |||||||||||||||||||| Sbjct: 248319 ataattccatacaaaaattt 248338
>gb|AE003663.4| Drosophila melanogaster chromosome 2L, section 72 of 83 of the complete sequence Length = 290667 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 gatgagtgaaaataactcat 35 |||||||||||||||||||| Sbjct: 98873 gatgagtgaaaataactcat 98892
>gb|AC005128.1|AC005128 Drosophila melanogaster, chromosome 2L, region 37F1-37F6, P1 clone DS08491, complete sequence Length = 60040 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 gatgagtgaaaataactcat 35 |||||||||||||||||||| Sbjct: 49018 gatgagtgaaaataactcat 48999
>emb|BX284664.8| Zebrafish DNA sequence from clone DKEY-7I23 in linkage group 8, complete sequence Length = 228202 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 aattccatacaaaaatttat 155 |||||||||||||||||||| Sbjct: 28677 aattccatacaaaaatttat 28658
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 ctggatcttcatggtttggctcat 230 ||||||||||||||||||| |||| Sbjct: 15977371 ctggatcttcatggtttggatcat 15977348
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 ctggatcttcatggtttggctcat 230 ||||||||||||||||||| |||| Sbjct: 26829846 ctggatcttcatggtttgggtcat 26829869
>emb|AL591973.1| Listeria monocytogenes strain EGD, complete genome, segment 1/12 Length = 200050 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 caagcaagtacataatacca 64 |||||||||||||||||||| Sbjct: 17524 caagcaagtacataatacca 17505
>emb|AL831803.4|CNS08CAG Oryza sativa chromosome 12, . BAC OSJNBb0016P08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 142370 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 ctggatcttcatggtttggctcat 230 ||||||||||||||||||| |||| Sbjct: 105643 ctggatcttcatggtttgggtcat 105666
>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome Length = 2905187 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 caagcaagtacataatacca 64 |||||||||||||||||||| Sbjct: 19606 caagcaagtacataatacca 19587 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,799,627 Number of Sequences: 3902068 Number of extensions: 2799627 Number of successful extensions: 44786 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44662 Number of HSP's gapped (non-prelim): 122 length of query: 245 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 223 effective length of database: 17,147,199,772 effective search space: 3823825549156 effective search space used: 3823825549156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)